Wall clock time and date at job start Tue Mar 31 2020 19:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46989 * 2 1 4 4 C 1.50703 * 109.46855 * 119.99359 * 2 1 3 5 5 N 1.30019 * 127.33627 * 300.12720 * 4 2 1 6 6 O 1.20656 * 112.29807 * 180.29113 * 5 4 2 7 7 C 1.33489 * 113.15784 * 359.73602 * 6 5 4 8 8 C 1.37351 * 106.34345 * 359.97438 * 7 6 5 9 9 C 1.47405 * 128.56487 * 179.97438 * 8 7 6 10 10 O 1.21612 * 119.99782 * 228.25872 * 9 8 7 11 11 N 1.34777 * 120.00032 * 47.98706 * 9 8 7 12 12 C 1.46925 * 120.62854 * 355.67582 * 11 9 8 13 13 C 1.53618 * 108.54401 * 126.36794 * 12 11 9 14 14 C 1.53046 * 109.24168 * 54.85773 * 13 12 11 15 15 C 1.53040 * 109.53212 * 298.50982 * 14 13 12 16 16 H 1.09003 * 109.49945 * 301.40617 * 15 14 13 17 17 C 1.53005 * 109.49251 * 181.31948 * 15 14 13 18 18 H 1.09003 * 109.47087 * 300.15974 * 17 15 14 19 19 C 1.52993 * 109.47400 * 60.16201 * 17 15 14 20 20 N 1.46501 * 109.47033 * 180.16546 * 17 15 14 21 21 C 1.36931 * 120.00500 * 155.00120 * 20 17 15 22 22 H 1.08002 * 119.99547 * 359.97438 * 21 20 17 23 23 C 1.38812 * 120.00552 * 179.97438 * 21 20 17 24 24 N 1.31622 * 119.99615 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00202 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47269 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47176 * 119.99858 * 25 23 21 28 28 H 1.48497 * 109.47080 * 239.99635 * 25 23 21 29 29 C 1.46925 * 120.63040 * 175.95535 * 11 9 8 30 30 H 1.09005 * 109.47073 * 60.00611 * 1 2 3 31 31 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47739 * 300.00414 * 1 2 3 33 33 H 1.08997 * 109.47259 * 239.99358 * 2 1 3 34 34 H 1.08998 * 109.47212 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47154 * 299.99307 * 3 2 1 36 36 H 1.08997 * 109.47644 * 59.99594 * 3 2 1 37 37 H 1.08008 * 126.82459 * 180.02562 * 7 6 5 38 38 H 1.09007 * 109.58443 * 246.20282 * 12 11 9 39 39 H 1.09005 * 109.58773 * 6.62293 * 12 11 9 40 40 H 1.09000 * 109.63661 * 294.86440 * 13 12 11 41 41 H 1.09004 * 109.43462 * 174.72192 * 13 12 11 42 42 H 1.09007 * 109.45974 * 178.49266 * 14 13 12 43 43 H 1.08994 * 109.44749 * 58.52185 * 14 13 12 44 44 H 1.08996 * 109.47440 * 60.00134 * 19 17 15 45 45 H 1.09006 * 109.47551 * 180.02562 * 19 17 15 46 46 H 1.09002 * 109.47314 * 299.99848 * 19 17 15 47 47 H 0.97001 * 119.99593 * 334.99417 * 20 17 15 48 48 H 0.96998 * 119.99837 * 180.02562 * 24 23 21 49 49 H 1.08998 * 109.58844 * 353.36939 * 29 11 9 50 50 H 1.09001 * 109.58501 * 113.80291 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.8059 -0.3940 2.4712 6 8 2.3470 -1.1483 3.2420 7 6 3.0346 -2.1170 2.6331 8 6 2.8806 -1.9109 1.2839 9 6 3.4345 -2.6950 0.1654 10 8 3.9921 -2.1300 -0.7559 11 7 3.3279 -4.0386 0.1665 12 6 2.7474 -4.7425 1.3181 13 6 1.6126 -5.6480 0.8158 14 6 2.1516 -6.5720 -0.2787 15 6 2.6541 -5.7325 -1.4555 16 1 1.8388 -5.1191 -1.8392 17 6 3.1624 -6.6580 -2.5627 18 1 3.9766 -7.2720 -2.1778 19 6 2.0220 -7.5615 -3.0358 20 7 3.6469 -5.8538 -3.6873 21 6 4.5844 -6.3677 -4.5429 22 1 4.9669 -7.3658 -4.3885 23 6 5.0431 -5.6059 -5.6088 24 7 4.5766 -4.3896 -5.7973 25 14 6.3225 -6.3067 -6.7756 26 1 6.6814 -7.6828 -6.3479 27 1 5.7685 -6.3445 -8.1528 28 1 7.5351 -5.4498 -6.7531 29 6 3.7956 -4.8275 -0.9814 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 3.1299 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 3.5989 -2.9065 3.1072 38 1 3.5147 -5.3475 1.8012 39 1 2.3507 -4.0167 2.0280 40 1 0.8072 -5.0354 0.4108 41 1 1.2335 -6.2473 1.6436 42 1 1.3557 -7.2346 -0.6190 43 1 2.9734 -7.1665 0.1204 44 1 1.2078 -6.9476 -3.4208 45 1 2.3842 -8.2212 -3.8244 46 1 1.6615 -8.1599 -2.1991 47 1 3.3036 -4.9572 -3.8258 48 1 4.8968 -3.8574 -6.5423 49 1 4.0906 -4.1578 -1.7892 50 1 4.6466 -5.4393 -0.6819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268171049.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:51 Heat of formation + Delta-G solvation = 3.415113 kcal Electronic energy + Delta-G solvation = -30333.022420 eV Core-core repulsion = 26362.549871 eV Total energy + Delta-G solvation = -3970.472549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.00228 -41.27070 -39.11911 -37.35926 -36.97471 -34.82165 -33.69508 -33.07251 -32.72059 -31.32484 -29.84652 -28.19563 -27.09432 -26.20343 -25.09356 -24.54939 -24.11702 -22.34479 -21.13739 -21.11088 -20.50315 -19.15195 -18.83911 -18.57366 -17.79227 -17.12412 -16.73888 -16.41219 -15.96831 -15.69910 -15.53415 -15.44257 -15.31085 -14.92835 -14.56626 -14.36227 -14.27256 -14.11698 -14.01002 -13.80260 -13.40941 -13.21401 -13.01999 -12.86922 -12.80530 -12.54894 -12.43259 -12.38946 -12.32627 -12.10169 -12.02296 -11.91845 -11.81782 -11.68458 -11.43984 -11.24421 -11.16337 -10.96022 -10.94245 -10.60751 -9.68277 -8.97741 -7.91059 -5.19289 0.18530 0.72888 1.45615 1.46841 1.52113 1.56447 1.88022 2.24828 2.57125 2.90777 3.21994 3.42968 3.55078 3.74502 3.86152 3.89801 3.95912 4.02720 4.04019 4.07269 4.11126 4.23470 4.29746 4.43273 4.51659 4.59510 4.63603 4.64245 4.64812 4.77706 4.78694 4.83360 4.86851 4.92303 4.93314 5.00740 5.04270 5.06571 5.17300 5.17768 5.23642 5.29468 5.38811 5.48473 5.51218 5.57510 5.65058 6.30158 6.31856 7.01831 7.18840 7.35590 8.13797 8.34968 9.32790 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012609 B = 0.003332 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.160627 B = 8401.294386 C = 9592.714143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.027 4.027 3 C -0.136 4.136 4 C 0.057 3.943 5 N -0.363 5.363 6 O 0.108 5.892 7 C 0.022 3.978 8 C -0.269 4.269 9 C 0.585 3.415 10 O -0.579 6.579 11 N -0.595 5.595 12 C 0.089 3.911 13 C -0.128 4.128 14 C -0.109 4.109 15 C -0.090 4.090 16 H 0.046 0.954 17 C 0.173 3.827 18 H 0.051 0.949 19 C -0.154 4.154 20 N -0.738 5.738 21 C -0.230 4.230 22 H 0.079 0.921 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.968 3.032 26 H -0.261 1.261 27 H -0.296 1.296 28 H -0.299 1.299 29 C 0.132 3.868 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.277 0.723 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.113 0.887 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.034 0.966 45 H 0.034 0.966 46 H 0.081 0.919 47 H 0.367 0.633 48 H 0.247 0.753 49 H 0.050 0.950 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.912 0.194 24.416 25.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.047 4.047 3 C -0.194 4.194 4 C -0.105 4.105 5 N -0.067 5.067 6 O 0.047 5.953 7 C -0.060 4.060 8 C -0.277 4.277 9 C 0.373 3.627 10 O -0.459 6.459 11 N -0.327 5.327 12 C -0.032 4.032 13 C -0.166 4.166 14 C -0.147 4.147 15 C -0.110 4.110 16 H 0.065 0.935 17 C 0.064 3.936 18 H 0.069 0.931 19 C -0.214 4.214 20 N -0.377 5.377 21 C -0.362 4.362 22 H 0.097 0.903 23 C -0.272 4.272 24 N -0.624 5.624 25 Si 0.798 3.202 26 H -0.185 1.185 27 H -0.224 1.224 28 H -0.226 1.226 29 C 0.010 3.990 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.292 0.708 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.070 0.930 41 H 0.131 0.869 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.100 0.900 47 H 0.198 0.802 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.185 1.290 24.508 26.204 hybrid contribution 1.218 -0.136 -2.312 2.617 sum -7.966 1.153 22.196 23.611 Atomic orbital electron populations 1.21775 0.91762 1.02290 1.03428 1.19677 0.97503 0.96320 0.91152 1.21756 1.00617 0.93602 1.03386 1.24877 0.97564 0.93852 0.94211 1.73586 1.17491 1.14329 1.01334 1.84554 1.47711 1.29763 1.33310 1.27119 0.95028 0.93855 0.89972 1.22129 1.09292 1.01059 0.95215 1.17389 0.78534 0.82163 0.84613 1.90865 1.44937 1.71312 1.38786 1.48115 1.60276 1.04538 1.19734 1.22502 0.97156 0.96587 0.86951 1.21983 0.97056 0.97953 0.99572 1.21628 1.01829 0.97513 0.93690 1.21608 0.96463 0.96535 0.96365 0.93502 1.20483 0.94676 0.91714 0.86698 0.93117 1.22326 0.98639 0.99461 1.00944 1.42704 1.48403 1.16243 1.30388 1.19657 1.13759 0.98490 1.04318 0.90323 1.25537 1.03249 0.96853 1.01521 1.69859 1.48581 1.11087 1.32842 0.85142 0.78488 0.77944 0.78660 1.18546 1.22364 1.22648 1.21409 0.96645 0.93518 0.87473 0.90349 0.92901 0.91366 0.91274 0.93750 0.90234 0.91350 0.70782 0.87743 0.87882 0.92997 0.86898 0.90060 0.90013 0.94719 0.94726 0.89985 0.80174 0.94423 0.93135 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 9.18 71.98 0.66 -2.16 16 2 C -0.03 -0.70 3.38 -11.54 -0.04 -0.74 16 3 C -0.14 -3.14 9.17 71.98 0.66 -2.48 16 4 C 0.06 1.46 6.10 45.16 0.28 1.73 16 5 N -0.36 -8.29 12.01 -44.78 -0.54 -8.82 16 6 O 0.11 1.86 11.06 77.02 0.85 2.72 16 7 C 0.02 0.30 10.03 67.61 0.68 0.98 16 8 C -0.27 -6.55 5.53 -18.75 -0.10 -6.65 16 9 C 0.58 18.89 7.54 86.66 0.65 19.54 16 10 O -0.58 -25.78 16.25 -4.07 -0.07 -25.85 16 11 N -0.60 -15.93 2.97 -821.96 -2.44 -18.37 16 12 C 0.09 1.28 5.99 86.51 0.52 1.80 16 13 C -0.13 -1.83 6.10 30.82 0.19 -1.64 16 14 C -0.11 -2.09 4.85 30.62 0.15 -1.95 16 15 C -0.09 -2.75 1.97 -10.71 -0.02 -2.77 16 16 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 17 C 0.17 6.45 2.47 44.99 0.11 6.56 16 18 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 19 C -0.15 -5.13 9.14 71.98 0.66 -4.47 16 20 N -0.74 -37.51 4.52 -322.94 -1.46 -38.97 16 21 C -0.23 -12.88 9.93 84.03 0.83 -12.05 16 22 H 0.08 4.18 7.83 -2.91 -0.02 4.15 16 23 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 24 N -0.97 -62.54 13.06 21.65 0.28 -62.26 16 25 Si 0.97 47.55 29.55 68.60 2.03 49.58 16 26 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 28 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 29 C 0.13 4.49 5.46 86.36 0.47 4.96 16 30 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 2.22 7.73 -2.39 -0.02 2.20 16 34 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 37 H 0.28 0.68 7.56 -2.91 -0.02 0.66 16 38 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.10 1.04 4.48 -2.38 -0.01 1.03 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.44 6.37 -2.38 -0.02 1.42 16 43 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 46 H 0.08 2.02 6.41 -2.39 -0.02 2.00 16 47 H 0.37 20.96 7.61 -92.71 -0.71 20.25 16 48 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 49 H 0.05 2.33 6.53 -2.39 -0.02 2.32 16 50 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -80.83 397.98 5.05 -75.78 By element: Atomic # 1 Polarization: 29.54 SS G_CDS: 0.23 Total: 29.77 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 6.16 Total: -3.58 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -4.15 Total: -128.42 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: 0.79 Total: -23.13 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -80.83 5.05 -75.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268171049.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.196 kcal (2) G-P(sol) polarization free energy of solvation -80.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds