Wall clock time and date at job start Tue Mar 31 2020 18:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47207 * 2 1 4 4 C 1.50711 * 109.46838 * 240.00534 * 2 1 3 5 5 O 1.21277 * 120.00204 * 253.85980 * 4 2 1 6 6 N 1.34779 * 119.99674 * 73.85809 * 4 2 1 7 7 C 1.46501 * 120.00301 * 3.70766 * 6 4 2 8 8 C 1.46495 * 119.99546 * 183.70022 * 6 4 2 9 9 C 1.53000 * 109.47037 * 90.00455 * 8 6 4 10 10 O 1.42900 * 109.47379 * 64.99753 * 9 8 6 11 11 C 1.42897 * 114.00049 * 179.97438 * 10 9 8 12 12 C 1.53009 * 109.46900 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.47025 * 65.00194 * 12 11 10 14 14 C 1.46495 * 120.00039 * 269.99897 * 13 12 11 15 15 C 1.36934 * 119.99703 * 90.00104 * 13 12 11 16 16 H 1.08000 * 120.00253 * 22.61376 * 15 13 12 17 17 C 1.38815 * 119.99517 * 202.61295 * 15 13 12 18 18 N 1.31613 * 120.00430 * 10.33123 * 17 15 13 19 19 Si 1.86807 * 119.99630 * 190.33147 * 17 15 13 20 20 H 1.48495 * 109.47187 * 89.99775 * 19 17 15 21 21 H 1.48504 * 109.46801 * 210.00168 * 19 17 15 22 22 H 1.48504 * 109.46983 * 329.99537 * 19 17 15 23 23 C 1.50698 * 109.47636 * 120.00578 * 2 1 3 24 24 C 1.38666 * 120.41953 * 239.99627 * 23 2 1 25 25 C 1.38632 * 118.42261 * 180.02562 * 24 23 2 26 26 C 1.38231 * 119.15913 * 0.02562 * 25 24 23 27 27 N 1.31854 * 120.76413 * 0.02562 * 26 25 24 28 28 C 1.31891 * 121.72542 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47968 * 56.77984 * 1 2 3 30 30 H 1.09008 * 109.47334 * 176.78946 * 1 2 3 31 31 H 1.09005 * 109.46774 * 296.77655 * 1 2 3 32 32 H 1.08995 * 109.47163 * 85.45344 * 7 6 4 33 33 H 1.08996 * 109.46782 * 205.45945 * 7 6 4 34 34 H 1.09009 * 109.46699 * 325.45490 * 7 6 4 35 35 H 1.09010 * 109.47084 * 210.00273 * 8 6 4 36 36 H 1.08995 * 109.47581 * 330.00366 * 8 6 4 37 37 H 1.09003 * 109.47385 * 184.99795 * 9 8 6 38 38 H 1.09001 * 109.46956 * 304.99721 * 9 8 6 39 39 H 1.08994 * 109.47216 * 299.99898 * 11 10 9 40 40 H 1.08995 * 109.47184 * 60.00371 * 11 10 9 41 41 H 1.08997 * 109.46975 * 185.00335 * 12 11 10 42 42 H 1.08996 * 109.46730 * 305.00097 * 12 11 10 43 43 H 1.09004 * 109.46976 * 93.64456 * 14 13 12 44 44 H 1.08996 * 109.47187 * 213.64536 * 14 13 12 45 45 H 1.09001 * 109.47277 * 333.64594 * 14 13 12 46 46 H 0.96996 * 120.00381 * 180.02562 * 18 17 15 47 47 H 1.07998 * 120.79088 * 0.29693 * 24 23 2 48 48 H 1.07999 * 120.41866 * 180.02562 * 25 24 23 49 49 H 1.07999 * 119.61428 * 179.97438 * 26 25 24 50 50 H 1.07998 * 119.61578 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.5096 -1.8213 -1.1372 6 7 1.9509 -0.1110 -2.4351 7 6 1.4496 1.2618 -2.5378 8 6 2.3639 -0.8322 -3.6414 9 6 1.1648 -1.5856 -4.2208 10 8 0.1797 -0.6479 -4.6595 11 6 -0.9876 -1.2513 -5.2210 12 6 -1.9683 -0.1593 -5.6532 13 7 -1.3772 0.6260 -6.7396 14 6 -0.5732 1.8116 -6.4328 15 6 -1.5761 0.2517 -8.0416 16 1 -2.4252 -0.3624 -8.3033 17 6 -0.6866 0.6617 -9.0252 18 7 0.4501 1.2329 -8.6879 19 14 -1.1029 0.4025 -10.8278 20 1 -1.8328 1.5887 -11.3428 21 1 0.1499 0.2169 -11.6034 22 1 -1.9565 -0.8043 -10.9701 23 6 2.0324 -0.7105 1.2303 24 6 2.8302 -0.0451 2.1488 25 6 3.2699 -0.7387 3.2657 26 6 2.9013 -2.0614 3.4253 27 7 2.1419 -2.6626 2.5306 28 6 1.7056 -2.0340 1.4564 29 1 -0.3635 0.5630 -0.8596 30 1 -0.3634 -1.0261 -0.0576 31 1 -0.3633 0.4630 0.9175 32 1 2.2684 1.9612 -2.3694 33 1 1.0327 1.4228 -3.5319 34 1 0.6745 1.4226 -1.7883 35 1 2.7378 -0.1221 -4.3792 36 1 3.1514 -1.5420 -3.3887 37 1 1.4906 -2.1923 -5.0657 38 1 0.7362 -2.2309 -3.4540 39 1 -0.7061 -1.8507 -6.0867 40 1 -1.4610 -1.8898 -4.4753 41 1 -2.8942 -0.6187 -5.9991 42 1 -2.1809 0.4938 -4.8068 43 1 0.4796 1.5335 -6.3822 44 1 -0.7145 2.5585 -7.2140 45 1 -0.8863 2.2249 -5.4741 46 1 1.0716 1.5197 -9.3753 47 1 3.0991 0.9902 1.9998 48 1 3.8924 -0.2518 4.0017 49 1 3.2400 -2.6088 4.2924 50 1 1.0857 -2.5597 0.7453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264111375.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:55 Heat of formation + Delta-G solvation = -14.447732 kcal Electronic energy + Delta-G solvation = -29657.756935 eV Core-core repulsion = 25686.509795 eV Total energy + Delta-G solvation = -3971.247140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.88796 -39.59821 -37.52738 -35.69616 -35.06906 -34.74524 -32.35375 -31.54735 -30.44892 -29.41360 -27.96586 -26.59864 -25.73965 -25.01720 -23.73760 -23.41959 -22.94115 -21.63948 -20.31772 -19.10344 -17.47660 -17.26923 -16.77900 -16.49010 -16.17622 -15.88516 -15.58614 -15.19690 -14.93799 -14.56228 -14.30008 -13.98993 -13.92632 -13.59308 -13.37663 -13.30284 -13.25597 -13.00897 -12.68128 -12.51580 -12.33207 -12.18089 -11.91772 -11.78354 -11.55407 -11.36560 -11.30533 -10.95101 -10.83041 -10.75611 -10.49725 -10.11005 -10.08232 -9.91656 -9.81705 -9.66509 -9.60012 -9.15192 -8.92674 -8.60946 -8.49403 -6.68575 -5.67553 -3.13031 0.91027 1.09295 2.54835 2.98525 3.38878 3.45231 3.46202 3.66171 4.14588 4.26463 4.36314 4.46091 4.53174 4.63600 4.72013 4.80402 4.89797 5.01636 5.13800 5.28447 5.31577 5.37006 5.44500 5.45672 5.54260 5.56040 5.59965 5.62111 5.71568 5.76789 5.85954 5.87218 5.96052 6.01228 6.08794 6.13422 6.20031 6.26771 6.50379 6.54026 6.57403 6.77948 6.90756 7.37708 7.49716 7.80747 7.82339 7.87106 7.93677 8.11877 8.44919 9.29811 9.93099 10.43135 11.36883 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028806 B = 0.002260 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.783149 B =12385.820930 C =12413.985123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 H 0.103 0.897 4 C 0.517 3.483 5 O -0.540 6.540 6 N -0.599 5.599 7 C 0.070 3.930 8 C 0.120 3.880 9 C 0.049 3.951 10 O -0.366 6.366 11 C 0.044 3.956 12 C 0.154 3.846 13 N -0.597 5.597 14 C 0.176 3.824 15 C -0.254 4.254 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.905 5.905 19 Si 0.902 3.098 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.281 1.281 23 C -0.121 4.121 24 C -0.070 4.070 25 C -0.179 4.179 26 C 0.094 3.906 27 N -0.488 5.488 28 C 0.139 3.861 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.040 0.960 39 H 0.046 0.954 40 H 0.022 0.978 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.030 0.970 44 H 0.038 0.962 45 H -0.009 1.009 46 H 0.250 0.750 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.153 0.847 50 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.840 0.133 22.254 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 H 0.121 0.879 4 C 0.304 3.696 5 O -0.418 6.418 6 N -0.331 5.331 7 C -0.073 4.073 8 C -0.003 4.003 9 C -0.029 4.029 10 O -0.285 6.285 11 C -0.035 4.035 12 C 0.026 3.974 13 N -0.319 5.319 14 C 0.032 3.968 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.550 5.550 19 Si 0.733 3.267 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.123 4.123 24 C -0.096 4.096 25 C -0.199 4.199 26 C -0.062 4.062 27 N -0.196 5.196 28 C -0.018 4.018 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.010 0.990 46 H 0.061 0.939 47 H 0.151 0.849 48 H 0.151 0.849 49 H 0.170 0.830 50 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.022 -1.037 22.306 22.689 hybrid contribution 0.239 0.462 -1.326 1.424 sum 4.261 -0.576 20.980 21.416 Atomic orbital electron populations 1.21885 0.91362 1.03555 1.03392 1.20194 0.98149 1.00051 0.90339 0.87922 1.20397 0.78526 0.86302 0.84350 1.90702 1.45189 1.19910 1.85963 1.47710 1.63855 1.15459 1.06111 1.22077 0.98804 0.81071 1.05328 1.21572 0.95942 0.97098 0.85653 1.22752 0.90378 0.92391 0.97402 1.87920 1.28359 1.32010 1.80212 1.23450 0.87124 0.97768 0.95171 1.20878 0.93424 0.92013 0.91089 1.43875 1.59932 1.26920 1.01193 1.20686 0.94667 0.87694 0.93792 1.19214 1.05587 1.30203 0.83381 0.91593 1.25022 0.95293 1.01187 0.98162 1.70075 1.08555 1.45086 1.31295 0.86291 0.77079 0.77879 0.85477 1.21580 1.21820 1.20628 1.20390 0.99664 0.96084 0.96202 1.21467 0.94722 1.00118 0.93273 1.22073 1.02345 0.96363 0.99071 1.22786 0.93733 0.92303 0.97413 1.67752 1.10527 1.38571 1.02767 1.22602 0.95405 0.90836 0.92925 0.90410 0.91677 0.91170 0.92974 0.88663 0.90999 0.89183 0.88973 0.92940 0.94202 0.93530 0.96004 0.92524 0.93923 0.95129 0.94290 0.99019 0.93942 0.84930 0.84873 0.82974 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.69 37.16 0.32 -0.90 16 2 C -0.07 -0.63 2.08 -92.92 -0.19 -0.82 16 3 H 0.10 0.77 7.26 -51.93 -0.38 0.39 16 4 C 0.52 6.69 6.85 -10.98 -0.08 6.61 16 5 O -0.54 -8.76 14.26 5.56 0.08 -8.68 16 6 N -0.60 -7.61 2.84 -181.57 -0.52 -8.12 16 7 C 0.07 0.75 9.64 59.85 0.58 1.32 16 8 C 0.12 1.69 5.82 -4.04 -0.02 1.67 16 9 C 0.05 0.78 6.28 37.16 0.23 1.02 16 10 O -0.37 -6.76 8.81 -35.23 -0.31 -7.07 16 11 C 0.04 0.84 6.28 37.16 0.23 1.07 16 12 C 0.15 3.11 6.12 -4.04 -0.02 3.08 16 13 N -0.60 -14.81 2.89 -181.12 -0.52 -15.34 16 14 C 0.18 4.29 8.60 59.84 0.51 4.81 16 15 C -0.25 -6.91 9.67 -15.06 -0.15 -7.06 16 16 H 0.07 1.75 7.84 -52.49 -0.41 1.34 16 17 C 0.00 0.04 5.15 -17.43 -0.09 -0.05 16 18 N -0.90 -26.13 10.55 55.49 0.59 -25.54 16 19 Si 0.90 21.79 29.57 -169.99 -5.03 16.76 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C -0.12 -1.28 4.54 -104.48 -0.47 -1.75 16 24 C -0.07 -0.61 9.81 -39.28 -0.39 -1.00 16 25 C -0.18 -1.47 10.11 -39.44 -0.40 -1.86 16 26 C 0.09 0.92 11.18 -17.54 -0.20 0.72 16 27 N -0.49 -6.16 10.36 -13.25 -0.14 -6.29 16 28 C 0.14 1.72 9.07 -17.55 -0.16 1.57 16 29 H 0.08 0.65 5.82 -51.93 -0.30 0.34 16 30 H 0.06 0.61 7.53 -51.92 -0.39 0.22 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 1.26 7.21 -51.93 -0.37 0.89 16 34 H 0.07 0.63 4.54 -51.92 -0.24 0.39 16 35 H 0.09 1.29 8.07 -51.92 -0.42 0.87 16 36 H 0.09 1.28 7.37 -51.93 -0.38 0.90 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 42 H 0.04 0.79 7.87 -51.93 -0.41 0.38 16 43 H 0.03 0.80 7.45 -51.93 -0.39 0.42 16 44 H 0.04 1.03 7.14 -51.93 -0.37 0.66 16 45 H -0.01 -0.19 7.85 -51.93 -0.41 -0.59 16 46 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.13 0.82 8.00 -52.49 -0.42 0.40 16 48 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 49 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 50 H 0.15 1.94 7.23 -52.49 -0.38 1.57 16 LS Contribution 402.99 15.07 6.07 6.07 Total: -1.00 -33.35 402.99 -8.26 -41.61 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -8.20 Total: -1.82 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -0.28 Total: 8.42 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.59 Total: -55.30 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.23 Total: -15.75 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.35 -8.26 -41.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264111375.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.163 kcal (2) G-P(sol) polarization free energy of solvation -33.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds