Wall clock time and date at job start Tue Mar 31 2020 19:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 C 1.50689 * 109.47271 * 119.99778 * 2 1 3 5 5 N 1.30020 * 127.33902 * 300.14702 * 4 2 1 6 6 O 1.20660 * 112.30451 * 180.30050 * 5 4 2 7 7 C 1.33494 * 113.15569 * 359.71564 * 6 5 4 8 8 C 1.37364 * 106.34319 * 0.02562 * 7 6 5 9 9 C 1.47394 * 128.56813 * 179.97438 * 8 7 6 10 10 O 1.21607 * 120.00192 * 144.19285 * 9 8 7 11 11 N 1.34780 * 120.00023 * 324.19542 * 9 8 7 12 12 C 1.46926 * 120.62753 * 354.19707 * 11 9 8 13 13 C 1.53192 * 108.77455 * 233.62947 * 12 11 9 14 14 C 1.53040 * 109.31391 * 305.36426 * 13 12 11 15 15 C 1.53043 * 109.53328 * 61.36628 * 14 13 12 16 16 H 1.09002 * 109.49723 * 58.61691 * 15 14 13 17 17 C 1.53007 * 109.49602 * 178.67974 * 15 14 13 18 18 H 1.09002 * 109.46886 * 305.00638 * 17 15 14 19 19 C 1.52999 * 109.46757 * 64.99907 * 17 15 14 20 20 N 1.46496 * 109.46829 * 184.99963 * 17 15 14 21 21 C 1.36946 * 119.99439 * 155.00062 * 20 17 15 22 22 H 1.08000 * 120.00009 * 0.02562 * 21 20 17 23 23 C 1.38806 * 119.99711 * 179.97438 * 21 20 17 24 24 N 1.31626 * 120.00438 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00044 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46974 * 90.00340 * 25 23 21 27 27 H 1.48499 * 109.47156 * 210.00283 * 25 23 21 28 28 H 1.48500 * 109.46797 * 330.00581 * 25 23 21 29 29 C 1.46921 * 120.63150 * 174.21868 * 11 9 8 30 30 H 1.08997 * 109.47197 * 299.99919 * 1 2 3 31 31 H 1.08997 * 109.46995 * 60.00545 * 1 2 3 32 32 H 1.08997 * 109.46677 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47197 * 240.00081 * 2 1 3 34 34 H 1.09000 * 109.46997 * 59.99522 * 3 2 1 35 35 H 1.08999 * 109.47376 * 180.02562 * 3 2 1 36 36 H 1.09007 * 109.47138 * 300.00004 * 3 2 1 37 37 H 1.08000 * 126.82996 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.58405 * 113.84343 * 12 11 9 39 39 H 1.08998 * 109.70647 * 353.48973 * 12 11 9 40 40 H 1.09002 * 109.49337 * 185.41642 * 13 12 11 41 41 H 1.08997 * 109.49801 * 65.32056 * 13 12 11 42 42 H 1.08997 * 109.46223 * 301.34852 * 14 13 12 43 43 H 1.09000 * 109.45035 * 181.37593 * 14 13 12 44 44 H 1.09002 * 109.46916 * 179.97438 * 19 17 15 45 45 H 1.09001 * 109.47568 * 300.00129 * 19 17 15 46 46 H 1.09005 * 109.46922 * 60.00174 * 19 17 15 47 47 H 0.96994 * 120.00356 * 335.00575 * 20 17 15 48 48 H 0.96992 * 120.00265 * 179.97438 * 24 23 21 49 49 H 1.09000 * 109.58572 * 6.58654 * 29 11 9 50 50 H 1.09000 * 109.58885 * 246.15770 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.8058 -0.3944 2.4711 6 8 2.3472 -1.1485 3.2419 7 6 3.0349 -2.1171 2.6329 8 6 2.8817 -1.9103 1.2836 9 6 3.4360 -2.6940 0.1650 10 8 2.7851 -2.8485 -0.8505 11 7 4.6642 -3.2393 0.2677 12 6 5.5133 -2.9574 1.4332 13 6 6.8703 -2.4436 0.9420 14 6 7.4677 -3.4524 -0.0416 15 6 6.5404 -3.5994 -1.2503 16 1 6.4105 -2.6289 -1.7292 17 6 7.1544 -4.5833 -2.2482 18 1 8.1605 -4.2553 -2.5098 19 6 7.2200 -5.9755 -1.6171 20 7 6.3274 -4.6333 -3.4564 21 6 6.8830 -5.0051 -4.6515 22 1 7.9308 -5.2620 -4.7033 23 6 6.0993 -5.0530 -5.7962 24 7 4.8223 -4.7405 -5.7331 25 14 6.8574 -5.5595 -7.4267 26 1 6.7453 -7.0314 -7.5886 27 1 6.1402 -4.8833 -8.5373 28 1 8.2892 -5.1666 -7.4501 29 6 5.1797 -4.1264 -0.7839 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 3.6002 -2.9060 3.1068 38 1 5.6558 -3.8707 2.0109 39 1 5.0401 -2.2000 2.0581 40 1 7.5424 -2.3219 1.7915 41 1 6.7368 -1.4839 0.4427 42 1 7.5778 -4.4184 0.4511 43 1 8.4444 -3.1007 -0.3739 44 1 7.6570 -6.6766 -2.3282 45 1 7.8353 -5.9384 -0.7181 46 1 6.2140 -6.3036 -1.3555 47 1 5.3863 -4.4029 -3.4098 48 1 4.2748 -4.7736 -6.5330 49 1 4.4854 -4.1392 -1.6240 50 1 5.2950 -5.1350 -0.3870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268171047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:49 Heat of formation + Delta-G solvation = 27.624251 kcal Electronic energy + Delta-G solvation = -30283.433902 eV Core-core repulsion = 26314.011140 eV Total energy + Delta-G solvation = -3969.422762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.11608 -40.19920 -37.91948 -36.39831 -35.53850 -33.37490 -32.44679 -31.93995 -31.80526 -29.77363 -27.88294 -27.31842 -26.24628 -24.69345 -23.92226 -23.64239 -23.19111 -21.25058 -20.29974 -19.92354 -18.74570 -17.93739 -17.67941 -17.16128 -16.72477 -16.02045 -15.26662 -14.96440 -14.84045 -14.71690 -14.56829 -14.10412 -13.86551 -13.77273 -13.47161 -13.44746 -13.01257 -12.96682 -12.77281 -12.49315 -12.37873 -12.03473 -11.88851 -11.58412 -11.50608 -11.47274 -11.23356 -11.02040 -10.93893 -10.85171 -10.65686 -10.46674 -10.27224 -10.26003 -10.12832 -10.03213 -9.88206 -9.70609 -9.52449 -8.88224 -8.53175 -6.92370 -5.70870 -3.00765 0.94054 1.65732 2.60370 2.91795 3.12656 3.45885 3.50698 3.52884 3.81725 4.07330 4.46768 4.59172 4.65668 4.71889 4.84739 4.89908 4.95604 4.95947 4.99933 5.17024 5.23412 5.26294 5.36919 5.47853 5.55879 5.59396 5.60910 5.65455 5.73087 5.75244 5.78787 5.82884 5.90139 5.92821 6.05174 6.06548 6.09670 6.18010 6.22181 6.34069 6.35540 6.53576 6.61313 6.72976 6.88937 7.11475 7.37075 7.73664 8.00601 8.15139 8.46698 9.57677 10.15476 10.49480 11.51167 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.003226 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.713143 B = 8678.328991 C =10159.455233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.024 4.024 3 C -0.143 4.143 4 C 0.076 3.924 5 N -0.355 5.355 6 O 0.096 5.904 7 C -0.021 4.021 8 C -0.238 4.238 9 C 0.588 3.412 10 O -0.513 6.513 11 N -0.602 5.602 12 C 0.096 3.904 13 C -0.133 4.133 14 C -0.114 4.114 15 C -0.104 4.104 16 H 0.075 0.925 17 C 0.181 3.819 18 H 0.049 0.951 19 C -0.170 4.170 20 N -0.725 5.725 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.929 5.929 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 C 0.117 3.883 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.226 0.774 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.038 0.962 46 H 0.048 0.952 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.102 0.898 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 7.574 21.467 22.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.043 4.043 3 C -0.201 4.201 4 C -0.087 4.087 5 N -0.060 5.060 6 O 0.035 5.965 7 C -0.103 4.103 8 C -0.245 4.245 9 C 0.374 3.626 10 O -0.389 6.389 11 N -0.336 5.336 12 C -0.027 4.027 13 C -0.172 4.172 14 C -0.152 4.152 15 C -0.124 4.124 16 H 0.093 0.907 17 C 0.070 3.930 18 H 0.067 0.933 19 C -0.230 4.230 20 N -0.367 5.367 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.004 4.004 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.242 0.758 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.120 0.880 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.026 8.406 21.372 23.054 hybrid contribution 0.609 -0.949 -1.364 1.769 sum -1.417 7.457 20.008 21.399 Atomic orbital electron populations 1.21789 0.93160 1.02545 1.02353 1.19740 0.96629 0.95573 0.92360 1.21831 1.01296 0.94379 1.02553 1.24818 0.96256 0.93799 0.93825 1.73598 1.16509 1.14087 1.01834 1.84575 1.48225 1.29774 1.33904 1.26457 0.97057 0.94818 0.91921 1.22424 1.06742 1.00981 0.94370 1.16939 0.81419 0.78745 0.85471 1.90884 1.59233 1.59164 1.29613 1.48016 1.14550 1.48256 1.22734 1.22008 0.91804 1.00845 0.88032 1.21907 0.95612 0.99849 0.99786 1.21614 0.98882 0.99006 0.95717 1.21795 0.94048 1.00855 0.95708 0.90697 1.20170 0.94701 0.91615 0.86516 0.93291 1.22585 1.00526 1.00580 0.99285 1.42496 1.09570 1.81470 1.03195 1.19209 0.94118 1.37855 0.85989 0.91270 1.24742 0.95745 1.02486 0.97852 1.69672 1.05054 1.54716 1.28254 0.86240 0.78069 0.78041 0.84124 1.21799 1.21826 1.20838 1.21927 0.96177 0.91637 0.90635 0.92346 0.91401 0.92189 0.87633 0.92208 0.92487 0.91343 0.75765 0.91008 0.89999 0.90818 0.91522 0.91421 0.91515 0.92849 0.94313 0.93253 0.78066 0.93497 0.87957 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.18 37.16 0.34 -1.19 16 2 C -0.02 -0.29 3.38 -91.77 -0.31 -0.60 16 3 C -0.14 -1.48 9.17 37.16 0.34 -1.14 16 4 C 0.08 0.96 6.10 -79.77 -0.49 0.48 16 5 N -0.35 -4.29 12.01 34.78 0.42 -3.87 16 6 O 0.10 0.96 11.06 18.65 0.21 1.17 16 7 C -0.02 -0.18 9.98 30.41 0.30 0.13 16 8 C -0.24 -2.93 5.66 -102.89 -0.58 -3.51 16 9 C 0.59 8.95 7.60 -12.53 -0.10 8.86 16 10 O -0.51 -10.15 15.62 5.27 0.08 -10.06 16 11 N -0.60 -7.95 2.97 -174.05 -0.52 -8.47 16 12 C 0.10 0.85 5.50 -3.71 -0.02 0.83 16 13 C -0.13 -1.23 6.08 -26.61 -0.16 -1.40 16 14 C -0.11 -1.30 4.89 -26.69 -0.13 -1.43 16 15 C -0.10 -1.62 2.27 -90.49 -0.21 -1.83 16 16 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 17 C 0.18 3.41 2.67 -67.93 -0.18 3.23 16 18 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 19 C -0.17 -2.86 8.76 37.16 0.33 -2.54 16 20 N -0.73 -17.98 5.06 -53.42 -0.27 -18.25 16 21 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 25 Si 0.90 22.57 29.55 -169.99 -5.02 17.54 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 29 C 0.12 1.85 5.19 -3.71 -0.02 1.83 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.11 1.51 7.15 -51.93 -0.37 1.14 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.23 0.93 7.13 -52.49 -0.37 0.56 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.59 4.60 -51.93 -0.24 0.35 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.71 6.63 -51.93 -0.34 0.37 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.04 0.52 6.60 -51.93 -0.34 0.18 16 46 H 0.05 0.84 6.23 -51.93 -0.32 0.51 16 47 H 0.38 10.33 6.48 -40.82 -0.26 10.06 16 48 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 49 H 0.10 2.05 5.82 -51.93 -0.30 1.74 16 50 H 0.07 1.09 6.06 -51.93 -0.31 0.78 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -33.68 391.12 -7.53 -41.21 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.91 Total: 8.21 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.13 Total: -5.53 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.35 Total: -58.42 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.29 Total: -8.89 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.68 -7.53 -41.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268171047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.831 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds