Wall clock time and date at job start Tue Mar 31 2020 18:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.88682 * 2 1 4 4 C 1.55133 * 110.93732 * 124.06829 * 2 1 3 5 5 N 1.47429 * 104.72155 * 155.28664 * 4 2 1 6 6 C 1.34770 * 125.64611 * 155.81495 * 5 4 2 7 7 O 1.21287 * 120.00057 * 179.69783 * 6 5 4 8 8 C 1.50701 * 120.00399 * 359.70386 * 6 5 4 9 9 C 1.53889 * 113.59064 * 179.97438 * 8 6 5 10 10 C 1.53256 * 86.98099 * 89.64949 * 9 8 6 11 11 C 1.52462 * 128.58268 * 245.00445 * 10 9 8 12 12 C 1.52465 * 128.58238 * 165.06676 * 10 9 8 13 13 C 1.53249 * 87.69544 * 25.03999 * 10 9 8 14 14 C 1.47024 * 108.70378 * 335.56165 * 5 4 2 15 15 C 1.54325 * 107.27009 * 1.28137 * 14 5 4 16 16 H 1.09000 * 110.72285 * 263.65559 * 15 14 5 17 17 N 1.46896 * 110.72026 * 140.55594 * 15 14 5 18 18 C 1.46906 * 110.99639 * 86.45222 * 17 15 14 19 19 C 1.50706 * 109.46792 * 179.97438 * 18 17 15 20 20 O 1.21293 * 120.00302 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99592 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00003 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99869 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00013 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00011 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00358 * 0.02562 * 24 22 21 27 27 H 1.48494 * 109.47166 * 89.99925 * 26 24 22 28 28 H 1.48501 * 109.47217 * 210.00257 * 26 24 22 29 29 H 1.48504 * 109.46881 * 329.99643 * 26 24 22 30 30 H 1.08998 * 109.47334 * 183.88293 * 1 2 3 31 31 H 1.09000 * 109.47273 * 303.88185 * 1 2 3 32 32 H 1.08998 * 109.46944 * 63.88454 * 1 2 3 33 33 H 1.09007 * 110.49620 * 36.45254 * 4 2 1 34 34 H 1.08993 * 110.34843 * 274.05543 * 4 2 1 35 35 H 1.08993 * 112.88466 * 48.82421 * 8 6 5 36 36 H 1.09002 * 113.64659 * 335.10564 * 9 8 6 37 37 H 1.08999 * 113.64611 * 204.19283 * 9 8 6 38 38 H 1.09000 * 117.51596 * 349.85786 * 11 10 9 39 39 H 1.09007 * 117.51069 * 134.95480 * 11 10 9 40 40 H 1.08999 * 117.51412 * 225.05019 * 12 10 9 41 41 H 1.08999 * 117.51432 * 10.11066 * 12 10 9 42 42 H 1.09004 * 113.64908 * 89.41356 * 13 10 9 43 43 H 1.09004 * 113.64569 * 220.33347 * 13 10 9 44 44 H 1.08999 * 109.88225 * 120.69519 * 14 5 4 45 45 H 1.09000 * 109.87932 * 241.71133 * 14 5 4 46 46 H 1.00899 * 111.00086 * 210.40136 * 17 15 14 47 47 H 1.08991 * 109.47538 * 300.00111 * 18 17 15 48 48 H 1.09000 * 109.47042 * 60.00618 * 18 17 15 49 49 H 0.97001 * 120.00318 * 0.02562 * 21 19 18 50 50 H 0.97003 * 119.99973 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0843 -0.8116 1.2002 5 7 3.4280 -1.2422 0.7727 6 6 4.4489 -1.5602 1.5931 7 8 5.5140 -1.9083 1.1289 8 6 4.2671 -1.4833 3.0871 9 6 5.5245 -1.8783 3.8816 10 6 5.9319 -0.4024 3.8140 11 6 7.1294 0.2220 3.1064 12 6 6.9937 0.3291 4.6278 13 6 4.4456 -0.0632 3.6577 14 6 3.4679 -1.2731 -0.6967 15 6 2.0862 -0.8075 -1.2024 16 1 1.4482 -1.6631 -1.4239 17 7 2.2282 0.0525 -2.3848 18 6 2.2889 -0.7491 -3.6144 19 6 2.4336 0.1655 -4.8035 20 8 2.4820 1.3667 -4.6424 21 7 2.5104 -0.3515 -6.0458 22 6 2.6426 0.4804 -7.1275 23 1 2.6857 1.5500 -6.9841 24 6 2.7212 -0.0525 -8.4083 25 7 2.8484 0.7448 -9.4451 26 14 2.6459 -1.9025 -8.6565 27 1 1.2326 -2.3205 -8.8377 28 1 3.4301 -2.2725 -9.8620 29 1 3.2154 -2.5851 -7.4669 30 1 -0.3634 -1.0253 0.0696 31 1 -0.3634 0.5729 0.8531 32 1 -0.3633 0.4524 -0.9227 33 1 1.4537 -1.6783 1.3988 34 1 2.1523 -0.1800 2.0859 35 1 3.3604 -1.9817 3.4299 36 1 6.1953 -2.5424 3.3366 37 1 5.3115 -2.2272 4.8920 38 1 7.8909 -0.4525 2.7150 39 1 6.9538 1.1242 2.5204 40 1 6.7288 1.3016 5.0425 41 1 7.6655 -0.2750 5.2376 42 1 3.9308 0.0934 4.6056 43 1 4.2517 0.7287 2.9342 44 1 4.2425 -0.5982 -1.0607 45 1 3.6686 -2.2877 -1.0407 46 1 1.4817 0.7297 -2.4311 47 1 3.1445 -1.4226 -3.5673 48 1 1.3730 -1.3315 -3.7140 49 1 2.4720 -1.3121 -6.1746 50 1 2.9029 0.3727 -10.3393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274250537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:30 Heat of formation + Delta-G solvation = -10.818960 kcal Electronic energy + Delta-G solvation = -28986.928590 eV Core-core repulsion = 25015.838806 eV Total energy + Delta-G solvation = -3971.089785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97580 -39.44039 -38.38431 -37.55616 -34.84917 -33.94744 -33.77992 -32.61193 -31.65954 -29.32222 -26.87117 -26.62096 -26.10053 -24.70929 -23.71844 -22.59708 -21.89275 -20.52492 -19.76016 -19.35177 -18.52786 -18.24075 -17.15994 -16.95986 -15.94890 -15.77915 -15.50321 -15.31297 -15.19239 -14.89326 -14.72962 -14.38531 -13.95272 -13.78058 -13.49692 -13.14924 -13.11716 -12.98729 -12.69699 -12.61547 -12.47024 -12.23329 -12.08972 -12.04257 -11.85963 -11.73049 -11.69256 -11.36696 -11.27489 -11.14160 -10.74368 -10.62352 -10.59747 -10.32976 -10.11810 -9.98088 -9.77611 -9.58111 -8.78959 -8.63206 -8.27614 -8.18188 -6.31631 -3.83178 2.46283 2.72125 3.03035 3.06274 3.15072 3.50757 3.72262 3.98685 4.05326 4.09875 4.10594 4.19342 4.24000 4.30848 4.52223 4.61902 4.67836 4.74676 4.88116 5.03466 5.08000 5.12727 5.16216 5.19197 5.22560 5.28472 5.37428 5.41150 5.46966 5.50374 5.52570 5.55254 5.68531 5.70946 5.73613 5.75798 5.81862 5.84609 5.89298 5.90923 5.93640 5.94352 6.03093 6.15701 7.02449 7.33740 7.48735 7.57269 8.04648 8.13548 8.58706 8.94136 9.41581 9.81213 10.81394 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017080 B = 0.002221 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.944802 B =12606.347304 C =13204.318058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 H 0.098 0.902 4 C 0.106 3.894 5 N -0.616 5.616 6 C 0.547 3.453 7 O -0.530 6.530 8 C -0.130 4.130 9 C -0.082 4.082 10 C -0.161 4.161 11 C -0.140 4.140 12 C -0.169 4.169 13 C -0.084 4.084 14 C 0.114 3.886 15 C 0.079 3.921 16 H 0.061 0.939 17 N -0.656 5.656 18 C 0.046 3.954 19 C 0.450 3.550 20 O -0.564 6.564 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.356 0.644 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.371 0.629 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 -7.314 29.549 30.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.117 0.883 4 C -0.017 4.017 5 N -0.350 5.350 6 C 0.335 3.665 7 O -0.406 6.406 8 C -0.151 4.151 9 C -0.119 4.119 10 C -0.161 4.161 11 C -0.177 4.177 12 C -0.206 4.206 13 C -0.121 4.121 14 C -0.009 4.009 15 C -0.032 4.032 16 H 0.078 0.922 17 N -0.290 5.290 18 C -0.087 4.087 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.229 5.229 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.194 1.194 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.177 0.823 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.064 -6.619 29.249 30.008 hybrid contribution -1.021 -1.785 -0.622 2.148 sum -2.085 -8.404 28.628 29.908 Atomic orbital electron populations 1.21746 0.93506 1.02206 1.02739 1.22575 0.96169 1.00410 0.93424 0.88325 1.22442 0.83249 0.98182 0.97853 1.48349 1.12216 1.67387 1.07055 1.19669 0.82523 0.76732 0.87584 1.90708 1.25728 1.46918 1.77278 1.22266 1.00974 1.00034 0.91848 1.22367 0.95391 0.94741 0.99400 1.22136 0.91142 0.96172 1.06621 1.22714 0.98519 1.02129 0.94327 1.22821 1.01799 1.01597 0.94354 1.22460 0.93939 0.94780 1.00957 1.22007 0.98474 1.01536 0.78869 1.22586 0.94731 0.95157 0.90740 0.92153 1.59990 1.53327 1.15951 0.99750 1.21791 1.01250 0.95621 0.89988 1.19660 0.84187 0.89151 0.83452 1.90569 1.53984 1.15149 1.84935 1.42208 1.66442 1.08048 1.06228 1.19427 1.47478 0.93368 0.83082 0.86265 1.25045 0.97608 0.98317 0.95216 1.69623 1.48844 1.34840 0.98757 0.86671 0.78868 0.85159 0.78706 1.19665 1.20141 1.19437 0.92346 0.91903 0.91730 0.91172 0.90325 0.88197 0.89905 0.89107 0.88390 0.88790 0.88841 0.88801 0.88687 0.90923 0.89722 0.91763 0.82273 0.89403 0.93530 0.79679 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.31 37.16 0.35 -0.63 16 2 C -0.11 -0.91 3.09 -88.35 -0.27 -1.18 16 3 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.11 0.80 6.13 -2.41 -0.01 0.79 16 5 N -0.62 -6.72 3.32 -170.37 -0.57 -7.28 16 6 C 0.55 6.62 7.12 -10.99 -0.08 6.54 16 7 O -0.53 -8.53 16.15 5.55 0.09 -8.44 16 8 C -0.13 -1.09 3.33 -90.74 -0.30 -1.39 16 9 C -0.08 -0.69 7.46 -26.14 -0.20 -0.89 16 10 C -0.16 -1.43 2.75 -154.80 -0.43 -1.85 16 11 C -0.14 -1.39 10.53 -26.94 -0.28 -1.67 16 12 C -0.17 -1.32 10.53 -26.94 -0.28 -1.60 16 13 C -0.08 -0.62 7.26 -26.04 -0.19 -0.81 16 14 C 0.11 1.43 6.55 -3.06 -0.02 1.41 16 15 C 0.08 0.86 2.71 -65.88 -0.18 0.69 16 16 H 0.06 0.61 7.80 -51.93 -0.40 0.20 16 17 N -0.66 -9.57 5.92 -106.05 -0.63 -10.20 16 18 C 0.05 0.74 6.02 -4.97 -0.03 0.71 16 19 C 0.45 10.09 7.82 -10.98 -0.09 10.01 16 20 O -0.56 -15.01 15.78 5.55 0.09 -14.92 16 21 N -0.59 -14.01 5.09 -10.96 -0.06 -14.07 16 22 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 23 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.79 13.96 55.50 0.77 -25.01 16 26 Si 0.88 19.42 27.74 -169.99 -4.71 14.70 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 30 H 0.06 0.35 8.07 -51.93 -0.42 -0.07 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.43 7.99 -51.93 -0.41 0.02 16 34 H 0.08 0.47 7.31 -51.93 -0.38 0.09 16 35 H 0.10 0.61 8.09 -51.93 -0.42 0.19 16 36 H 0.08 0.87 7.42 -51.93 -0.39 0.48 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 44 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 45 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.36 5.26 8.19 -39.29 -0.32 4.94 16 47 H 0.09 1.32 8.13 -51.93 -0.42 0.89 16 48 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 49 H 0.37 7.73 5.76 -40.82 -0.24 7.49 16 50 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 405.05 15.07 6.10 6.10 Total: -1.00 -34.56 405.05 -9.61 -44.17 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -8.44 Total: 12.57 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -2.26 Total: 2.38 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.48 Total: -56.56 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.18 Total: -23.36 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.56 -9.61 -44.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274250537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.352 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds