Wall clock time and date at job start Tue Mar 31 2020 18:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.38554 * 2 1 4 4 C 1.54384 * 110.34396 * 237.77221 * 2 1 3 5 5 N 1.48141 * 104.61841 * 217.26001 * 4 2 1 6 6 C 1.34777 * 127.83838 * 219.60426 * 5 4 2 7 7 O 1.21287 * 119.99945 * 179.97438 * 6 5 4 8 8 C 1.50701 * 119.99850 * 359.97438 * 6 5 4 9 9 C 1.53893 * 113.58726 * 277.66072 * 8 6 5 10 10 C 1.53250 * 86.88162 * 220.43159 * 9 8 6 11 11 C 1.52464 * 128.58529 * 165.11813 * 10 9 8 12 12 C 1.52469 * 128.58519 * 245.05628 * 10 9 8 13 13 C 1.53253 * 87.69611 * 25.08478 * 10 9 8 14 14 C 1.48150 * 104.32380 * 39.58435 * 5 4 2 15 15 C 1.54286 * 110.34382 * 122.23264 * 2 1 3 16 16 H 1.08996 * 110.34476 * 0.02562 * 15 2 1 17 17 N 1.46897 * 110.34092 * 237.74189 * 15 2 1 18 18 C 1.46904 * 110.99835 * 154.99990 * 17 15 2 19 19 C 1.50703 * 109.47059 * 179.97438 * 18 17 15 20 20 O 1.21292 * 119.99935 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00013 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00209 * 179.97438 * 21 19 18 23 23 H 1.08007 * 119.99843 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00209 * 179.97438 * 22 21 19 25 25 N 1.31419 * 120.00032 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00260 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47311 * 89.99920 * 26 24 22 28 28 H 1.48497 * 109.47395 * 210.00163 * 26 24 22 29 29 H 1.48503 * 109.47145 * 330.00046 * 26 24 22 30 30 H 1.09004 * 109.46776 * 297.76375 * 1 2 3 31 31 H 1.08991 * 109.47640 * 57.76471 * 1 2 3 32 32 H 1.09000 * 109.47101 * 177.76845 * 1 2 3 33 33 H 1.09006 * 110.40310 * 336.04666 * 4 2 1 34 34 H 1.09007 * 110.40957 * 98.47353 * 4 2 1 35 35 H 1.08992 * 112.83331 * 48.88109 * 8 6 5 36 36 H 1.08998 * 113.64383 * 334.92811 * 9 8 6 37 37 H 1.09000 * 113.64558 * 105.93450 * 9 8 6 38 38 H 1.08997 * 117.51280 * 225.04889 * 11 10 9 39 39 H 1.09006 * 117.51192 * 10.14399 * 11 10 9 40 40 H 1.09004 * 117.50809 * 349.85175 * 12 10 9 41 41 H 1.08995 * 117.51543 * 134.90665 * 12 10 9 42 42 H 1.09005 * 113.64475 * 220.41660 * 13 10 9 43 43 H 1.08999 * 113.72651 * 89.43139 * 13 10 9 44 44 H 1.09001 * 110.40703 * 201.63107 * 14 5 4 45 45 H 1.08996 * 110.40508 * 79.19821 * 14 5 4 46 46 H 1.00897 * 111.00373 * 278.95299 * 17 15 2 47 47 H 1.08999 * 109.47383 * 299.99939 * 18 17 15 48 48 H 1.09000 * 109.46776 * 60.00072 * 18 17 15 49 49 H 0.96997 * 119.99847 * 0.02562 * 21 19 18 50 50 H 0.96998 * 120.00101 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0218 0.0000 4 6 2.0667 -0.7720 -1.2245 5 7 3.2664 -1.4815 -0.7227 6 6 4.4426 -1.6659 -1.3545 7 8 5.3371 -2.2739 -0.8056 8 6 4.6463 -1.1165 -2.7430 9 6 4.0755 -2.0181 -3.8518 10 6 5.3358 -1.6835 -4.6570 11 6 5.8842 -2.3793 -5.8978 12 6 5.4502 -0.9126 -5.9674 13 6 6.0406 -1.4116 -3.3235 14 6 2.8802 -1.9421 0.6314 15 6 2.0664 -0.7716 1.2237 16 1 1.2399 -1.1510 1.8245 17 7 2.9332 0.0947 2.0337 18 6 2.9732 -0.3588 3.4305 19 6 3.8706 0.5516 4.2286 20 8 4.4221 1.4864 3.6873 21 7 4.0595 0.3275 5.5442 22 6 4.8762 1.1554 6.2702 23 1 5.3680 1.9873 5.7880 24 6 5.0705 0.9247 7.6265 25 7 4.4717 -0.0873 8.2134 26 14 6.1828 2.0531 8.6159 27 1 5.3821 3.1721 9.1745 28 1 6.8042 1.2868 9.7258 29 1 7.2464 2.5974 7.7340 30 1 -0.3633 0.4787 0.9094 31 1 -0.3634 0.5481 -0.8692 32 1 -0.3633 -1.0269 -0.0400 33 1 1.3234 -1.4860 -1.5793 34 1 2.3401 -0.0793 -2.0206 35 1 4.3487 -0.0718 -2.8323 36 1 4.0041 -3.0681 -3.5680 37 1 3.1575 -1.6351 -4.2975 38 1 6.9532 -2.5900 -5.9258 39 1 5.2462 -3.1169 -6.3848 40 1 4.5268 -0.6854 -6.5002 41 1 6.2333 -0.1581 -6.0411 42 1 6.6979 -0.5423 -3.3457 43 1 6.5167 -2.2918 -2.8916 44 1 3.7673 -2.1324 1.2355 45 1 2.2641 -2.8389 0.5664 46 1 3.8621 0.1440 1.6429 47 1 1.9670 -0.3359 3.8489 48 1 3.3605 -1.3769 3.4709 49 1 3.6181 -0.4198 5.9771 50 1 4.6076 -0.2485 9.1601 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215511228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:26 Heat of formation + Delta-G solvation = -41.188009 kcal Electronic energy + Delta-G solvation = -28919.661655 eV Core-core repulsion = 24947.254969 eV Total energy + Delta-G solvation = -3972.406686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.67464 -40.45321 -39.86380 -38.69023 -36.18919 -35.47199 -34.53042 -33.47131 -33.25643 -30.20794 -28.05603 -27.31249 -26.76888 -26.22848 -24.99576 -23.37032 -23.12035 -21.37441 -20.83393 -20.18256 -19.90022 -19.34138 -18.37489 -17.74774 -17.21462 -16.84914 -16.71203 -16.39586 -16.20691 -16.04377 -15.91778 -15.54828 -15.21050 -15.08934 -14.57460 -14.17124 -13.92207 -13.70028 -13.63416 -13.53173 -13.48498 -13.24970 -13.10033 -12.97756 -12.88185 -12.76349 -12.48387 -12.45260 -12.31960 -12.15412 -11.99669 -11.83737 -11.64594 -11.53868 -11.32957 -11.28426 -10.78105 -10.53228 -10.39459 -10.05207 -9.96770 -9.26599 -8.49493 -5.98483 1.35687 1.39217 1.52318 1.53035 1.90607 2.01418 2.26812 2.82383 2.86624 3.17223 3.33403 3.39355 3.47161 3.57080 3.62378 3.66047 3.87453 3.91694 4.10627 4.14256 4.19788 4.29274 4.33954 4.38147 4.45143 4.51934 4.56984 4.68009 4.70336 4.71540 4.76592 4.79840 4.81616 4.82467 4.95153 4.99764 5.02168 5.15515 5.19605 5.22957 5.29727 5.33491 5.37087 5.38530 5.50637 5.89112 6.09767 6.23644 6.52936 6.56832 7.09260 7.09440 7.52284 8.07896 8.67887 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015637 B = 0.002240 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.158083 B =12495.573602 C =13605.489282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 H 0.076 0.924 4 C 0.106 3.894 5 N -0.619 5.619 6 C 0.533 3.467 7 O -0.595 6.595 8 C -0.122 4.122 9 C -0.065 4.065 10 C -0.173 4.173 11 C -0.168 4.168 12 C -0.137 4.137 13 C -0.088 4.088 14 C 0.071 3.929 15 C 0.078 3.922 16 H 0.114 0.886 17 N -0.667 5.667 18 C 0.064 3.936 19 C 0.435 3.565 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.077 0.923 24 C -0.014 4.014 25 N -0.919 5.919 26 Si 0.994 3.006 27 H -0.268 1.268 28 H -0.269 1.269 29 H -0.275 1.275 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.132 0.868 36 H 0.077 0.923 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.047 0.953 45 H 0.097 0.903 46 H 0.336 0.664 47 H 0.114 0.886 48 H 0.059 0.941 49 H 0.397 0.603 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.164 -6.118 -27.518 29.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 H 0.094 0.906 4 C -0.015 4.015 5 N -0.352 5.352 6 C 0.324 3.676 7 O -0.476 6.476 8 C -0.142 4.142 9 C -0.103 4.103 10 C -0.173 4.173 11 C -0.205 4.205 12 C -0.174 4.174 13 C -0.126 4.126 14 C -0.053 4.053 15 C -0.033 4.033 16 H 0.132 0.868 17 N -0.298 5.298 18 C -0.069 4.069 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.095 0.905 24 C -0.214 4.214 25 N -0.560 5.560 26 Si 0.817 3.183 27 H -0.194 1.194 28 H -0.194 1.194 29 H -0.200 1.200 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.150 0.850 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.066 0.934 45 H 0.115 0.885 46 H 0.154 0.846 47 H 0.132 0.868 48 H 0.077 0.923 49 H 0.231 0.769 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.728 -5.431 -27.310 29.496 hybrid contribution 1.419 -0.728 1.375 2.106 sum -8.309 -6.160 -25.935 27.921 Atomic orbital electron populations 1.21742 0.91604 1.03011 1.02705 1.22147 0.97639 0.99522 0.92084 0.90603 1.22814 0.85714 0.96057 0.96958 1.49073 1.13694 1.55291 1.17105 1.20832 0.79831 0.78772 0.88194 1.90693 1.43152 1.44774 1.68978 1.22644 1.00307 1.02330 0.88967 1.22300 0.97060 0.98635 0.92264 1.22086 0.98528 1.07732 0.88960 1.22901 1.01629 0.96217 0.99776 1.22907 1.03892 0.94536 0.96022 1.22369 0.94894 1.01720 0.93580 1.23164 0.98886 0.99050 0.84244 1.22870 0.95401 0.90248 0.94782 0.86804 1.60302 1.16939 1.51989 1.00523 1.21612 1.00224 0.95381 0.89640 1.20920 0.85944 0.87998 0.82880 1.90489 1.54524 1.35065 1.71121 1.41922 1.42897 1.28422 1.07664 1.19652 1.24665 1.10216 0.91933 0.90507 1.26067 0.99262 0.98693 0.97328 1.69672 1.43942 1.29575 1.12793 0.84916 0.77963 0.77872 0.77507 1.19352 1.19403 1.19994 0.92856 0.90712 0.90937 0.87996 0.88397 0.85039 0.90440 0.87846 0.88928 0.87602 0.86770 0.88258 0.90988 0.90964 0.93399 0.88538 0.84586 0.86837 0.92299 0.76921 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 8.92 71.98 0.64 -0.85 16 2 C -0.09 -1.56 3.45 -9.89 -0.03 -1.59 16 3 H 0.08 1.62 7.95 -2.39 -0.02 1.60 16 4 C 0.11 1.40 6.46 86.53 0.56 1.96 16 5 N -0.62 -13.51 3.32 -807.95 -2.68 -16.19 16 6 C 0.53 14.22 7.44 87.66 0.65 14.87 16 7 O -0.60 -22.14 16.16 -3.05 -0.05 -22.19 16 8 C -0.12 -2.24 3.30 -10.94 -0.04 -2.28 16 9 C -0.07 -0.87 7.65 30.98 0.24 -0.64 16 10 C -0.17 -2.50 3.08 -52.37 -0.16 -2.66 16 11 C -0.17 -2.05 10.53 30.46 0.32 -1.73 16 12 C -0.14 -1.43 10.53 30.46 0.32 -1.11 16 13 C -0.09 -1.79 7.43 30.98 0.23 -1.56 16 14 C 0.07 1.64 6.49 86.53 0.56 2.21 16 15 C 0.08 1.70 3.03 45.82 0.14 1.84 16 16 H 0.11 2.08 7.39 -2.39 -0.02 2.06 16 17 N -0.67 -21.67 5.80 -490.90 -2.85 -24.51 16 18 C 0.06 2.26 6.02 85.56 0.52 2.77 16 19 C 0.43 21.63 7.82 87.66 0.69 22.32 16 20 O -0.63 -36.33 15.78 -3.07 -0.05 -36.38 16 21 N -0.57 -30.41 5.29 -306.98 -1.62 -32.03 16 22 C -0.34 -19.67 9.68 84.04 0.81 -18.85 16 23 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 24 C -0.01 -0.75 5.50 84.92 0.47 -0.29 16 25 N -0.92 -50.59 13.05 21.66 0.28 -50.31 16 26 Si 0.99 44.09 29.55 68.60 2.03 46.12 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 29 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 30 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.59 8.10 -2.39 -0.02 0.57 16 33 H 0.10 0.83 7.83 -2.38 -0.02 0.82 16 34 H 0.10 0.97 7.05 -2.38 -0.02 0.95 16 35 H 0.13 1.94 7.56 -2.39 -0.02 1.92 16 36 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 37 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.07 1.85 7.42 -2.39 -0.02 1.83 16 44 H 0.05 1.46 7.73 -2.39 -0.02 1.44 16 45 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.34 12.76 8.12 -89.70 -0.73 12.03 16 47 H 0.11 3.45 8.08 -2.39 -0.02 3.43 16 48 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 49 H 0.40 19.92 7.90 -92.71 -0.73 19.19 16 50 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -77.99 407.67 0.47 -77.52 By element: Atomic # 1 Polarization: 44.08 SS G_CDS: -0.51 Total: 43.57 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 5.91 Total: 14.40 kcal Atomic # 7 Polarization: -116.18 SS G_CDS: -6.86 Total: -123.04 kcal Atomic # 8 Polarization: -58.47 SS G_CDS: -0.10 Total: -58.57 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -77.99 0.47 -77.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215511228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.332 kcal (2) G-P(sol) polarization free energy of solvation -77.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds