Wall clock time and date at job start Tue Mar 31 2020 19:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99933 * 2 1 4 4 H 1.08998 * 109.47176 * 330.00871 * 3 2 1 5 5 C 1.53008 * 109.46668 * 90.00331 * 3 2 1 6 6 C 1.52999 * 109.47394 * 210.00401 * 3 2 1 7 7 C 1.50696 * 109.47281 * 64.99781 * 6 3 2 8 8 O 1.21281 * 119.99744 * 0.02562 * 7 6 3 9 9 N 1.34775 * 119.99964 * 179.97438 * 7 6 3 10 10 C 1.46504 * 119.99552 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46524 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46668 * 179.97438 * 11 10 9 13 13 N 1.46507 * 109.47067 * 179.97438 * 12 11 10 14 14 C 1.36941 * 119.99553 * 90.00124 * 13 12 11 15 15 H 1.08004 * 120.00306 * 319.40907 * 14 13 12 16 16 C 1.38809 * 120.00042 * 139.41610 * 14 13 12 17 17 N 1.31620 * 120.00202 * 161.19869 * 16 14 13 18 18 Si 1.86805 * 119.99758 * 341.19610 * 16 14 13 19 19 H 1.48504 * 109.46991 * 95.35033 * 18 16 14 20 20 H 1.48499 * 109.47131 * 215.34634 * 18 16 14 21 21 H 1.48494 * 109.47215 * 335.35416 * 18 16 14 22 22 C 1.46499 * 120.00378 * 270.00505 * 13 12 11 23 23 C 1.50698 * 109.47171 * 84.84384 * 22 13 12 24 24 C 1.38669 * 120.41826 * 264.77967 * 23 22 13 25 25 C 1.38625 * 118.42271 * 179.78420 * 24 23 22 26 26 C 1.38231 * 119.15930 * 0.51613 * 25 24 23 27 27 N 1.31855 * 120.75967 * 359.72044 * 26 25 24 28 28 C 1.31880 * 121.72767 * 0.02562 * 27 26 25 29 29 H 1.09003 * 109.46746 * 299.99359 * 1 2 3 30 30 H 1.08998 * 109.47407 * 59.99673 * 1 2 3 31 31 H 1.09002 * 109.47077 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46877 * 180.02562 * 5 3 2 33 33 H 1.08998 * 109.46881 * 60.00359 * 5 3 2 34 34 H 1.09000 * 109.47242 * 299.99916 * 5 3 2 35 35 H 1.08993 * 109.47116 * 185.00380 * 6 3 2 36 36 H 1.09003 * 109.46863 * 305.00198 * 6 3 2 37 37 H 0.96995 * 119.99969 * 0.02562 * 9 7 6 38 38 H 1.09003 * 109.47402 * 300.00178 * 10 9 7 39 39 H 1.08995 * 109.47022 * 60.00793 * 10 9 7 40 40 H 1.08995 * 109.47696 * 299.99978 * 11 10 9 41 41 H 1.08998 * 109.47646 * 60.00613 * 11 10 9 42 42 H 1.09003 * 109.47383 * 299.99845 * 12 11 10 43 43 H 1.09003 * 109.47197 * 60.00212 * 12 11 10 44 44 H 0.97007 * 119.99625 * 179.97438 * 17 16 14 45 45 H 1.08992 * 109.46741 * 204.84785 * 22 13 12 46 46 H 1.09003 * 109.46663 * 324.84312 * 22 13 12 47 47 H 1.08009 * 120.79217 * 0.02562 * 24 23 22 48 48 H 1.07995 * 120.42526 * 180.21725 * 25 24 23 49 49 H 1.07996 * 119.62122 * 179.74501 * 26 25 24 50 50 H 1.07999 * 119.61806 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7713 1.4426 6 6 3.3588 1.2634 -0.7213 7 6 3.1415 0.9237 -2.1733 8 8 2.0185 0.7345 -2.5903 9 7 4.1951 0.8313 -3.0088 10 6 3.9837 0.5017 -4.4205 11 6 5.3324 0.4595 -5.1417 12 6 5.1117 0.1146 -6.6160 13 7 6.4030 0.0747 -7.3068 14 6 7.1072 -1.0978 -7.3748 15 1 7.1556 -1.7493 -6.5147 16 6 7.7589 -1.4489 -8.5490 17 7 8.7180 -2.3500 -8.5252 18 14 7.2746 -0.6426 -10.1630 19 1 8.1761 0.5063 -10.4324 20 1 7.3904 -1.6316 -11.2647 21 1 5.8725 -0.1615 -10.0748 22 6 6.9410 1.2892 -7.9248 23 6 7.6800 2.0953 -6.8880 24 6 7.0425 3.1264 -6.2147 25 6 7.7602 3.8381 -5.2660 26 6 9.0814 3.5058 -5.0321 27 7 9.6568 2.5219 -5.6950 28 6 9.0033 1.8204 -6.6006 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.6606 2.7672 1.4427 33 1 2.8830 1.0773 1.9563 34 1 1.2569 1.8013 1.9565 35 1 3.8426 2.2370 -0.6443 36 1 3.9931 0.5052 -0.2619 37 1 5.0932 0.9830 -2.6753 38 1 3.5000 -0.4721 -4.4978 39 1 3.3494 1.2599 -4.8796 40 1 5.8164 1.4330 -5.0645 41 1 5.9664 -0.2990 -4.6826 42 1 4.6279 -0.8592 -6.6929 43 1 4.4775 0.8727 -7.0755 44 1 9.1731 -2.5956 -9.3459 45 1 7.6251 1.0156 -8.7279 46 1 6.1224 1.8832 -8.3313 47 1 6.0100 3.3668 -6.4217 48 1 7.2945 4.6452 -4.7201 49 1 9.6487 4.0580 -4.2976 50 1 9.5084 1.0219 -7.1238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230704265.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:02 Heat of formation + Delta-G solvation = -56.175121 kcal Electronic energy + Delta-G solvation = -29103.693271 eV Core-core repulsion = 25130.636695 eV Total energy + Delta-G solvation = -3973.056576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.02568 -40.81431 -38.89723 -38.18239 -36.20194 -34.14792 -33.90027 -33.41514 -32.72038 -31.57523 -29.14646 -27.62671 -27.51096 -26.79175 -24.30727 -24.03257 -22.86227 -22.43740 -22.12610 -21.08780 -18.88986 -18.06606 -17.90322 -17.77764 -17.52893 -17.11718 -16.87361 -16.56918 -16.09441 -15.96398 -15.83862 -15.51711 -15.22487 -14.85615 -14.65186 -14.47785 -14.29871 -14.27162 -13.83820 -13.77465 -13.61411 -13.42003 -13.21691 -12.99237 -12.91931 -12.74405 -12.63636 -12.50834 -12.32881 -12.29345 -11.90356 -11.67116 -11.64718 -11.62862 -10.88830 -10.66991 -10.51391 -10.49119 -10.27280 -10.02683 -9.77617 -8.75622 -8.19237 -5.64569 0.33185 0.49258 1.31457 1.43013 1.52967 1.73138 2.26419 2.41193 2.89952 2.91848 3.16272 3.43739 3.68401 3.77563 3.88323 4.01348 4.08468 4.11526 4.20763 4.21774 4.23282 4.29808 4.42210 4.47546 4.48478 4.57794 4.59574 4.61209 4.66830 4.74353 4.76647 4.83408 4.85172 4.91175 4.92372 4.95488 5.00639 5.06702 5.27377 5.30887 5.33449 5.44023 5.52356 5.53067 5.92081 5.98257 6.20348 6.33530 6.61782 6.97628 7.18840 7.32414 7.59724 8.01920 8.99628 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.002768 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.698012 B =10111.817821 C =11552.377354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.406 6.406 3 C 0.093 3.907 4 H 0.058 0.942 5 C -0.168 4.168 6 C -0.136 4.136 7 C 0.508 3.492 8 O -0.580 6.580 9 N -0.723 5.723 10 C 0.133 3.867 11 C -0.131 4.131 12 C 0.148 3.852 13 N -0.603 5.603 14 C -0.252 4.252 15 H 0.035 0.965 16 C -0.014 4.014 17 N -0.948 5.948 18 Si 0.940 3.060 19 H -0.275 1.275 20 H -0.312 1.312 21 H -0.248 1.248 22 C 0.167 3.833 23 C -0.139 4.139 24 C -0.071 4.071 25 C -0.161 4.161 26 C 0.074 3.926 27 N -0.517 5.517 28 C 0.091 3.909 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.141 0.859 36 H 0.111 0.889 37 H 0.411 0.589 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.039 0.961 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.263 0.737 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.154 0.846 48 H 0.171 0.829 49 H 0.179 0.821 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.629 16.688 16.466 26.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.325 6.325 3 C 0.035 3.965 4 H 0.076 0.924 5 C -0.225 4.225 6 C -0.176 4.176 7 C 0.296 3.704 8 O -0.460 6.460 9 N -0.375 5.375 10 C 0.008 3.992 11 C -0.171 4.171 12 C 0.023 3.977 13 N -0.324 5.324 14 C -0.382 4.382 15 H 0.052 0.948 16 C -0.211 4.211 17 N -0.591 5.591 18 Si 0.768 3.232 19 H -0.202 1.202 20 H -0.241 1.241 21 H -0.171 1.171 22 C 0.041 3.959 23 C -0.144 4.144 24 C -0.097 4.097 25 C -0.180 4.180 26 C -0.084 4.084 27 N -0.226 5.226 28 C -0.065 4.065 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.158 0.842 36 H 0.130 0.870 37 H 0.247 0.753 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.099 0.901 47 H 0.172 0.828 48 H 0.189 0.811 49 H 0.196 0.804 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.360 16.049 16.208 25.482 hybrid contribution -0.169 -0.343 -1.166 1.227 sum -11.530 15.707 15.042 24.615 Atomic orbital electron populations 1.22750 0.80361 1.02902 0.99967 1.87849 1.20787 1.28709 1.95168 1.21978 0.93519 0.84783 0.96240 0.92395 1.22250 1.02931 1.02661 0.94651 1.21956 0.99296 1.06580 0.89735 1.21210 0.84126 0.75799 0.89314 1.90666 1.25054 1.51377 1.78924 1.46041 1.10301 1.71464 1.09658 1.21127 0.97228 1.00109 0.80720 1.22201 0.95408 1.02040 0.97457 1.20937 0.85938 1.00244 0.90584 1.44120 1.19004 1.04091 1.65177 1.18486 1.26517 0.97882 0.95315 0.94778 1.26126 0.96920 0.97148 1.00928 1.69981 1.23832 1.36775 1.28537 0.85898 0.80334 0.77018 0.79961 1.20232 1.24067 1.17130 1.20281 0.96280 0.86995 0.92318 1.21693 0.95075 0.96721 1.00912 1.21704 1.00813 0.92945 0.94277 1.22425 0.95251 1.01533 0.98790 1.23266 0.93946 0.93513 0.97629 1.67613 1.40296 1.07408 1.07260 1.22331 0.92733 0.96747 0.94707 0.92623 0.94912 0.89670 0.89364 0.91571 0.92045 0.84162 0.87048 0.75289 0.93598 0.91202 0.90579 0.94173 0.93621 0.91159 0.92831 0.93963 0.90118 0.82808 0.81109 0.80394 0.86651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 10.82 113.37 1.23 1.92 16 2 O -0.41 -9.54 9.58 -135.20 -1.30 -10.83 16 3 C 0.09 1.61 2.27 30.60 0.07 1.68 16 4 H 0.06 1.09 7.60 -2.39 -0.02 1.08 16 5 C -0.17 -1.85 9.53 71.98 0.69 -1.16 16 6 C -0.14 -2.08 5.41 29.85 0.16 -1.92 16 7 C 0.51 12.13 7.71 87.66 0.68 12.81 16 8 O -0.58 -18.84 15.42 10.74 0.17 -18.68 16 9 N -0.72 -15.93 5.56 -463.06 -2.57 -18.51 16 10 C 0.13 3.47 5.67 86.38 0.49 3.96 16 11 C -0.13 -3.86 5.53 30.60 0.17 -3.69 16 12 C 0.15 5.12 5.71 86.38 0.49 5.61 16 13 N -0.60 -25.70 2.03 -706.32 -1.43 -27.13 16 14 C -0.25 -13.58 9.92 84.03 0.83 -12.75 16 15 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 16 C -0.01 -0.81 5.31 84.86 0.45 -0.36 16 17 N -0.95 -58.24 13.97 21.65 0.30 -57.94 16 18 Si 0.94 44.25 24.94 68.60 1.71 45.96 16 19 H -0.28 -12.42 6.73 99.48 0.67 -11.75 16 20 H -0.31 -15.20 7.11 99.48 0.71 -14.50 16 21 H -0.25 -10.78 7.11 99.48 0.71 -10.07 16 22 C 0.17 6.34 4.47 85.63 0.38 6.73 16 23 C -0.14 -4.79 5.02 -19.78 -0.10 -4.89 16 24 C -0.07 -1.76 7.83 22.47 0.18 -1.59 16 25 C -0.16 -3.32 10.11 22.36 0.23 -3.10 16 26 C 0.07 1.89 11.18 84.69 0.95 2.84 16 27 N -0.52 -18.37 10.36 -195.85 -2.03 -20.40 16 28 C 0.09 3.61 10.88 84.67 0.92 4.53 16 29 H 0.06 0.78 7.87 -2.39 -0.02 0.76 16 30 H 0.03 0.69 8.08 -2.39 -0.02 0.67 16 31 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.66 7.87 -2.39 -0.02 0.64 16 35 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.41 7.13 8.47 -92.71 -0.79 6.35 16 38 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.08 2.07 5.55 -2.39 -0.01 2.05 16 41 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 1.71 8.04 -2.39 -0.02 1.69 16 43 H 0.07 2.02 7.94 -2.39 -0.02 2.00 16 44 H 0.26 15.38 8.31 -92.70 -0.77 14.61 16 45 H 0.04 1.84 3.67 -2.39 -0.01 1.83 16 46 H 0.08 2.55 7.89 -2.39 -0.02 2.53 16 47 H 0.15 2.94 8.06 -2.91 -0.02 2.92 16 48 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 49 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 50 H 0.12 5.38 8.06 -2.91 -0.02 5.36 16 Total: -1.00 -76.40 406.90 2.76 -73.64 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.10 Total: 23.25 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 7.81 Total: 10.63 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -5.73 Total: -123.98 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -1.13 Total: -29.51 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.71 Total: 45.96 kcal Total: -76.40 2.76 -73.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230704265.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.464 kcal (2) G-P(sol) polarization free energy of solvation -76.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds