Wall clock time and date at job start Tue Mar 31 2020 18:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47164 * 2 1 4 4 C 1.50692 * 109.47714 * 239.99824 * 2 1 3 5 5 O 1.21284 * 120.00073 * 240.00186 * 4 2 1 6 6 N 1.34773 * 120.00193 * 59.99682 * 4 2 1 7 7 C 1.47231 * 136.44471 * 359.63437 * 6 4 2 8 8 C 1.54299 * 87.56009 * 151.79282 * 7 6 4 9 9 H 1.08997 * 114.80033 * 140.45532 * 8 7 6 10 10 C 1.51758 * 112.54809 * 271.74328 * 8 7 6 11 11 C 1.51676 * 113.42035 * 124.65935 * 10 8 7 12 12 N 1.46392 * 111.36450 * 312.64479 * 11 10 8 13 13 C 1.46900 * 110.99948 * 188.94216 * 12 11 10 14 14 C 1.50699 * 109.47256 * 295.45380 * 13 12 11 15 15 O 1.21296 * 120.00166 * 5.68565 * 14 13 12 16 16 N 1.34775 * 120.00353 * 185.68215 * 14 13 12 17 17 C 1.37092 * 120.00198 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00525 * 0.02562 * 17 16 14 19 19 C 1.38950 * 120.00126 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00025 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 120.00169 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46934 * 89.99939 * 21 19 17 23 23 H 1.48500 * 109.47147 * 210.00313 * 21 19 17 24 24 H 1.48504 * 109.47006 * 330.00039 * 21 19 17 25 25 C 1.46945 * 110.50355 * 65.34534 * 12 11 10 26 26 C 1.46600 * 136.45627 * 180.02562 * 6 4 2 27 27 H 1.09004 * 112.83176 * 94.35502 * 26 6 4 28 28 C 1.53004 * 109.47187 * 119.99758 * 2 1 3 29 29 C 1.53001 * 117.50019 * 248.62558 * 28 2 1 30 30 C 1.52994 * 60.00046 * 252.51034 * 29 28 2 31 31 H 1.09004 * 109.46669 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47510 * 300.00193 * 1 2 3 33 33 H 1.08999 * 109.46903 * 60.00415 * 1 2 3 34 34 H 1.09003 * 113.52225 * 266.42843 * 7 6 4 35 35 H 1.08997 * 113.52100 * 37.02847 * 7 6 4 36 36 H 1.09003 * 108.68659 * 245.67367 * 10 8 7 37 37 H 1.09002 * 108.69768 * 3.76287 * 10 8 7 38 38 H 1.08998 * 109.10371 * 73.13044 * 11 10 8 39 39 H 1.09004 * 109.10020 * 192.22787 * 11 10 8 40 40 H 1.08996 * 109.47492 * 55.45620 * 13 12 11 41 41 H 1.09002 * 109.47664 * 175.45591 * 13 12 11 42 42 H 0.97003 * 119.99759 * 0.02562 * 16 14 13 43 43 H 0.96996 * 119.99925 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.49404 * 175.66972 * 25 12 11 45 45 H 1.09003 * 109.48914 * 55.59107 * 25 12 11 46 46 H 1.09001 * 115.54632 * 34.32597 * 28 2 1 47 47 H 1.09006 * 117.49716 * 0.02562 * 29 28 2 48 48 H 1.09000 * 117.49978 * 145.01499 * 29 28 2 49 49 H 1.09004 * 117.49407 * 252.51287 * 30 29 28 50 50 H 1.08994 * 117.49994 * 107.49061 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 8 2.7298 -1.6965 -1.1190 6 7 1.7069 -0.2501 -2.4545 7 6 0.9119 0.8629 -2.9992 8 6 1.8352 0.8308 -4.2351 9 1 1.3291 0.9855 -5.1880 10 6 3.0652 1.7033 -4.0654 11 6 4.3682 0.9555 -4.2737 12 7 4.3804 -0.3100 -3.5379 13 6 5.7140 -0.9250 -3.5704 14 6 6.0620 -1.2954 -4.9891 15 8 5.3237 -0.9773 -5.8975 16 7 7.1935 -1.9800 -5.2488 17 6 7.5103 -2.3165 -6.5394 18 1 6.8534 -2.0326 -7.3483 19 6 8.6766 -3.0227 -6.8070 20 7 9.4762 -3.3678 -5.8230 21 14 9.1079 -3.4818 -8.5657 22 1 9.9192 -2.3979 -9.1754 23 1 9.8871 -4.7460 -8.5704 24 1 7.8600 -3.6667 -9.3493 25 6 3.3645 -1.2266 -4.0737 26 6 1.9796 -0.6363 -3.8421 27 1 1.1985 -1.2669 -4.2669 28 6 2.0400 -0.7212 1.2493 29 6 2.7419 0.1227 2.3152 30 6 3.5550 -0.8279 1.4344 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.1206 0.5925 -3.2207 35 1 0.9928 1.7810 -2.4173 36 1 3.0139 2.5225 -4.7827 37 1 3.0612 2.1209 -3.0586 38 1 4.4963 0.7513 -5.3367 39 1 5.1949 1.5761 -3.9277 40 1 6.4500 -0.2174 -3.1887 41 1 5.7161 -1.8213 -2.9501 42 1 7.7838 -2.2347 -4.5223 43 1 10.2902 -3.8611 -6.0097 44 1 3.4391 -2.1887 -3.5667 45 1 3.5270 -1.3648 -5.1426 46 1 1.4310 -1.5584 1.5903 47 1 2.8399 1.1919 2.1266 48 1 2.5946 -0.1591 3.3578 49 1 3.9427 -1.7353 1.8976 50 1 4.1884 -0.3844 0.6662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221466097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:13 Heat of formation + Delta-G solvation = 3.618849 kcal Electronic energy + Delta-G solvation = -30639.820678 eV Core-core repulsion = 26669.356963 eV Total energy + Delta-G solvation = -3970.463714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.11911 -39.11606 -38.36568 -36.59872 -35.63883 -33.79435 -32.71775 -31.76303 -31.26090 -29.25271 -28.31068 -25.78353 -24.84853 -23.96862 -23.48214 -22.31143 -21.73676 -21.22822 -19.59457 -19.25591 -18.09149 -17.57912 -16.74976 -16.36337 -16.01775 -15.78798 -15.21283 -14.94448 -14.82611 -14.53567 -14.08754 -14.02233 -13.85697 -13.75913 -13.43705 -13.08461 -12.95282 -12.70610 -12.45296 -12.21452 -12.11003 -11.82682 -11.70162 -11.56220 -11.48972 -11.26337 -11.13558 -11.12168 -10.97868 -10.65922 -10.42258 -10.41341 -10.29354 -10.23037 -10.08261 -9.96641 -9.46302 -9.20674 -9.11566 -8.43195 -7.97268 -7.28233 -6.42954 -3.84457 2.91115 2.97865 3.15358 3.24601 3.30130 3.82043 3.86615 4.15258 4.18774 4.45896 4.50351 4.51441 4.72032 4.83042 4.99822 5.04755 5.07451 5.10460 5.14498 5.23223 5.25858 5.32661 5.38742 5.43227 5.51225 5.54227 5.59890 5.65718 5.72365 5.78649 5.84457 5.92256 5.94465 6.00502 6.08980 6.12231 6.14757 6.21725 6.25867 6.29212 6.33808 6.37984 6.60103 6.77056 7.49569 7.52776 7.61464 8.03041 8.03740 8.50679 8.58624 9.15058 9.52527 10.02987 10.73541 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016915 B = 0.002982 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.978825 B = 9386.351133 C =10399.852087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.073 4.073 3 H 0.091 0.909 4 C 0.552 3.448 5 O -0.520 6.520 6 N -0.628 5.628 7 C 0.099 3.901 8 C -0.115 4.115 9 H 0.093 0.907 10 C -0.085 4.085 11 C 0.038 3.962 12 N -0.496 5.496 13 C 0.046 3.954 14 C 0.408 3.592 15 O -0.596 6.596 16 N -0.557 5.557 17 C -0.302 4.302 18 H 0.102 0.898 19 C 0.023 3.977 20 N -0.898 5.898 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.270 1.270 25 C 0.038 3.962 26 C 0.144 3.856 27 H 0.086 0.914 28 C -0.135 4.135 29 C -0.186 4.186 30 C -0.151 4.151 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.393 0.607 43 H 0.272 0.728 44 H 0.074 0.926 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.092 0.908 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.388 10.265 11.898 23.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 H 0.109 0.891 4 C 0.341 3.659 5 O -0.394 6.394 6 N -0.365 5.365 7 C -0.024 4.024 8 C -0.134 4.134 9 H 0.111 0.889 10 C -0.123 4.123 11 C -0.090 4.090 12 N -0.219 5.219 13 C -0.086 4.086 14 C 0.194 3.806 15 O -0.484 6.484 16 N -0.192 5.192 17 C -0.432 4.432 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.539 5.539 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.090 4.090 26 C 0.041 3.959 27 H 0.103 0.897 28 C -0.153 4.153 29 C -0.223 4.223 30 C -0.188 4.188 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.121 0.879 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.110 0.890 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.355 9.832 12.108 23.334 hybrid contribution 0.847 -0.618 -1.206 1.598 sum -16.508 9.214 10.902 21.824 Atomic orbital electron populations 1.21744 0.93116 1.02520 1.02330 1.20797 0.96964 0.99844 0.91870 0.89116 1.19845 0.80022 0.84082 0.81952 1.90701 1.37255 1.26147 1.85331 1.49422 1.51120 1.31416 1.04499 1.23332 0.95377 0.90592 0.93147 1.22532 0.97157 0.95946 0.97779 0.88908 1.20721 0.93040 0.97100 1.01442 1.21856 0.95989 0.91003 1.00158 1.62328 1.03150 1.03641 1.52756 1.22008 0.91303 1.00483 0.94801 1.21170 0.83804 0.84338 0.91287 1.90377 1.51281 1.59518 1.47211 1.42069 1.19853 1.47868 1.09378 1.19702 1.05860 1.32567 0.85032 0.88008 1.25291 0.95922 0.97027 0.99628 1.69616 1.13290 1.39229 1.31753 0.85870 0.78654 0.77880 0.81947 1.20399 1.20871 1.19448 1.22245 0.89496 0.95796 1.01495 1.22236 0.97800 0.95603 0.80305 0.89673 1.21902 0.96470 1.01322 0.95643 1.23075 1.05681 0.97507 0.96080 1.22782 0.93442 1.00808 1.01737 0.92270 0.91645 0.92135 0.90241 0.90712 0.91725 0.92322 0.90813 0.92052 0.89677 0.89384 0.77371 0.91785 0.90735 0.89752 0.87863 0.89102 0.89036 0.88984 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.06 37.16 0.34 -0.79 16 2 C -0.07 -0.77 2.77 -91.77 -0.25 -1.03 16 3 H 0.09 0.89 7.90 -51.93 -0.41 0.48 16 4 C 0.55 7.77 7.20 -10.99 -0.08 7.69 16 5 O -0.52 -9.39 14.95 5.55 0.08 -9.31 16 6 N -0.63 -7.89 3.25 -184.93 -0.60 -8.49 16 7 C 0.10 0.88 6.14 -10.75 -0.07 0.81 16 8 C -0.11 -1.25 4.57 -90.80 -0.41 -1.67 16 9 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 10 C -0.09 -1.03 5.74 -28.03 -0.16 -1.20 16 11 C 0.04 0.62 4.99 -4.77 -0.02 0.59 16 12 N -0.50 -8.67 4.74 -237.74 -1.13 -9.80 16 13 C 0.05 0.88 5.84 -4.98 -0.03 0.85 16 14 C 0.41 9.56 7.18 -10.99 -0.08 9.49 16 15 O -0.60 -15.19 11.19 5.54 0.06 -15.13 16 16 N -0.56 -14.27 5.29 -10.97 -0.06 -14.33 16 17 C -0.30 -8.43 9.68 -14.94 -0.14 -8.57 16 18 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 19 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 20 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 21 Si 0.93 21.16 29.55 -169.99 -5.02 16.14 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 25 C 0.04 0.67 4.34 -4.15 -0.02 0.65 16 26 C 0.14 1.95 4.24 -76.24 -0.32 1.63 16 27 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 28 C -0.13 -1.46 4.73 -90.62 -0.43 -1.89 16 29 C -0.19 -1.73 10.18 -26.73 -0.27 -2.01 16 30 C -0.15 -1.80 8.97 -26.73 -0.24 -2.04 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.43 6.38 -51.93 -0.33 0.10 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.56 7.81 -51.93 -0.41 0.16 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.69 7.48 -51.93 -0.39 0.30 16 38 H 0.07 1.43 5.67 -51.93 -0.29 1.14 16 39 H 0.06 0.98 7.99 -51.93 -0.41 0.56 16 40 H 0.09 1.51 8.03 -51.93 -0.42 1.09 16 41 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 42 H 0.39 9.82 7.90 -40.82 -0.32 9.50 16 43 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.07 1.47 7.70 -51.93 -0.40 1.07 16 45 H 0.08 1.72 5.65 -51.93 -0.29 1.43 16 46 H 0.10 1.11 8.11 -51.93 -0.42 0.69 16 47 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 48 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 50 H 0.10 1.33 8.10 -51.93 -0.42 0.91 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -31.93 389.98 -10.61 -42.54 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -8.25 Total: 13.45 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.29 Total: 3.07 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: -1.06 Total: -56.63 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: 0.15 Total: -24.44 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.93 -10.61 -42.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221466097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.155 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds