Wall clock time and date at job start Tue Mar 31 2020 18:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.47164 * 2 1 4 4 C 1.50692 * 109.47714 * 239.99824 * 2 1 3 5 5 O 1.21284 * 120.00073 * 240.00186 * 4 2 1 6 6 N 1.34773 * 120.00193 * 59.99682 * 4 2 1 7 7 C 1.47231 * 136.44471 * 359.63437 * 6 4 2 8 8 C 1.54299 * 87.56009 * 151.79282 * 7 6 4 9 9 H 1.08997 * 114.80033 * 140.45532 * 8 7 6 10 10 C 1.51758 * 112.54809 * 271.74328 * 8 7 6 11 11 C 1.51676 * 113.42035 * 124.65935 * 10 8 7 12 12 N 1.46392 * 111.36450 * 312.64479 * 11 10 8 13 13 C 1.46900 * 110.99948 * 188.94216 * 12 11 10 14 14 C 1.50699 * 109.47256 * 295.45380 * 13 12 11 15 15 O 1.21296 * 120.00166 * 5.68565 * 14 13 12 16 16 N 1.34775 * 120.00353 * 185.68215 * 14 13 12 17 17 C 1.37092 * 120.00198 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00525 * 0.02562 * 17 16 14 19 19 C 1.38950 * 120.00126 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00025 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 120.00169 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46934 * 89.99939 * 21 19 17 23 23 H 1.48500 * 109.47147 * 210.00313 * 21 19 17 24 24 H 1.48504 * 109.47006 * 330.00039 * 21 19 17 25 25 C 1.46945 * 110.50355 * 65.34534 * 12 11 10 26 26 C 1.46600 * 136.45627 * 180.02562 * 6 4 2 27 27 H 1.09004 * 112.83176 * 94.35502 * 26 6 4 28 28 C 1.53004 * 109.47187 * 119.99758 * 2 1 3 29 29 C 1.53001 * 117.50019 * 248.62558 * 28 2 1 30 30 C 1.52994 * 60.00046 * 252.51034 * 29 28 2 31 31 H 1.09004 * 109.46669 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47510 * 300.00193 * 1 2 3 33 33 H 1.08999 * 109.46903 * 60.00415 * 1 2 3 34 34 H 1.09003 * 113.52225 * 266.42843 * 7 6 4 35 35 H 1.08997 * 113.52100 * 37.02847 * 7 6 4 36 36 H 1.09003 * 108.68659 * 245.67367 * 10 8 7 37 37 H 1.09002 * 108.69768 * 3.76287 * 10 8 7 38 38 H 1.08998 * 109.10371 * 73.13044 * 11 10 8 39 39 H 1.09004 * 109.10020 * 192.22787 * 11 10 8 40 40 H 1.08996 * 109.47492 * 55.45620 * 13 12 11 41 41 H 1.09002 * 109.47664 * 175.45591 * 13 12 11 42 42 H 0.97003 * 119.99759 * 0.02562 * 16 14 13 43 43 H 0.96996 * 119.99925 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.49404 * 175.66972 * 25 12 11 45 45 H 1.09003 * 109.48914 * 55.59107 * 25 12 11 46 46 H 1.09001 * 115.54632 * 34.32597 * 28 2 1 47 47 H 1.09006 * 117.49716 * 0.02562 * 29 28 2 48 48 H 1.09000 * 117.49978 * 145.01499 * 29 28 2 49 49 H 1.09004 * 117.49407 * 252.51287 * 30 29 28 50 50 H 1.08994 * 117.49994 * 107.49061 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 8 2.7298 -1.6965 -1.1190 6 7 1.7069 -0.2501 -2.4545 7 6 0.9119 0.8629 -2.9992 8 6 1.8352 0.8308 -4.2351 9 1 1.3291 0.9855 -5.1880 10 6 3.0652 1.7033 -4.0654 11 6 4.3682 0.9555 -4.2737 12 7 4.3804 -0.3100 -3.5379 13 6 5.7140 -0.9250 -3.5704 14 6 6.0620 -1.2954 -4.9891 15 8 5.3237 -0.9773 -5.8975 16 7 7.1935 -1.9800 -5.2488 17 6 7.5103 -2.3165 -6.5394 18 1 6.8534 -2.0326 -7.3483 19 6 8.6766 -3.0227 -6.8070 20 7 9.4762 -3.3678 -5.8230 21 14 9.1079 -3.4818 -8.5657 22 1 9.9192 -2.3979 -9.1754 23 1 9.8871 -4.7460 -8.5704 24 1 7.8600 -3.6667 -9.3493 25 6 3.3645 -1.2266 -4.0737 26 6 1.9796 -0.6363 -3.8421 27 1 1.1985 -1.2669 -4.2669 28 6 2.0400 -0.7212 1.2493 29 6 2.7419 0.1227 2.3152 30 6 3.5550 -0.8279 1.4344 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.1206 0.5925 -3.2207 35 1 0.9928 1.7810 -2.4173 36 1 3.0139 2.5225 -4.7827 37 1 3.0612 2.1209 -3.0586 38 1 4.4963 0.7513 -5.3367 39 1 5.1949 1.5761 -3.9277 40 1 6.4500 -0.2174 -3.1887 41 1 5.7161 -1.8213 -2.9501 42 1 7.7838 -2.2347 -4.5223 43 1 10.2902 -3.8611 -6.0097 44 1 3.4391 -2.1887 -3.5667 45 1 3.5270 -1.3648 -5.1426 46 1 1.4310 -1.5584 1.5903 47 1 2.8399 1.1919 2.1266 48 1 2.5946 -0.1591 3.3578 49 1 3.9427 -1.7353 1.8976 50 1 4.1884 -0.3844 0.6662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221466097.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:12 Heat of formation + Delta-G solvation = -18.353499 kcal Electronic energy + Delta-G solvation = -30640.773470 eV Core-core repulsion = 26669.356963 eV Total energy + Delta-G solvation = -3971.416507 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.18951 -40.57436 -39.68600 -37.62673 -37.14673 -35.76450 -33.63566 -33.36117 -32.80884 -30.52071 -29.55361 -27.39124 -25.85822 -25.40785 -24.58415 -23.15899 -22.91025 -22.19906 -21.18086 -20.52195 -19.96468 -18.88860 -17.90299 -17.62067 -17.35197 -17.02621 -16.64223 -16.23575 -16.09051 -15.91120 -15.64829 -15.54904 -15.23949 -14.99376 -14.54412 -14.33907 -14.29171 -13.66255 -13.49893 -13.41392 -13.30169 -13.09642 -13.02402 -12.98131 -12.63160 -12.49411 -12.47100 -12.33263 -12.22871 -12.16376 -11.96756 -11.87014 -11.58791 -11.30918 -11.27543 -11.08896 -10.94246 -10.90621 -10.26307 -10.04543 -9.43742 -8.95238 -8.49482 -6.00966 1.32931 1.36957 1.50281 1.93554 1.94577 2.00171 2.25274 2.97072 2.98938 3.15088 3.19769 3.36038 3.64959 3.67698 3.83788 3.99502 4.03382 4.20094 4.22848 4.27152 4.33153 4.40300 4.41903 4.49316 4.53911 4.55542 4.57197 4.59167 4.63211 4.78382 4.84516 4.85759 4.90816 4.96744 5.00972 5.09165 5.10926 5.12752 5.20650 5.23761 5.27908 5.31255 5.35439 5.41091 5.49587 5.87850 6.04429 6.19278 6.52645 7.05592 7.06903 7.47791 7.48513 8.02162 8.65743 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016915 B = 0.002982 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.978825 B = 9386.351133 C =10399.852087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 H 0.105 0.895 4 C 0.541 3.459 5 O -0.574 6.574 6 N -0.631 5.631 7 C 0.113 3.887 8 C -0.112 4.112 9 H 0.116 0.884 10 C -0.081 4.081 11 C 0.038 3.962 12 N -0.487 5.487 13 C 0.055 3.945 14 C 0.411 3.589 15 O -0.615 6.615 16 N -0.571 5.571 17 C -0.334 4.334 18 H 0.081 0.919 19 C -0.015 4.015 20 N -0.921 5.921 21 Si 0.995 3.005 22 H -0.269 1.269 23 H -0.271 1.271 24 H -0.272 1.272 25 C 0.047 3.953 26 C 0.132 3.868 27 H 0.099 0.901 28 C -0.141 4.141 29 C -0.156 4.156 30 C -0.178 4.178 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.038 0.962 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.393 0.607 43 H 0.278 0.722 44 H 0.041 0.959 45 H 0.050 0.950 46 H 0.101 0.899 47 H 0.105 0.895 48 H 0.108 0.892 49 H 0.082 0.918 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.731 12.693 12.589 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.087 4.087 3 H 0.123 0.877 4 C 0.332 3.668 5 O -0.453 6.453 6 N -0.367 5.367 7 C -0.009 4.009 8 C -0.131 4.131 9 H 0.134 0.866 10 C -0.119 4.119 11 C -0.090 4.090 12 N -0.209 5.209 13 C -0.077 4.077 14 C 0.198 3.802 15 O -0.503 6.503 16 N -0.207 5.207 17 C -0.463 4.463 18 H 0.099 0.901 19 C -0.215 4.215 20 N -0.562 5.562 21 Si 0.819 3.181 22 H -0.194 1.194 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.082 4.082 26 C 0.028 3.972 27 H 0.116 0.884 28 C -0.160 4.160 29 C -0.193 4.193 30 C -0.215 4.215 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.121 0.879 41 H 0.102 0.898 42 H 0.227 0.773 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.119 0.881 47 H 0.123 0.877 48 H 0.126 0.874 49 H 0.101 0.899 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.734 12.306 12.804 26.548 hybrid contribution 1.573 -1.385 -1.419 2.531 sum -18.161 10.920 11.385 24.056 Atomic orbital electron populations 1.21735 0.90769 1.02412 1.04136 1.20814 0.98712 0.99625 0.89509 0.87734 1.20620 0.79281 0.83676 0.83236 1.90682 1.39714 1.28669 1.86229 1.49559 1.51264 1.32262 1.03574 1.23525 0.95820 0.90208 0.91312 1.22565 0.97399 0.92974 1.00168 0.86639 1.20716 0.91079 0.97212 1.02849 1.21906 0.99014 0.90475 0.97585 1.62432 1.01882 1.04042 1.52574 1.21998 0.93044 1.00957 0.91733 1.21989 0.82625 0.82735 0.92820 1.90377 1.51614 1.59767 1.48588 1.42164 1.20725 1.48957 1.08824 1.19685 1.06642 1.34476 0.85540 0.90111 1.26126 0.95233 0.96281 1.03814 1.69691 1.13596 1.39354 1.33530 0.84896 0.78281 0.78099 0.76854 1.19382 1.19589 1.19659 1.22053 0.92458 0.95071 0.98627 1.22385 0.95114 0.97720 0.81996 0.88362 1.22002 0.95243 1.01993 0.96716 1.23145 1.02237 0.97608 0.96271 1.22662 0.94290 1.01743 1.02810 0.93361 0.89568 0.90561 0.87055 0.88129 0.89514 0.91117 0.94383 0.91956 0.87873 0.89798 0.77327 0.91241 0.94013 0.93184 0.88134 0.87660 0.87376 0.89926 0.90979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 9.06 71.98 0.65 -1.01 16 2 C -0.07 -1.23 2.77 -11.54 -0.03 -1.26 16 3 H 0.10 1.68 7.90 -2.38 -0.02 1.66 16 4 C 0.54 14.83 7.20 87.65 0.63 15.46 16 5 O -0.57 -21.61 14.95 -3.04 -0.05 -21.65 16 6 N -0.63 -14.65 3.25 -857.38 -2.79 -17.43 16 7 C 0.11 1.48 6.14 81.63 0.50 1.98 16 8 C -0.11 -2.10 4.57 -10.91 -0.05 -2.15 16 9 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 10 C -0.08 -1.76 5.74 29.75 0.17 -1.59 16 11 C 0.04 1.23 4.99 85.97 0.43 1.66 16 12 N -0.49 -17.56 4.74 -906.08 -4.29 -21.85 16 13 C 0.05 2.21 5.84 85.56 0.50 2.71 16 14 C 0.41 20.36 7.18 87.66 0.63 20.99 16 15 O -0.62 -33.11 11.19 -3.08 -0.03 -33.14 16 16 N -0.57 -30.77 5.29 -306.99 -1.62 -32.39 16 17 C -0.33 -19.43 9.68 84.04 0.81 -18.62 16 18 H 0.08 4.95 7.16 -2.91 -0.02 4.93 16 19 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 20 N -0.92 -51.56 13.05 21.66 0.28 -51.28 16 21 Si 1.00 43.86 29.55 68.60 2.03 45.89 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 C 0.05 1.73 4.34 86.07 0.37 2.11 16 26 C 0.13 3.47 4.24 39.55 0.17 3.64 16 27 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 28 C -0.14 -2.90 4.73 -10.79 -0.05 -2.95 16 29 C -0.16 -2.56 10.18 30.59 0.31 -2.25 16 30 C -0.18 -4.33 8.97 30.59 0.27 -4.06 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.71 6.38 -2.39 -0.02 0.70 16 34 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.10 0.90 7.81 -2.39 -0.02 0.88 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.40 7.48 -2.39 -0.02 1.38 16 38 H 0.04 1.52 5.67 -2.39 -0.01 1.51 16 39 H 0.06 1.97 7.99 -2.38 -0.02 1.95 16 40 H 0.10 3.77 8.03 -2.39 -0.02 3.75 16 41 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 42 H 0.39 20.69 7.90 -92.71 -0.73 19.96 16 43 H 0.28 14.54 8.31 -92.71 -0.77 13.77 16 44 H 0.04 1.78 7.70 -2.39 -0.02 1.76 16 45 H 0.05 2.19 5.65 -2.39 -0.01 2.18 16 46 H 0.10 2.09 8.11 -2.39 -0.02 2.07 16 47 H 0.11 1.45 8.05 -2.38 -0.02 1.43 16 48 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 49 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 50 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 Total: -1.00 -74.90 389.98 -0.47 -75.37 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: 0.21 Total: 42.16 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 5.79 Total: 14.32 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -8.42 Total: -122.95 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -0.08 Total: -54.79 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -74.90 -0.47 -75.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221466097.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.016 kcal (2) G-P(sol) polarization free energy of solvation -74.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds