Wall clock time and date at job start Tue Mar 31 2020 18:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.88682 * 2 1 4 4 C 1.55133 * 110.93732 * 124.06829 * 2 1 3 5 5 N 1.47429 * 104.72155 * 155.28664 * 4 2 1 6 6 C 1.34770 * 125.64611 * 155.81495 * 5 4 2 7 7 O 1.21287 * 120.00057 * 179.69783 * 6 5 4 8 8 C 1.50701 * 120.00399 * 359.70386 * 6 5 4 9 9 C 1.53889 * 113.59064 * 179.97438 * 8 6 5 10 10 C 1.53256 * 86.98099 * 89.64949 * 9 8 6 11 11 C 1.52462 * 128.58268 * 245.00445 * 10 9 8 12 12 C 1.52465 * 128.58238 * 165.06676 * 10 9 8 13 13 C 1.53249 * 87.69544 * 25.03999 * 10 9 8 14 14 C 1.47024 * 108.70378 * 335.56165 * 5 4 2 15 15 C 1.54325 * 107.27009 * 1.28137 * 14 5 4 16 16 H 1.09000 * 110.72285 * 263.65559 * 15 14 5 17 17 N 1.46896 * 110.72026 * 140.55594 * 15 14 5 18 18 C 1.46906 * 110.99639 * 86.45222 * 17 15 14 19 19 C 1.50706 * 109.46792 * 179.97438 * 18 17 15 20 20 O 1.21293 * 120.00302 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99592 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00003 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99869 * 0.02562 * 22 21 19 24 24 C 1.38945 * 120.00013 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00011 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00358 * 0.02562 * 24 22 21 27 27 H 1.48494 * 109.47166 * 89.99925 * 26 24 22 28 28 H 1.48501 * 109.47217 * 210.00257 * 26 24 22 29 29 H 1.48504 * 109.46881 * 329.99643 * 26 24 22 30 30 H 1.08998 * 109.47334 * 183.88293 * 1 2 3 31 31 H 1.09000 * 109.47273 * 303.88185 * 1 2 3 32 32 H 1.08998 * 109.46944 * 63.88454 * 1 2 3 33 33 H 1.09007 * 110.49620 * 36.45254 * 4 2 1 34 34 H 1.08993 * 110.34843 * 274.05543 * 4 2 1 35 35 H 1.08993 * 112.88466 * 48.82421 * 8 6 5 36 36 H 1.09002 * 113.64659 * 335.10564 * 9 8 6 37 37 H 1.08999 * 113.64611 * 204.19283 * 9 8 6 38 38 H 1.09000 * 117.51596 * 349.85786 * 11 10 9 39 39 H 1.09007 * 117.51069 * 134.95480 * 11 10 9 40 40 H 1.08999 * 117.51412 * 225.05019 * 12 10 9 41 41 H 1.08999 * 117.51432 * 10.11066 * 12 10 9 42 42 H 1.09004 * 113.64908 * 89.41356 * 13 10 9 43 43 H 1.09004 * 113.64569 * 220.33347 * 13 10 9 44 44 H 1.08999 * 109.88225 * 120.69519 * 14 5 4 45 45 H 1.09000 * 109.87932 * 241.71133 * 14 5 4 46 46 H 1.00899 * 111.00086 * 210.40136 * 17 15 14 47 47 H 1.08991 * 109.47538 * 300.00111 * 18 17 15 48 48 H 1.09000 * 109.47042 * 60.00618 * 18 17 15 49 49 H 0.97001 * 120.00318 * 0.02562 * 21 19 18 50 50 H 0.97003 * 119.99973 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0843 -0.8116 1.2002 5 7 3.4280 -1.2422 0.7727 6 6 4.4489 -1.5602 1.5931 7 8 5.5140 -1.9083 1.1289 8 6 4.2671 -1.4833 3.0871 9 6 5.5245 -1.8783 3.8816 10 6 5.9319 -0.4024 3.8140 11 6 7.1294 0.2220 3.1064 12 6 6.9937 0.3291 4.6278 13 6 4.4456 -0.0632 3.6577 14 6 3.4679 -1.2731 -0.6967 15 6 2.0862 -0.8075 -1.2024 16 1 1.4482 -1.6631 -1.4239 17 7 2.2282 0.0525 -2.3848 18 6 2.2889 -0.7491 -3.6144 19 6 2.4336 0.1655 -4.8035 20 8 2.4820 1.3667 -4.6424 21 7 2.5104 -0.3515 -6.0458 22 6 2.6426 0.4804 -7.1275 23 1 2.6857 1.5500 -6.9841 24 6 2.7212 -0.0525 -8.4083 25 7 2.8484 0.7448 -9.4451 26 14 2.6459 -1.9025 -8.6565 27 1 1.2326 -2.3205 -8.8377 28 1 3.4301 -2.2725 -9.8620 29 1 3.2154 -2.5851 -7.4669 30 1 -0.3634 -1.0253 0.0696 31 1 -0.3634 0.5729 0.8531 32 1 -0.3633 0.4524 -0.9227 33 1 1.4537 -1.6783 1.3988 34 1 2.1523 -0.1800 2.0859 35 1 3.3604 -1.9817 3.4299 36 1 6.1953 -2.5424 3.3366 37 1 5.3115 -2.2272 4.8920 38 1 7.8909 -0.4525 2.7150 39 1 6.9538 1.1242 2.5204 40 1 6.7288 1.3016 5.0425 41 1 7.6655 -0.2750 5.2376 42 1 3.9308 0.0934 4.6056 43 1 4.2517 0.7287 2.9342 44 1 4.2425 -0.5982 -1.0607 45 1 3.6686 -2.2877 -1.0407 46 1 1.4817 0.7297 -2.4311 47 1 3.1445 -1.4226 -3.5673 48 1 1.3730 -1.3315 -3.7140 49 1 2.4720 -1.3121 -6.1746 50 1 2.9029 0.3727 -10.3393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274250537.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:29 Heat of formation + Delta-G solvation = -36.217736 kcal Electronic energy + Delta-G solvation = -28988.029964 eV Core-core repulsion = 25015.838806 eV Total energy + Delta-G solvation = -3972.191158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.76672 -40.50130 -39.89101 -38.52295 -36.25915 -35.62318 -34.55842 -33.78153 -33.38693 -30.36638 -28.26945 -27.32759 -26.70660 -26.05256 -24.94789 -23.29038 -22.74979 -21.46270 -21.17721 -20.57491 -20.18779 -19.18302 -18.12376 -17.80637 -17.47009 -16.92772 -16.56957 -16.50219 -16.15164 -16.01325 -15.77394 -15.56872 -15.02667 -14.94269 -14.86174 -14.45194 -14.18276 -14.06154 -13.78273 -13.73508 -13.35102 -13.32547 -13.21004 -12.96623 -12.76380 -12.74706 -12.53358 -12.43851 -12.38804 -12.12517 -12.00682 -11.96360 -11.53166 -11.49416 -11.27332 -11.06360 -10.88113 -10.52777 -10.46187 -10.26988 -9.68119 -9.43944 -8.43034 -6.04044 1.29211 1.33681 1.43037 1.58340 1.89109 1.92913 2.21327 2.69115 2.84347 3.13330 3.28265 3.40769 3.42534 3.49075 3.59574 3.65209 3.79880 3.96186 4.04813 4.09299 4.11178 4.19896 4.32735 4.40347 4.51575 4.54495 4.55118 4.62628 4.73227 4.74714 4.75881 4.79996 4.86669 4.89049 4.92893 4.96318 5.02486 5.11133 5.15663 5.24132 5.24389 5.26270 5.36594 5.43458 5.51179 5.88337 6.01429 6.33508 6.52871 6.57527 6.85838 7.15895 7.37330 7.93452 8.74526 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017080 B = 0.002221 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.944802 B =12606.347304 C =13204.318058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.081 0.919 4 C 0.107 3.893 5 N -0.615 5.615 6 C 0.536 3.464 7 O -0.584 6.584 8 C -0.124 4.124 9 C -0.081 4.081 10 C -0.172 4.172 11 C -0.172 4.172 12 C -0.147 4.147 13 C -0.072 4.072 14 C 0.114 3.886 15 C 0.085 3.915 16 H 0.085 0.915 17 N -0.677 5.677 18 C 0.061 3.939 19 C 0.449 3.551 20 O -0.613 6.613 21 N -0.591 5.591 22 C -0.329 4.329 23 H 0.055 0.945 24 C -0.016 4.016 25 N -0.933 5.933 26 Si 0.965 3.035 27 H -0.253 1.253 28 H -0.276 1.276 29 H -0.234 1.234 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.053 0.947 37 H 0.122 0.878 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.130 0.870 43 H 0.061 0.939 44 H 0.045 0.955 45 H 0.060 0.940 46 H 0.354 0.646 47 H 0.104 0.896 48 H 0.086 0.914 49 H 0.390 0.610 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 -10.491 32.922 34.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.099 0.901 4 C -0.015 4.015 5 N -0.348 5.348 6 C 0.326 3.674 7 O -0.464 6.464 8 C -0.145 4.145 9 C -0.119 4.119 10 C -0.172 4.172 11 C -0.209 4.209 12 C -0.184 4.184 13 C -0.109 4.109 14 C -0.010 4.010 15 C -0.025 4.025 16 H 0.102 0.898 17 N -0.311 5.311 18 C -0.071 4.071 19 C 0.237 3.763 20 O -0.498 6.498 21 N -0.233 5.233 22 C -0.458 4.458 23 H 0.074 0.926 24 C -0.215 4.215 25 N -0.574 5.574 26 Si 0.785 3.215 27 H -0.178 1.178 28 H -0.201 1.201 29 H -0.158 1.158 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.153 0.847 36 H 0.072 0.928 37 H 0.140 0.860 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.148 0.852 43 H 0.079 0.921 44 H 0.063 0.937 45 H 0.078 0.922 46 H 0.175 0.825 47 H 0.122 0.878 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.567 -9.796 32.664 34.287 hybrid contribution -0.197 -0.639 -1.658 1.787 sum -3.763 -10.435 31.006 32.931 Atomic orbital electron populations 1.21718 0.91567 1.03412 1.02909 1.22541 0.97581 0.99239 0.92594 0.90108 1.22707 0.81422 0.99429 0.97934 1.48465 1.13506 1.66662 1.06210 1.20497 0.81836 0.75693 0.89374 1.90684 1.27873 1.49381 1.78462 1.22276 1.02310 1.01160 0.88736 1.22455 0.94954 0.93800 1.00642 1.22358 0.91980 0.96969 1.05943 1.22649 0.99946 1.01935 0.96360 1.22869 1.00933 1.02169 0.92385 1.22523 0.92685 0.93602 1.02113 1.21880 0.98418 1.00278 0.80430 1.22628 0.94103 0.95764 0.90024 0.89760 1.59900 1.53924 1.16933 1.00381 1.21688 1.03743 0.94270 0.87387 1.20944 0.81304 0.89476 0.84622 1.90546 1.55344 1.18009 1.85890 1.42041 1.67149 1.08452 1.05607 1.19002 1.49762 0.91509 0.85503 0.92642 1.26128 0.96069 1.05326 0.93930 1.69805 1.49795 1.38175 0.99630 0.85366 0.79931 0.76480 0.79754 1.17752 1.20099 1.15754 0.90776 0.90213 0.92954 0.88372 0.88088 0.84653 0.92787 0.85967 0.90348 0.89983 0.87450 0.87889 0.85169 0.92056 0.93682 0.92199 0.82507 0.87809 0.89621 0.77486 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.31 71.98 0.67 -0.70 16 2 C -0.10 -1.45 3.09 -9.33 -0.03 -1.48 16 3 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 4 C 0.11 1.22 6.13 86.93 0.53 1.75 16 5 N -0.62 -12.53 3.32 -811.33 -2.70 -15.23 16 6 C 0.54 12.62 7.12 87.66 0.62 13.25 16 7 O -0.58 -19.66 16.15 -3.05 -0.05 -19.71 16 8 C -0.12 -1.73 3.33 -10.87 -0.04 -1.77 16 9 C -0.08 -1.23 7.46 30.98 0.23 -1.00 16 10 C -0.17 -2.85 2.75 -52.37 -0.14 -3.00 16 11 C -0.17 -3.61 10.53 30.46 0.32 -3.29 16 12 C -0.15 -2.10 10.53 30.46 0.32 -1.77 16 13 C -0.07 -0.85 7.26 31.04 0.23 -0.63 16 14 C 0.11 2.81 6.55 86.73 0.57 3.38 16 15 C 0.09 1.69 2.71 46.10 0.12 1.82 16 16 H 0.08 1.35 7.80 -2.39 -0.02 1.33 16 17 N -0.68 -19.25 5.92 -489.45 -2.90 -22.14 16 18 C 0.06 1.86 6.02 85.56 0.52 2.38 16 19 C 0.45 20.35 7.82 87.66 0.69 21.04 16 20 O -0.61 -34.18 15.78 -3.07 -0.05 -34.23 16 21 N -0.59 -28.14 5.09 -306.98 -1.56 -29.70 16 22 C -0.33 -19.45 10.16 84.04 0.85 -18.60 16 23 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 24 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 25 N -0.93 -56.78 13.96 21.66 0.30 -56.48 16 26 Si 0.96 39.21 27.74 68.60 1.90 41.11 16 27 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 28 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 29 H -0.23 -8.13 6.52 99.48 0.65 -7.48 16 30 H 0.07 0.53 8.07 -2.39 -0.02 0.52 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 0.67 7.99 -2.38 -0.02 0.65 16 34 H 0.10 0.76 7.31 -2.39 -0.02 0.74 16 35 H 0.14 0.97 8.09 -2.39 -0.02 0.95 16 36 H 0.05 1.15 7.42 -2.39 -0.02 1.13 16 37 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 44 H 0.04 1.46 8.03 -2.39 -0.02 1.44 16 45 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.35 10.34 8.19 -89.69 -0.74 9.60 16 47 H 0.10 2.88 8.13 -2.39 -0.02 2.86 16 48 H 0.09 1.99 8.08 -2.39 -0.02 1.97 16 49 H 0.39 15.37 5.76 -92.71 -0.53 14.84 16 50 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -85.27 405.05 0.50 -84.77 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: -0.38 Total: 40.67 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 5.93 Total: 10.95 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -6.85 Total: -123.56 kcal Atomic # 8 Polarization: -53.84 SS G_CDS: -0.10 Total: -53.94 kcal Atomic # 14 Polarization: 39.21 SS G_CDS: 1.90 Total: 41.11 kcal Total: -85.27 0.50 -84.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274250537.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.550 kcal (2) G-P(sol) polarization free energy of solvation -85.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds