Wall clock time and date at job start Tue Mar 31 2020 18:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47443 * 2 1 4 4 C 1.50704 * 109.46567 * 120.00232 * 2 1 3 5 5 C 1.41260 * 126.70477 * 274.99060 * 4 2 1 6 6 C 1.36821 * 103.84973 * 179.97438 * 5 4 2 7 7 C 1.47511 * 126.94808 * 179.97438 * 6 5 4 8 8 O 1.21581 * 119.99498 * 352.75034 * 7 6 5 9 9 N 1.34773 * 119.99939 * 172.74371 * 7 6 5 10 10 C 1.46928 * 120.63389 * 353.06773 * 9 7 6 11 11 C 1.53195 * 108.77182 * 233.58528 * 10 9 7 12 12 C 1.53037 * 109.31280 * 305.36098 * 11 10 9 13 13 C 1.53007 * 109.46095 * 181.38917 * 12 11 10 14 14 H 1.09001 * 109.46729 * 300.00698 * 13 12 11 15 15 C 1.52998 * 109.46747 * 60.00093 * 13 12 11 16 16 N 1.46492 * 109.47334 * 180.02562 * 13 12 11 17 17 C 1.36936 * 120.00502 * 154.99933 * 16 13 12 18 18 H 1.08003 * 119.99447 * 0.02562 * 17 16 13 19 19 C 1.38807 * 120.00421 * 179.97438 * 17 16 13 20 20 N 1.31616 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00061 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47204 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47294 * 119.99963 * 21 19 17 24 24 H 1.48498 * 109.47147 * 239.99935 * 21 19 17 25 25 C 1.53041 * 109.53627 * 61.36997 * 12 11 10 26 26 C 1.46931 * 120.62633 * 173.04240 * 9 7 6 27 27 O 1.34646 * 106.10951 * 0.24076 * 6 5 4 28 28 N 1.20890 * 111.46956 * 359.56838 * 27 6 5 29 29 H 1.08998 * 109.47036 * 59.99690 * 1 2 3 30 30 H 1.08995 * 109.47827 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47068 * 300.00039 * 1 2 3 32 32 H 1.09005 * 109.46739 * 239.99526 * 2 1 3 33 33 H 1.08999 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47258 * 300.00174 * 3 2 1 35 35 H 1.09005 * 109.47020 * 59.99932 * 3 2 1 36 36 H 1.08007 * 128.07636 * 359.97396 * 5 4 2 37 37 H 1.09001 * 109.58426 * 113.79574 * 10 9 7 38 38 H 1.08996 * 109.58120 * 353.37022 * 10 9 7 39 39 H 1.08999 * 109.49114 * 185.41627 * 11 10 9 40 40 H 1.08994 * 109.49819 * 65.31866 * 11 10 9 41 41 H 1.08999 * 109.46274 * 301.34868 * 12 11 10 42 42 H 1.08998 * 109.47268 * 60.00322 * 15 13 12 43 43 H 1.09000 * 109.46744 * 180.02562 * 15 13 12 44 44 H 1.09006 * 109.47301 * 300.00005 * 15 13 12 45 45 H 0.97013 * 119.99948 * 334.99765 * 16 13 12 46 46 H 0.96997 * 120.00102 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.49911 * 58.58961 * 25 12 11 48 48 H 1.09006 * 109.49895 * 178.64939 * 25 12 11 49 49 H 1.08998 * 109.58542 * 6.62840 * 26 9 7 50 50 H 1.09002 * 109.70320 * 246.26811 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7105 1.2305 5 6 2.2207 -0.1479 2.5125 6 6 2.6839 -1.1932 3.2640 7 6 3.0481 -1.1649 4.6931 8 8 3.0746 -0.1076 5.2928 9 7 3.3514 -2.3110 5.3341 10 6 3.1784 -3.6094 4.6685 11 6 2.3129 -4.5078 5.5577 12 6 2.9390 -4.5945 6.9514 13 6 2.0959 -5.5188 7.8324 14 1 1.0842 -5.1211 7.9124 15 6 2.0473 -6.9144 7.2072 16 7 2.6947 -5.6015 9.1668 17 6 1.9159 -5.9154 10.2485 18 1 0.8603 -6.1025 10.1177 19 6 2.4834 -5.9943 11.5128 20 7 3.7699 -5.7669 11.6721 21 14 1.4211 -6.4233 12.9883 22 1 0.0189 -6.6301 12.5453 23 1 1.9299 -7.6674 13.6196 24 1 1.4699 -5.3128 13.9730 25 6 2.9889 -3.1990 7.5778 26 6 3.8620 -2.2858 6.7116 27 8 2.7456 -2.2516 2.4340 28 7 2.3765 -1.9623 1.3198 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6768 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.0411 0.8699 2.8262 37 1 4.1523 -4.0748 4.5165 38 1 2.6864 -3.4642 3.7068 39 1 2.2563 -5.5051 5.1216 40 1 1.3106 -4.0864 5.6346 41 1 3.9504 -4.9928 6.8711 42 1 3.0590 -7.3121 7.1271 43 1 1.4464 -7.5727 7.8346 44 1 1.6015 -6.8525 6.2144 45 1 3.6430 -5.4339 9.2842 46 1 4.1664 -5.8217 12.5556 47 1 1.9802 -2.7900 7.6358 48 1 3.4128 -3.2649 8.5799 49 1 3.8211 -1.2673 7.0978 50 1 4.8921 -2.6419 6.7283 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267208544.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:39 Heat of formation + Delta-G solvation = 29.238026 kcal Electronic energy + Delta-G solvation = -29453.754630 eV Core-core repulsion = 25484.401846 eV Total energy + Delta-G solvation = -3969.352784 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -45.32213 -40.24997 -38.05854 -37.00716 -35.52776 -33.04846 -32.82383 -32.33862 -30.90513 -30.71906 -28.26941 -27.68012 -25.95971 -24.53685 -24.05111 -23.58871 -22.66926 -21.93042 -20.69625 -19.83675 -19.30918 -18.07049 -17.81026 -17.10144 -16.64636 -16.32312 -15.34022 -15.05046 -14.85375 -14.75416 -14.30152 -14.04913 -13.98405 -13.82393 -13.74915 -13.57356 -13.37875 -12.81661 -12.65584 -12.56161 -12.29176 -12.12092 -12.03152 -11.97383 -11.78750 -11.62846 -11.29015 -11.16797 -11.02117 -10.88357 -10.76782 -10.48154 -10.44296 -10.19946 -10.16505 -10.14224 -9.97968 -9.78294 -9.58476 -8.91232 -8.73284 -6.94028 -5.76195 -3.03983 0.55472 1.74406 2.31708 2.74822 2.95860 3.43278 3.49413 3.51179 3.57980 3.99717 4.40608 4.56771 4.58197 4.62112 4.69682 4.80110 4.94348 4.99207 5.06419 5.08266 5.15725 5.23513 5.34123 5.37083 5.38546 5.47643 5.53861 5.58392 5.63190 5.64987 5.74818 5.76435 5.78183 5.90150 5.93540 6.02431 6.09300 6.14197 6.30786 6.32970 6.47267 6.55413 6.66424 6.80220 6.94398 7.09376 7.13989 7.67035 7.71831 7.88978 8.42829 9.54153 10.12231 10.46865 11.46539 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024695 B = 0.002229 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.570404 B =12556.570869 C =12896.547463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.017 4.017 3 C -0.147 4.147 4 C 0.020 3.980 5 C -0.150 4.150 6 C -0.075 4.075 7 C 0.600 3.400 8 O -0.517 6.517 9 N -0.591 5.591 10 C 0.096 3.904 11 C -0.128 4.128 12 C -0.091 4.091 13 C 0.178 3.822 14 H 0.045 0.955 15 C -0.166 4.166 16 N -0.723 5.723 17 C -0.233 4.233 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.904 3.096 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.292 1.292 25 C -0.122 4.122 26 C 0.111 3.889 27 O 0.116 5.884 28 N -0.349 5.349 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.181 0.819 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.038 0.962 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.063 0.937 48 H 0.095 0.905 49 H 0.093 0.907 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.370 11.277 -24.696 27.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.037 4.037 3 C -0.204 4.204 4 C -0.138 4.138 5 C -0.173 4.173 6 C -0.141 4.141 7 C 0.385 3.615 8 O -0.394 6.394 9 N -0.323 5.323 10 C -0.026 4.026 11 C -0.166 4.166 12 C -0.110 4.110 13 C 0.068 3.932 14 H 0.063 0.937 15 C -0.226 4.226 16 N -0.364 5.364 17 C -0.365 4.365 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.735 3.265 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.219 1.219 25 C -0.160 4.160 26 C -0.011 4.011 27 O 0.046 5.954 28 N -0.052 5.052 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.199 0.801 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.057 0.943 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.113 0.887 49 H 0.111 0.889 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.450 10.781 -25.079 27.408 hybrid contribution -0.302 0.273 1.314 1.376 sum -2.753 11.054 -23.765 26.354 Atomic orbital electron populations 1.21842 0.93151 1.02592 1.02696 1.19564 0.96320 0.95500 0.92270 1.21865 1.01580 0.94168 1.02836 1.23601 1.02468 0.90363 0.97342 1.22791 1.01726 1.01314 0.91447 1.24289 1.07209 0.88212 0.94367 1.16667 0.77961 0.84536 0.82340 1.90860 1.53307 1.30119 1.65117 1.48109 1.62864 1.05703 1.15646 1.22215 1.01270 0.82849 0.96273 1.22023 0.99124 0.99634 0.95853 1.21407 1.00193 0.95807 0.93632 1.20209 0.95381 0.91865 0.85735 0.93727 1.22500 1.00972 1.00434 0.98740 1.42416 1.09080 1.83881 1.01019 1.19259 0.92069 1.38861 0.86283 0.91299 1.24710 0.95925 1.02935 0.97498 1.69657 1.09947 1.56488 1.22089 0.86163 0.79403 0.77585 0.83324 1.20655 1.21991 1.21942 1.21904 1.00263 0.94025 0.99823 1.21891 0.97637 1.02423 0.79101 1.85120 1.62447 1.33933 1.13922 1.73712 1.14160 1.17044 1.00245 0.91373 0.92249 0.92005 0.89183 0.92129 0.91355 0.91841 0.80138 0.90483 0.88843 0.89935 0.91546 0.91183 0.93548 0.93027 0.94309 0.78318 0.93639 0.91835 0.88657 0.88896 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.18 37.16 0.34 -0.52 16 2 C -0.02 -0.12 3.38 -91.77 -0.31 -0.43 16 3 C -0.15 -0.77 8.81 37.16 0.33 -0.44 16 4 C 0.02 0.20 6.20 -82.16 -0.51 -0.31 16 5 C -0.15 -1.52 10.13 -38.95 -0.39 -1.91 16 6 C -0.08 -0.88 6.89 -36.32 -0.25 -1.13 16 7 C 0.60 8.06 7.68 -12.48 -0.10 7.96 16 8 O -0.52 -8.29 16.35 5.29 0.09 -8.20 16 9 N -0.59 -7.43 2.97 -174.00 -0.52 -7.95 16 10 C 0.10 1.04 6.14 -3.71 -0.02 1.02 16 11 C -0.13 -1.53 5.04 -26.61 -0.13 -1.66 16 12 C -0.09 -1.35 1.79 -90.58 -0.16 -1.51 16 13 C 0.18 3.30 2.47 -67.93 -0.17 3.14 16 14 H 0.04 0.88 8.08 -51.93 -0.42 0.46 16 15 C -0.17 -2.85 9.14 37.16 0.34 -2.51 16 16 N -0.72 -17.12 4.41 -53.43 -0.24 -17.36 16 17 C -0.23 -6.29 9.93 -15.06 -0.15 -6.44 16 18 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 20 N -0.93 -27.59 13.06 55.49 0.72 -26.86 16 21 Si 0.90 22.25 29.55 -169.99 -5.02 17.22 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 C -0.12 -1.87 5.22 -26.61 -0.14 -2.01 16 26 C 0.11 1.47 6.44 -3.71 -0.02 1.45 16 27 O 0.12 1.31 7.95 15.54 0.12 1.43 16 28 N -0.35 -3.97 12.04 33.52 0.40 -3.57 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.32 7.48 -51.93 -0.39 -0.07 16 36 H 0.18 1.53 7.65 -52.48 -0.40 1.13 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.96 4.28 -52.50 -0.22 0.73 16 39 H 0.08 0.90 6.36 -51.93 -0.33 0.57 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.04 0.54 6.40 -51.93 -0.33 0.21 16 45 H 0.38 9.64 7.58 -40.81 -0.31 9.33 16 46 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.10 1.71 7.40 -51.93 -0.38 1.33 16 49 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 50 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 395.82 15.07 5.96 5.96 Total: -1.00 -30.97 395.82 -8.12 -39.09 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -8.20 Total: 6.05 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -1.45 Total: -5.82 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.38 Total: -55.74 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: 0.21 Total: -6.77 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.97 -8.12 -39.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267208544.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.323 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds