Wall clock time and date at job start Tue Mar 31 2020 18:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47207 * 2 1 4 4 C 1.50711 * 109.46838 * 240.00534 * 2 1 3 5 5 O 1.21277 * 120.00204 * 253.85980 * 4 2 1 6 6 N 1.34779 * 119.99674 * 73.85809 * 4 2 1 7 7 C 1.46501 * 120.00301 * 3.70766 * 6 4 2 8 8 C 1.46495 * 119.99546 * 183.70022 * 6 4 2 9 9 C 1.53000 * 109.47037 * 90.00455 * 8 6 4 10 10 O 1.42900 * 109.47379 * 64.99753 * 9 8 6 11 11 C 1.42897 * 114.00049 * 179.97438 * 10 9 8 12 12 C 1.53009 * 109.46900 * 179.97438 * 11 10 9 13 13 N 1.46502 * 109.47025 * 65.00194 * 12 11 10 14 14 C 1.46495 * 120.00039 * 269.99897 * 13 12 11 15 15 C 1.36934 * 119.99703 * 90.00104 * 13 12 11 16 16 H 1.08000 * 120.00253 * 22.61376 * 15 13 12 17 17 C 1.38815 * 119.99517 * 202.61295 * 15 13 12 18 18 N 1.31613 * 120.00430 * 10.33123 * 17 15 13 19 19 Si 1.86807 * 119.99630 * 190.33147 * 17 15 13 20 20 H 1.48495 * 109.47187 * 89.99775 * 19 17 15 21 21 H 1.48504 * 109.46801 * 210.00168 * 19 17 15 22 22 H 1.48504 * 109.46983 * 329.99537 * 19 17 15 23 23 C 1.50698 * 109.47636 * 120.00578 * 2 1 3 24 24 C 1.38666 * 120.41953 * 239.99627 * 23 2 1 25 25 C 1.38632 * 118.42261 * 180.02562 * 24 23 2 26 26 C 1.38231 * 119.15913 * 0.02562 * 25 24 23 27 27 N 1.31854 * 120.76413 * 0.02562 * 26 25 24 28 28 C 1.31891 * 121.72542 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47968 * 56.77984 * 1 2 3 30 30 H 1.09008 * 109.47334 * 176.78946 * 1 2 3 31 31 H 1.09005 * 109.46774 * 296.77655 * 1 2 3 32 32 H 1.08995 * 109.47163 * 85.45344 * 7 6 4 33 33 H 1.08996 * 109.46782 * 205.45945 * 7 6 4 34 34 H 1.09009 * 109.46699 * 325.45490 * 7 6 4 35 35 H 1.09010 * 109.47084 * 210.00273 * 8 6 4 36 36 H 1.08995 * 109.47581 * 330.00366 * 8 6 4 37 37 H 1.09003 * 109.47385 * 184.99795 * 9 8 6 38 38 H 1.09001 * 109.46956 * 304.99721 * 9 8 6 39 39 H 1.08994 * 109.47216 * 299.99898 * 11 10 9 40 40 H 1.08995 * 109.47184 * 60.00371 * 11 10 9 41 41 H 1.08997 * 109.46975 * 185.00335 * 12 11 10 42 42 H 1.08996 * 109.46730 * 305.00097 * 12 11 10 43 43 H 1.09004 * 109.46976 * 93.64456 * 14 13 12 44 44 H 1.08996 * 109.47187 * 213.64536 * 14 13 12 45 45 H 1.09001 * 109.47277 * 333.64594 * 14 13 12 46 46 H 0.96996 * 120.00381 * 180.02562 * 18 17 15 47 47 H 1.07998 * 120.79088 * 0.29693 * 24 23 2 48 48 H 1.07999 * 120.41866 * 180.02562 * 25 24 23 49 49 H 1.07999 * 119.61428 * 179.97438 * 26 25 24 50 50 H 1.07998 * 119.61578 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.5096 -1.8213 -1.1372 6 7 1.9509 -0.1110 -2.4351 7 6 1.4496 1.2618 -2.5378 8 6 2.3639 -0.8322 -3.6414 9 6 1.1648 -1.5856 -4.2208 10 8 0.1797 -0.6479 -4.6595 11 6 -0.9876 -1.2513 -5.2210 12 6 -1.9683 -0.1593 -5.6532 13 7 -1.3772 0.6260 -6.7396 14 6 -0.5732 1.8116 -6.4328 15 6 -1.5761 0.2517 -8.0416 16 1 -2.4252 -0.3624 -8.3033 17 6 -0.6866 0.6617 -9.0252 18 7 0.4501 1.2329 -8.6879 19 14 -1.1029 0.4025 -10.8278 20 1 -1.8328 1.5887 -11.3428 21 1 0.1499 0.2169 -11.6034 22 1 -1.9565 -0.8043 -10.9701 23 6 2.0324 -0.7105 1.2303 24 6 2.8302 -0.0451 2.1488 25 6 3.2699 -0.7387 3.2657 26 6 2.9013 -2.0614 3.4253 27 7 2.1419 -2.6626 2.5306 28 6 1.7056 -2.0340 1.4564 29 1 -0.3635 0.5630 -0.8596 30 1 -0.3634 -1.0261 -0.0576 31 1 -0.3633 0.4630 0.9175 32 1 2.2684 1.9612 -2.3694 33 1 1.0327 1.4228 -3.5319 34 1 0.6745 1.4226 -1.7883 35 1 2.7378 -0.1221 -4.3792 36 1 3.1514 -1.5420 -3.3887 37 1 1.4906 -2.1923 -5.0657 38 1 0.7362 -2.2309 -3.4540 39 1 -0.7061 -1.8507 -6.0867 40 1 -1.4610 -1.8898 -4.4753 41 1 -2.8942 -0.6187 -5.9991 42 1 -2.1809 0.4938 -4.8068 43 1 0.4796 1.5335 -6.3822 44 1 -0.7145 2.5585 -7.2140 45 1 -0.8863 2.2249 -5.4741 46 1 1.0716 1.5197 -9.3753 47 1 3.0991 0.9902 1.9998 48 1 3.8924 -0.2518 4.0017 49 1 3.2400 -2.6088 4.2924 50 1 1.0857 -2.5597 0.7453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264111375.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:54 Heat of formation + Delta-G solvation = -34.867632 kcal Electronic energy + Delta-G solvation = -29658.642408 eV Core-core repulsion = 25686.509795 eV Total energy + Delta-G solvation = -3972.132614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.73962 -40.50290 -38.97630 -37.23637 -36.38943 -35.65649 -33.44670 -33.04831 -31.58751 -30.43797 -29.49851 -27.78052 -27.54058 -25.83454 -24.82326 -24.48569 -24.35698 -22.57715 -22.09703 -20.05878 -18.77238 -18.34138 -18.00289 -17.55199 -17.35512 -17.05822 -16.76215 -16.60571 -16.36110 -15.69971 -15.33916 -15.26654 -15.13435 -14.88164 -14.70532 -14.36910 -14.17373 -13.97964 -13.88641 -13.66757 -13.41081 -13.24019 -13.14783 -12.98191 -12.84160 -12.72210 -12.61016 -12.46919 -12.40474 -12.24091 -12.13994 -11.98257 -11.77620 -11.67260 -10.91494 -10.60770 -10.58452 -10.37389 -10.35950 -9.89406 -9.65113 -8.70143 -7.76448 -5.23367 0.18000 0.39131 1.47472 1.48137 1.56283 1.56703 2.01843 2.53545 2.89449 2.90641 3.36562 3.42037 3.54287 3.72964 3.79289 3.94754 4.06348 4.10904 4.11882 4.16244 4.22107 4.33995 4.39738 4.41112 4.50781 4.54937 4.60279 4.65838 4.67495 4.72865 4.77683 4.82073 4.88672 4.90640 4.98015 5.01897 5.07424 5.19574 5.21365 5.26616 5.38092 5.45702 5.49386 5.69291 5.81349 5.90640 6.35750 6.39407 6.48317 7.06658 7.13206 7.22693 7.95839 8.39615 9.26286 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.028806 B = 0.002260 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.783149 B =12385.820930 C =12413.985123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.056 4.056 3 H 0.133 0.867 4 C 0.513 3.487 5 O -0.579 6.579 6 N -0.600 5.600 7 C 0.070 3.930 8 C 0.125 3.875 9 C 0.053 3.947 10 O -0.376 6.376 11 C 0.052 3.948 12 C 0.151 3.849 13 N -0.613 5.613 14 C 0.195 3.805 15 C -0.260 4.260 16 H 0.070 0.930 17 C -0.054 4.054 18 N -0.934 5.934 19 Si 0.964 3.036 20 H -0.286 1.286 21 H -0.298 1.298 22 H -0.271 1.271 23 C -0.130 4.130 24 C -0.071 4.071 25 C -0.171 4.171 26 C 0.080 3.920 27 N -0.523 5.523 28 C 0.114 3.886 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.043 0.957 38 H 0.041 0.959 39 H 0.017 0.983 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.004 0.996 44 H 0.009 0.991 45 H 0.024 0.976 46 H 0.245 0.755 47 H 0.166 0.834 48 H 0.169 0.831 49 H 0.176 0.824 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.541 1.537 24.186 24.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 H 0.151 0.849 4 C 0.302 3.698 5 O -0.459 6.459 6 N -0.331 5.331 7 C -0.072 4.072 8 C 0.002 3.998 9 C -0.025 4.025 10 O -0.295 6.295 11 C -0.027 4.027 12 C 0.024 3.976 13 N -0.336 5.336 14 C 0.050 3.950 15 C -0.390 4.390 16 H 0.088 0.912 17 C -0.249 4.249 18 N -0.581 5.581 19 Si 0.793 3.207 20 H -0.213 1.213 21 H -0.225 1.225 22 H -0.195 1.195 23 C -0.132 4.132 24 C -0.096 4.096 25 C -0.190 4.190 26 C -0.077 4.077 27 N -0.233 5.233 28 C -0.042 4.042 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.036 0.964 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.023 0.977 44 H 0.028 0.972 45 H 0.042 0.958 46 H 0.054 0.946 47 H 0.183 0.817 48 H 0.186 0.814 49 H 0.193 0.807 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.683 0.368 24.256 24.537 hybrid contribution 0.332 -0.011 -1.808 1.839 sum 4.015 0.357 22.448 22.807 Atomic orbital electron populations 1.21867 0.90523 1.02822 1.04539 1.20225 0.98678 1.00828 0.88033 0.84884 1.21035 0.77684 0.85916 0.85137 1.90688 1.46945 1.21746 1.86556 1.47795 1.63632 1.16143 1.05565 1.22180 1.00231 0.80191 1.04570 1.21393 0.95029 0.97020 0.86359 1.22781 0.90448 0.92257 0.97010 1.87903 1.28683 1.32829 1.80129 1.23226 0.87248 0.97202 0.95028 1.21064 0.93642 0.92353 0.90506 1.44105 1.60016 1.27770 1.01692 1.20373 0.93360 0.87068 0.94193 1.19542 1.05362 1.29340 0.84754 0.91249 1.25745 0.95457 1.01784 1.01910 1.70244 1.09410 1.46469 1.31943 0.85318 0.76506 0.78005 0.80905 1.21344 1.22498 1.19541 1.20492 1.00249 0.95498 0.97005 1.21900 0.93499 1.01568 0.92662 1.22476 1.01522 0.95615 0.99377 1.23293 0.93288 0.93559 0.97541 1.67673 1.12002 1.39927 1.03654 1.22451 0.96569 0.91988 0.93192 0.89993 0.93343 0.89209 0.90775 0.91250 0.88644 0.89645 0.89083 0.93911 0.94114 0.96444 0.92987 0.91453 0.91704 0.97723 0.97243 0.95755 0.94608 0.81678 0.81368 0.80712 0.84931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.69 71.98 0.63 -1.47 16 2 C -0.06 -0.96 2.08 -12.28 -0.03 -0.98 16 3 H 0.13 1.45 7.26 -2.39 -0.02 1.43 16 4 C 0.51 12.87 6.85 87.66 0.60 13.47 16 5 O -0.58 -19.12 14.26 -3.02 -0.04 -19.16 16 6 N -0.60 -14.68 2.84 -846.75 -2.40 -17.08 16 7 C 0.07 1.35 9.64 127.77 1.23 2.59 16 8 C 0.13 3.57 5.82 86.38 0.50 4.08 16 9 C 0.05 1.72 6.28 71.98 0.45 2.17 16 10 O -0.38 -13.79 8.81 -148.98 -1.31 -15.11 16 11 C 0.05 1.93 6.28 71.99 0.45 2.38 16 12 C 0.15 5.84 6.12 86.38 0.53 6.37 16 13 N -0.61 -30.15 2.89 -726.94 -2.10 -32.25 16 14 C 0.19 9.49 8.60 127.77 1.10 10.59 16 15 C -0.26 -14.08 9.67 84.03 0.81 -13.27 16 16 H 0.07 3.64 7.84 -2.91 -0.02 3.62 16 17 C -0.05 -3.01 5.15 84.86 0.44 -2.58 16 18 N -0.93 -55.00 10.55 21.65 0.23 -54.77 16 19 Si 0.96 45.12 29.57 68.60 2.03 47.15 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 23 C -0.13 -2.56 4.54 -19.78 -0.09 -2.65 16 24 C -0.07 -1.01 9.81 22.47 0.22 -0.79 16 25 C -0.17 -2.28 10.11 22.36 0.23 -2.05 16 26 C 0.08 1.44 11.18 84.69 0.95 2.38 16 27 N -0.52 -13.34 10.36 -195.84 -2.03 -15.37 16 28 C 0.11 2.89 9.07 84.67 0.77 3.66 16 29 H 0.08 1.14 5.82 -2.39 -0.01 1.13 16 30 H 0.05 0.89 7.53 -2.38 -0.02 0.87 16 31 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.76 7.21 -2.39 -0.02 1.74 16 34 H 0.10 1.37 4.54 -2.38 -0.01 1.36 16 35 H 0.09 2.50 8.07 -2.38 -0.02 2.48 16 36 H 0.09 2.61 7.37 -2.39 -0.02 2.60 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 2.46 8.03 -2.39 -0.02 2.44 16 42 H 0.06 2.23 7.87 -2.39 -0.02 2.21 16 43 H 0.00 0.24 7.45 -2.39 -0.02 0.22 16 44 H 0.01 0.48 7.14 -2.39 -0.02 0.46 16 45 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 46 H 0.24 14.10 8.31 -92.71 -0.77 13.32 16 47 H 0.17 1.23 8.00 -2.91 -0.02 1.21 16 48 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 49 H 0.18 2.09 8.06 -2.91 -0.02 2.06 16 50 H 0.13 3.68 7.23 -2.91 -0.02 3.65 16 Total: -1.00 -74.19 402.99 4.07 -70.12 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.91 Total: 12.57 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 8.79 Total: 23.90 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -6.30 Total: -119.47 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -1.36 Total: -34.27 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -74.19 4.07 -70.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264111375.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.253 kcal (2) G-P(sol) polarization free energy of solvation -74.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds