Wall clock time and date at job start Tue Mar 31 2020 19:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.50703 * 109.46855 * 119.99359 * 2 1 3 5 5 N 1.30019 * 127.33627 * 300.12720 * 4 2 1 6 6 O 1.20656 * 112.29807 * 180.29113 * 5 4 2 7 7 C 1.33489 * 113.15784 * 359.73602 * 6 5 4 8 8 C 1.37351 * 106.34345 * 359.97438 * 7 6 5 9 9 C 1.47405 * 128.56487 * 179.97438 * 8 7 6 10 10 O 1.21612 * 119.99782 * 228.25872 * 9 8 7 11 11 N 1.34777 * 120.00032 * 47.98706 * 9 8 7 12 12 C 1.46925 * 120.62854 * 355.67582 * 11 9 8 13 13 C 1.53618 * 108.54401 * 126.36794 * 12 11 9 14 14 C 1.53046 * 109.24168 * 54.85773 * 13 12 11 15 15 C 1.53040 * 109.53212 * 298.50982 * 14 13 12 16 16 H 1.09003 * 109.49945 * 301.40617 * 15 14 13 17 17 C 1.53005 * 109.49251 * 181.31948 * 15 14 13 18 18 H 1.09003 * 109.47087 * 300.15974 * 17 15 14 19 19 C 1.52993 * 109.47400 * 60.16201 * 17 15 14 20 20 N 1.46501 * 109.47033 * 180.16546 * 17 15 14 21 21 C 1.36931 * 120.00500 * 155.00120 * 20 17 15 22 22 H 1.08002 * 119.99547 * 359.97438 * 21 20 17 23 23 C 1.38812 * 120.00552 * 179.97438 * 21 20 17 24 24 N 1.31622 * 119.99615 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00202 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47269 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47176 * 119.99858 * 25 23 21 28 28 H 1.48497 * 109.47080 * 239.99635 * 25 23 21 29 29 C 1.46925 * 120.63040 * 175.95535 * 11 9 8 30 30 H 1.09005 * 109.47073 * 60.00611 * 1 2 3 31 31 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47739 * 300.00414 * 1 2 3 33 33 H 1.08997 * 109.47259 * 239.99358 * 2 1 3 34 34 H 1.08998 * 109.47212 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47154 * 299.99307 * 3 2 1 36 36 H 1.08997 * 109.47644 * 59.99594 * 3 2 1 37 37 H 1.08008 * 126.82459 * 180.02562 * 7 6 5 38 38 H 1.09007 * 109.58443 * 246.20282 * 12 11 9 39 39 H 1.09005 * 109.58773 * 6.62293 * 12 11 9 40 40 H 1.09000 * 109.63661 * 294.86440 * 13 12 11 41 41 H 1.09004 * 109.43462 * 174.72192 * 13 12 11 42 42 H 1.09007 * 109.45974 * 178.49266 * 14 13 12 43 43 H 1.08994 * 109.44749 * 58.52185 * 14 13 12 44 44 H 1.08996 * 109.47440 * 60.00134 * 19 17 15 45 45 H 1.09006 * 109.47551 * 180.02562 * 19 17 15 46 46 H 1.09002 * 109.47314 * 299.99848 * 19 17 15 47 47 H 0.97001 * 119.99593 * 334.99417 * 20 17 15 48 48 H 0.96998 * 119.99837 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.58844 * 353.36939 * 29 11 9 50 50 H 1.09001 * 109.58501 * 113.80291 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.8059 -0.3940 2.4712 6 8 2.3470 -1.1483 3.2420 7 6 3.0346 -2.1170 2.6331 8 6 2.8806 -1.9109 1.2839 9 6 3.4345 -2.6950 0.1654 10 8 3.9921 -2.1300 -0.7559 11 7 3.3279 -4.0386 0.1665 12 6 2.7474 -4.7425 1.3181 13 6 1.6126 -5.6480 0.8158 14 6 2.1516 -6.5720 -0.2787 15 6 2.6541 -5.7325 -1.4555 16 1 1.8388 -5.1191 -1.8392 17 6 3.1624 -6.6580 -2.5627 18 1 3.9766 -7.2720 -2.1778 19 6 2.0220 -7.5615 -3.0358 20 7 3.6469 -5.8538 -3.6873 21 6 4.5844 -6.3677 -4.5429 22 1 4.9669 -7.3658 -4.3885 23 6 5.0431 -5.6059 -5.6088 24 7 4.5766 -4.3896 -5.7973 25 14 6.3225 -6.3067 -6.7756 26 1 6.6814 -7.6828 -6.3479 27 1 5.7685 -6.3445 -8.1528 28 1 7.5351 -5.4498 -6.7531 29 6 3.7956 -4.8275 -0.9814 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 3.1299 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 3.5989 -2.9065 3.1072 38 1 3.5147 -5.3475 1.8012 39 1 2.3507 -4.0167 2.0280 40 1 0.8072 -5.0354 0.4108 41 1 1.2335 -6.2473 1.6436 42 1 1.3557 -7.2346 -0.6190 43 1 2.9734 -7.1665 0.1204 44 1 1.2078 -6.9476 -3.4208 45 1 2.3842 -8.2212 -3.8244 46 1 1.6615 -8.1599 -2.1991 47 1 3.3036 -4.9572 -3.8258 48 1 4.8968 -3.8574 -6.5423 49 1 4.0906 -4.1578 -1.7892 50 1 4.6466 -5.4393 -0.6819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268171049.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:52 Heat of formation + Delta-G solvation = 24.710598 kcal Electronic energy + Delta-G solvation = -30332.098979 eV Core-core repulsion = 26362.549871 eV Total energy + Delta-G solvation = -3969.549108 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.09319 -40.10854 -37.83156 -36.40339 -35.50686 -33.32751 -32.49151 -31.80702 -31.78092 -29.82880 -28.24929 -27.31478 -26.00933 -24.70509 -23.86325 -23.38070 -22.96203 -21.17594 -20.25006 -19.70949 -19.41224 -17.92907 -17.66422 -17.12509 -16.69420 -15.97853 -15.31047 -14.93047 -14.90832 -14.65935 -14.39142 -14.10401 -13.78147 -13.72646 -13.46626 -13.42283 -13.04546 -12.90041 -12.70112 -12.37665 -12.37367 -12.07834 -11.91730 -11.51160 -11.46945 -11.38130 -11.16886 -11.03658 -10.93433 -10.86655 -10.73672 -10.64714 -10.29103 -10.19500 -10.10821 -10.01600 -9.82444 -9.66007 -9.53768 -8.89550 -8.53237 -6.91976 -5.71404 -3.00796 1.01641 1.69622 2.59398 2.87355 3.14740 3.45979 3.51067 3.53827 3.83316 4.10035 4.49408 4.59968 4.68889 4.76661 4.86841 4.90734 4.95478 4.96516 5.01143 5.18792 5.25972 5.29305 5.38009 5.48344 5.56436 5.60098 5.65200 5.65876 5.74737 5.74993 5.78528 5.88384 5.90085 5.98191 6.07145 6.08497 6.16352 6.17259 6.20004 6.40531 6.45055 6.47796 6.67763 6.70840 6.90466 7.09275 7.41668 7.74213 8.02734 8.17981 8.46110 9.57466 10.14791 10.49096 11.50859 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012609 B = 0.003332 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.160627 B = 8401.294386 C = 9592.714143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.022 4.022 3 C -0.141 4.141 4 C 0.073 3.927 5 N -0.354 5.354 6 O 0.096 5.904 7 C -0.024 4.024 8 C -0.234 4.234 9 C 0.587 3.413 10 O -0.512 6.512 11 N -0.602 5.602 12 C 0.097 3.903 13 C -0.133 4.133 14 C -0.115 4.115 15 C -0.103 4.103 16 H 0.070 0.930 17 C 0.180 3.820 18 H 0.047 0.953 19 C -0.165 4.165 20 N -0.724 5.724 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.928 5.928 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.292 1.292 29 C 0.124 3.876 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.225 0.775 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.052 0.948 46 H 0.038 0.962 47 H 0.384 0.616 48 H 0.254 0.746 49 H 0.109 0.891 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.162 2.573 20.553 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.041 4.041 3 C -0.199 4.199 4 C -0.090 4.090 5 N -0.059 5.059 6 O 0.035 5.965 7 C -0.106 4.106 8 C -0.242 4.242 9 C 0.373 3.627 10 O -0.388 6.388 11 N -0.335 5.335 12 C -0.026 4.026 13 C -0.171 4.171 14 C -0.153 4.153 15 C -0.123 4.123 16 H 0.088 0.912 17 C 0.070 3.930 18 H 0.065 0.935 19 C -0.225 4.225 20 N -0.366 5.366 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.577 5.577 25 Si 0.734 3.266 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 C 0.003 3.997 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.242 0.758 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.218 0.782 48 H 0.064 0.936 49 H 0.127 0.873 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.391 3.745 20.570 22.529 hybrid contribution 1.002 -0.809 -1.229 1.780 sum -7.389 2.935 19.342 20.912 Atomic orbital electron populations 1.21830 0.93315 1.02317 1.02584 1.19705 0.96186 0.96086 0.92159 1.21794 1.01699 0.94021 1.02383 1.24794 0.96914 0.93395 0.93857 1.73586 1.16846 1.13687 1.01790 1.84562 1.48163 1.29905 1.33869 1.26341 0.97767 0.94700 0.91743 1.22425 1.06983 1.00260 0.94513 1.16954 0.79462 0.81600 0.84645 1.90900 1.41894 1.69963 1.36000 1.48066 1.61023 1.05022 1.19375 1.22057 0.96258 0.95964 0.88369 1.21979 0.97678 0.98220 0.99207 1.21636 1.00989 0.97634 0.95045 1.21773 0.97875 0.97057 0.95600 0.91172 1.20169 0.94011 0.91385 0.87439 0.93481 1.22481 0.99939 1.00028 1.00021 1.42456 1.48650 1.16378 1.29093 1.19231 1.14493 0.98582 1.04734 0.91239 1.24727 1.00478 0.96347 0.99206 1.69675 1.46451 1.09442 1.32091 0.86180 0.81355 0.77950 0.81068 1.20634 1.21976 1.21921 1.21768 0.95822 0.94349 0.87714 0.91331 0.92467 0.92173 0.88025 0.92135 0.91380 0.92304 0.75840 0.90946 0.90125 0.91588 0.90938 0.91110 0.91778 0.93621 0.92857 0.94301 0.78207 0.93574 0.87306 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.18 37.16 0.34 -1.13 16 2 C -0.02 -0.27 3.38 -91.77 -0.31 -0.58 16 3 C -0.14 -1.56 9.17 37.16 0.34 -1.22 16 4 C 0.07 0.94 6.10 -79.76 -0.49 0.45 16 5 N -0.35 -4.33 12.01 34.78 0.42 -3.91 16 6 O 0.10 0.99 11.06 18.66 0.21 1.19 16 7 C -0.02 -0.21 10.03 30.41 0.30 0.10 16 8 C -0.23 -2.94 5.53 -102.89 -0.57 -3.51 16 9 C 0.59 9.16 7.54 -12.53 -0.09 9.07 16 10 O -0.51 -10.41 16.25 5.27 0.09 -10.33 16 11 N -0.60 -8.21 2.97 -173.78 -0.52 -8.73 16 12 C 0.10 0.89 5.99 -3.49 -0.02 0.87 16 13 C -0.13 -1.24 6.10 -26.39 -0.16 -1.40 16 14 C -0.12 -1.31 4.85 -26.69 -0.13 -1.44 16 15 C -0.10 -1.59 1.97 -90.50 -0.18 -1.77 16 16 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 17 C 0.18 3.38 2.47 -67.93 -0.17 3.21 16 18 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 19 C -0.16 -2.84 9.14 37.15 0.34 -2.50 16 20 N -0.72 -17.67 4.52 -53.43 -0.24 -17.91 16 21 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -28.35 13.06 55.49 0.72 -27.63 16 25 Si 0.90 22.52 29.55 -169.99 -5.02 17.49 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 C 0.12 2.05 5.46 -3.71 -0.02 2.03 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 1.45 7.73 -51.93 -0.40 1.05 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.23 0.99 7.56 -52.48 -0.40 0.59 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.61 4.48 -51.93 -0.23 0.38 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.78 6.37 -51.93 -0.33 0.45 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.04 0.54 6.41 -51.93 -0.33 0.21 16 47 H 0.38 10.22 7.61 -40.82 -0.31 9.91 16 48 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.11 2.30 6.53 -51.93 -0.34 1.96 16 50 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 397.98 15.07 6.00 6.00 Total: -1.00 -33.30 397.98 -7.63 -40.93 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -8.23 Total: 7.82 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -1.06 Total: -4.94 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.39 Total: -58.17 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.29 Total: -9.13 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.30 -7.63 -40.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268171049.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.641 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds