Wall clock time and date at job start Tue Mar 31 2020 19:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99933 * 2 1 4 4 H 1.08998 * 109.47176 * 330.00871 * 3 2 1 5 5 C 1.53008 * 109.46668 * 90.00331 * 3 2 1 6 6 C 1.52999 * 109.47394 * 210.00401 * 3 2 1 7 7 C 1.50696 * 109.47281 * 64.99781 * 6 3 2 8 8 O 1.21281 * 119.99744 * 0.02562 * 7 6 3 9 9 N 1.34775 * 119.99964 * 179.97438 * 7 6 3 10 10 C 1.46504 * 119.99552 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46524 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46668 * 179.97438 * 11 10 9 13 13 N 1.46507 * 109.47067 * 179.97438 * 12 11 10 14 14 C 1.36941 * 119.99553 * 90.00124 * 13 12 11 15 15 H 1.08004 * 120.00306 * 319.40907 * 14 13 12 16 16 C 1.38809 * 120.00042 * 139.41610 * 14 13 12 17 17 N 1.31620 * 120.00202 * 161.19869 * 16 14 13 18 18 Si 1.86805 * 119.99758 * 341.19610 * 16 14 13 19 19 H 1.48504 * 109.46991 * 95.35033 * 18 16 14 20 20 H 1.48499 * 109.47131 * 215.34634 * 18 16 14 21 21 H 1.48494 * 109.47215 * 335.35416 * 18 16 14 22 22 C 1.46499 * 120.00378 * 270.00505 * 13 12 11 23 23 C 1.50698 * 109.47171 * 84.84384 * 22 13 12 24 24 C 1.38669 * 120.41826 * 264.77967 * 23 22 13 25 25 C 1.38625 * 118.42271 * 179.78420 * 24 23 22 26 26 C 1.38231 * 119.15930 * 0.51613 * 25 24 23 27 27 N 1.31855 * 120.75967 * 359.72044 * 26 25 24 28 28 C 1.31880 * 121.72767 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46746 * 299.99359 * 1 2 3 30 30 H 1.08998 * 109.47407 * 59.99673 * 1 2 3 31 31 H 1.09002 * 109.47077 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46877 * 180.02562 * 5 3 2 33 33 H 1.08998 * 109.46881 * 60.00359 * 5 3 2 34 34 H 1.09000 * 109.47242 * 299.99916 * 5 3 2 35 35 H 1.08993 * 109.47116 * 185.00380 * 6 3 2 36 36 H 1.09003 * 109.46863 * 305.00198 * 6 3 2 37 37 H 0.96995 * 119.99969 * 0.02562 * 9 7 6 38 38 H 1.09003 * 109.47402 * 300.00178 * 10 9 7 39 39 H 1.08995 * 109.47022 * 60.00793 * 10 9 7 40 40 H 1.08995 * 109.47696 * 299.99978 * 11 10 9 41 41 H 1.08998 * 109.47646 * 60.00613 * 11 10 9 42 42 H 1.09003 * 109.47383 * 299.99845 * 12 11 10 43 43 H 1.09003 * 109.47197 * 60.00212 * 12 11 10 44 44 H 0.97007 * 119.99625 * 179.97438 * 17 16 14 45 45 H 1.08992 * 109.46741 * 204.84785 * 22 13 12 46 46 H 1.09003 * 109.46663 * 324.84312 * 22 13 12 47 47 H 1.08009 * 120.79217 * 0.02562 * 24 23 22 48 48 H 1.07995 * 120.42526 * 180.21725 * 25 24 23 49 49 H 1.07996 * 119.62122 * 179.74501 * 26 25 24 50 50 H 1.07999 * 119.61806 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7713 1.4426 6 6 3.3588 1.2634 -0.7213 7 6 3.1415 0.9237 -2.1733 8 8 2.0185 0.7345 -2.5903 9 7 4.1951 0.8313 -3.0088 10 6 3.9837 0.5017 -4.4205 11 6 5.3324 0.4595 -5.1417 12 6 5.1117 0.1146 -6.6160 13 7 6.4030 0.0747 -7.3068 14 6 7.1072 -1.0978 -7.3748 15 1 7.1556 -1.7493 -6.5147 16 6 7.7589 -1.4489 -8.5490 17 7 8.7180 -2.3500 -8.5252 18 14 7.2746 -0.6426 -10.1630 19 1 8.1761 0.5063 -10.4324 20 1 7.3904 -1.6316 -11.2647 21 1 5.8725 -0.1615 -10.0748 22 6 6.9410 1.2892 -7.9248 23 6 7.6800 2.0953 -6.8880 24 6 7.0425 3.1264 -6.2147 25 6 7.7602 3.8381 -5.2660 26 6 9.0814 3.5058 -5.0321 27 7 9.6568 2.5219 -5.6950 28 6 9.0033 1.8204 -6.6006 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.6606 2.7672 1.4427 33 1 2.8830 1.0773 1.9563 34 1 1.2569 1.8013 1.9565 35 1 3.8426 2.2370 -0.6443 36 1 3.9931 0.5052 -0.2619 37 1 5.0932 0.9830 -2.6753 38 1 3.5000 -0.4721 -4.4978 39 1 3.3494 1.2599 -4.8796 40 1 5.8164 1.4330 -5.0645 41 1 5.9664 -0.2990 -4.6826 42 1 4.6279 -0.8592 -6.6929 43 1 4.4775 0.8727 -7.0755 44 1 9.1731 -2.5956 -9.3459 45 1 7.6251 1.0156 -8.7279 46 1 6.1224 1.8832 -8.3313 47 1 6.0100 3.3668 -6.4217 48 1 7.2945 4.6452 -4.7201 49 1 9.6487 4.0580 -4.2976 50 1 9.5084 1.0219 -7.1238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230704265.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:03 Heat of formation + Delta-G solvation = -34.621896 kcal Electronic energy + Delta-G solvation = -29102.758653 eV Core-core repulsion = 25130.636695 eV Total energy + Delta-G solvation = -3972.121958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.88090 -39.69497 -38.04430 -36.66921 -34.96360 -33.11534 -32.38767 -32.07552 -31.42755 -30.18866 -28.33475 -26.73404 -26.07196 -25.36606 -23.03854 -22.64767 -21.79317 -21.37628 -20.71161 -19.99039 -17.18532 -17.06182 -16.99869 -16.60175 -16.16592 -15.94069 -15.49118 -15.31140 -15.17893 -14.90086 -14.61303 -14.26648 -13.86312 -13.57716 -13.40336 -13.15600 -13.09096 -12.88526 -12.74698 -12.66791 -12.59113 -12.27049 -12.22807 -12.00816 -11.65784 -11.60632 -11.38613 -11.25171 -10.95560 -10.90360 -10.73018 -10.23361 -10.06570 -9.86081 -9.81982 -9.70917 -9.28223 -9.00400 -8.95056 -8.66736 -8.45592 -6.96680 -6.11428 -3.59944 1.58056 1.70915 2.70511 3.20876 3.22847 3.39208 3.42406 3.62311 4.23579 4.39887 4.51961 4.59907 4.89071 4.89305 4.90594 5.08358 5.14001 5.15447 5.17657 5.19755 5.29874 5.35834 5.37054 5.38203 5.41540 5.44816 5.53092 5.59959 5.61408 5.67685 5.75520 5.81115 5.85997 5.96923 6.05537 6.17847 6.27924 6.31156 6.39198 6.49562 6.57305 6.63696 6.81836 6.83232 7.06545 7.20993 7.56276 7.92833 8.27455 8.29222 8.45378 8.82945 9.55439 9.95186 11.02808 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.002768 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.698012 B =10111.817821 C =11552.377354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.377 6.377 3 C 0.101 3.899 4 H 0.067 0.933 5 C -0.175 4.175 6 C -0.143 4.143 7 C 0.513 3.487 8 O -0.539 6.539 9 N -0.729 5.729 10 C 0.122 3.878 11 C -0.154 4.154 12 C 0.154 3.846 13 N -0.592 5.592 14 C -0.273 4.273 15 H 0.079 0.921 16 C 0.041 3.959 17 N -0.893 5.893 18 Si 0.876 3.124 19 H -0.284 1.284 20 H -0.299 1.299 21 H -0.266 1.266 22 C 0.168 3.832 23 C -0.127 4.127 24 C -0.079 4.079 25 C -0.182 4.182 26 C 0.075 3.925 27 N -0.488 5.488 28 C 0.120 3.880 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.399 0.601 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.266 0.734 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.124 0.876 48 H 0.123 0.877 49 H 0.144 0.856 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.043 12.382 14.582 21.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.295 6.295 3 C 0.042 3.958 4 H 0.085 0.915 5 C -0.233 4.233 6 C -0.183 4.183 7 C 0.299 3.701 8 O -0.415 6.415 9 N -0.381 5.381 10 C -0.002 4.002 11 C -0.194 4.194 12 C 0.028 3.972 13 N -0.312 5.312 14 C -0.401 4.401 15 H 0.096 0.904 16 C -0.161 4.161 17 N -0.533 5.533 18 Si 0.706 3.294 19 H -0.212 1.212 20 H -0.227 1.227 21 H -0.191 1.191 22 C 0.042 3.958 23 C -0.132 4.132 24 C -0.106 4.106 25 C -0.202 4.202 26 C -0.082 4.082 27 N -0.197 5.197 28 C -0.037 4.037 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.233 0.767 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.068 0.932 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.161 0.839 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.769 11.698 14.300 20.899 hybrid contribution -0.669 0.886 -0.754 1.342 sum -10.438 12.584 13.546 21.233 Atomic orbital electron populations 1.22691 0.81077 1.02464 0.99620 1.87897 1.19761 1.26934 1.94927 1.21767 0.93605 0.85876 0.94533 0.91464 1.22310 1.02571 1.01643 0.96760 1.21862 0.99079 1.04390 0.92923 1.20497 0.84879 0.76891 0.87882 1.90679 1.23399 1.49514 1.77947 1.46124 1.09578 1.71923 1.10447 1.21385 0.98541 1.00728 0.79548 1.22517 0.95048 1.02623 0.99215 1.20784 0.87260 0.99915 0.89269 1.44084 1.17923 1.04678 1.64562 1.18730 1.27453 0.96856 0.97071 0.90376 1.25539 0.96762 0.96072 0.97684 1.69841 1.21648 1.33736 1.28052 0.86928 0.79787 0.78111 0.84578 1.21155 1.22654 1.19063 1.20298 0.95697 0.87359 0.92453 1.21964 0.95712 0.95033 1.00525 1.21383 0.99554 0.94544 0.95114 1.21959 0.96298 1.01726 1.00247 1.22562 0.92623 0.94867 0.98175 1.67690 1.39249 1.05990 1.06729 1.22780 0.91660 0.96192 0.93072 0.94755 0.93559 0.90022 0.91503 0.91610 0.92229 0.87796 0.88033 0.76693 0.91678 0.92071 0.91732 0.91342 0.91981 0.94282 0.92421 0.91317 0.93229 0.85856 0.85925 0.83892 0.82526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.82 101.05 1.09 1.47 16 2 O -0.38 -4.60 9.58 -49.64 -0.48 -5.07 16 3 C 0.10 0.98 2.27 -26.73 -0.06 0.92 16 4 H 0.07 0.69 7.60 -51.93 -0.39 0.29 16 5 C -0.18 -1.23 9.53 37.16 0.35 -0.88 16 6 C -0.14 -1.30 5.41 -27.89 -0.15 -1.45 16 7 C 0.51 6.61 7.71 -10.99 -0.08 6.53 16 8 O -0.54 -8.95 15.42 -8.85 -0.14 -9.08 16 9 N -0.73 -8.85 5.56 -60.29 -0.33 -9.18 16 10 C 0.12 1.69 5.67 -4.04 -0.02 1.67 16 11 C -0.15 -2.37 5.53 -26.73 -0.15 -2.51 16 12 C 0.15 2.75 5.71 -4.04 -0.02 2.72 16 13 N -0.59 -12.62 2.03 -174.60 -0.35 -12.98 16 14 C -0.27 -7.00 9.92 -15.06 -0.15 -7.15 16 15 H 0.08 2.22 8.06 -52.48 -0.42 1.80 16 16 C 0.04 1.11 5.31 -17.43 -0.09 1.01 16 17 N -0.89 -25.77 13.97 55.49 0.78 -25.00 16 18 Si 0.88 20.75 24.94 -169.99 -4.24 16.51 16 19 H -0.28 -6.51 6.73 56.52 0.38 -6.13 16 20 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.17 3.30 4.47 -5.20 -0.02 3.28 16 23 C -0.13 -2.28 5.02 -104.49 -0.52 -2.81 16 24 C -0.08 -1.17 7.83 -39.28 -0.31 -1.47 16 25 C -0.18 -2.40 10.11 -39.44 -0.40 -2.80 16 26 C 0.08 1.10 11.18 -17.54 -0.20 0.90 16 27 N -0.49 -8.86 10.36 -13.25 -0.14 -9.00 16 28 C 0.12 2.33 10.88 -17.55 -0.19 2.14 16 29 H 0.03 0.26 7.87 -51.93 -0.41 -0.14 16 30 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.40 7.87 -51.93 -0.41 -0.01 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.40 4.04 8.47 -40.82 -0.35 3.69 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.98 5.55 -51.93 -0.29 0.69 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.15 8.04 -51.93 -0.42 0.73 16 43 H 0.04 0.63 7.94 -51.93 -0.41 0.21 16 44 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.07 1.49 3.67 -51.93 -0.19 1.30 16 46 H 0.05 0.87 7.89 -51.93 -0.41 0.46 16 47 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 48 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 49 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 50 H 0.16 3.33 8.06 -52.49 -0.42 2.91 16 LS Contribution 406.90 15.07 6.13 6.13 Total: -1.00 -31.96 406.90 -8.05 -40.01 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -8.35 Total: 6.08 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -0.93 Total: 1.58 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.05 Total: -56.15 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.61 Total: -14.16 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.24 Total: 16.51 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.96 -8.05 -40.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230704265.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.388 kcal (2) G-P(sol) polarization free energy of solvation -31.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds