Wall clock time and date at job start Tue Mar 31 2020 18:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 110.88471 * 2 1 4 4 C 1.55123 * 110.90304 * 124.08702 * 2 1 3 5 5 N 1.47432 * 104.72137 * 155.27719 * 4 2 1 6 6 C 1.34773 * 125.64848 * 155.81951 * 5 4 2 7 7 O 1.21279 * 120.00024 * 179.69421 * 6 5 4 8 8 C 1.50700 * 120.00157 * 359.68917 * 6 5 4 9 9 C 1.53890 * 113.58717 * 80.78618 * 8 6 5 10 10 C 1.53419 * 86.82533 * 89.71308 * 9 8 6 11 11 C 1.52460 * 128.60798 * 165.09850 * 10 9 8 12 12 C 1.52458 * 128.52230 * 245.01375 * 10 9 8 13 13 C 1.53255 * 87.71922 * 25.01939 * 10 9 8 14 14 C 1.47018 * 108.70105 * 335.55626 * 5 4 2 15 15 C 1.54324 * 107.27264 * 1.28288 * 14 5 4 16 16 H 1.08997 * 110.72225 * 140.55703 * 15 14 5 17 17 N 1.46900 * 110.72346 * 263.83060 * 15 14 5 18 18 C 1.46896 * 111.00081 * 273.54596 * 17 15 14 19 19 C 1.50705 * 109.46928 * 179.97438 * 18 17 15 20 20 O 1.21291 * 119.99983 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99784 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00045 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99722 * 359.97438 * 22 21 19 24 24 C 1.38943 * 119.99973 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99943 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 120.00156 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47099 * 90.00205 * 26 24 22 28 28 H 1.48501 * 109.47258 * 209.99855 * 26 24 22 29 29 H 1.48502 * 109.47077 * 330.00129 * 26 24 22 30 30 H 1.08999 * 109.46985 * 183.88363 * 1 2 3 31 31 H 1.08996 * 109.47441 * 303.88761 * 1 2 3 32 32 H 1.09000 * 109.46590 * 63.88851 * 1 2 3 33 33 H 1.08998 * 110.50072 * 36.43727 * 4 2 1 34 34 H 1.08995 * 110.34782 * 274.03946 * 4 2 1 35 35 H 1.09002 * 112.83084 * 309.67042 * 8 6 5 36 36 H 1.08994 * 113.64879 * 204.18465 * 9 8 6 37 37 H 1.09008 * 113.64580 * 335.19169 * 9 8 6 38 38 H 1.09004 * 117.51535 * 224.95986 * 11 10 9 39 39 H 1.09001 * 117.51386 * 10.06078 * 11 10 9 40 40 H 1.09003 * 117.51324 * 349.80955 * 12 10 9 41 41 H 1.09003 * 117.51283 * 134.86315 * 12 10 9 42 42 H 1.09009 * 113.64453 * 220.48821 * 13 10 9 43 43 H 1.08997 * 113.72782 * 89.49596 * 13 10 9 44 44 H 1.08999 * 109.88662 * 120.70479 * 14 5 4 45 45 H 1.09001 * 109.88487 * 241.71418 * 14 5 4 46 46 H 1.00900 * 110.99705 * 37.49986 * 17 15 14 47 47 H 1.09004 * 109.47116 * 299.99867 * 18 17 15 48 48 H 1.08995 * 109.47213 * 59.99876 * 18 17 15 49 49 H 0.97007 * 119.99718 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99706 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0835 -0.8122 1.2002 5 7 3.4272 -1.2432 0.7731 6 6 4.4476 -1.5620 1.5937 7 8 5.5127 -1.9105 1.1299 8 6 4.2654 -1.4853 3.0877 9 6 3.5509 -2.7106 3.6846 10 6 4.9422 -3.3369 3.8451 11 6 5.3506 -4.5467 4.6783 12 6 5.5132 -4.5712 3.1560 13 6 5.5110 -1.9143 3.8829 14 6 3.4676 -1.2738 -0.6962 15 6 2.0863 -0.8076 -1.2024 16 1 2.1923 -0.1693 -2.0796 17 7 1.2246 -1.9601 -1.4976 18 6 1.4436 -2.4441 -2.8671 19 6 0.5449 -3.6244 -3.1325 20 8 -0.2047 -4.0228 -2.2661 21 7 0.5740 -4.2372 -4.3326 22 6 -0.2439 -5.3105 -4.5742 23 1 -0.9113 -5.6653 -3.8028 24 6 -0.2142 -5.9419 -5.8116 25 7 -0.9979 -6.9711 -6.0430 26 14 0.9397 -5.3278 -7.1461 27 1 2.2436 -6.0297 -7.0346 28 1 0.3439 -5.5991 -8.4790 29 1 1.1489 -3.8664 -6.9856 30 1 -0.3633 -1.0253 0.0696 31 1 -0.3634 0.5730 0.8530 32 1 -0.3632 0.4523 -0.9228 33 1 1.4524 -1.6785 1.3984 34 1 2.1515 -0.1807 2.0860 35 1 3.8457 -0.5338 3.4143 36 1 3.0513 -2.5071 4.6316 37 1 2.9140 -3.2353 2.9723 38 1 6.2555 -4.4614 5.2800 39 1 4.5541 -5.1531 5.1095 40 1 4.8237 -5.1938 2.5859 41 1 6.5247 -4.5019 2.7558 42 1 6.4433 -1.8014 3.3294 43 1 5.5586 -1.4875 4.8847 44 1 4.2427 -0.5994 -1.0600 45 1 3.6679 -2.2885 -1.0406 46 1 1.3669 -2.6994 -0.8257 47 1 1.2157 -1.6470 -3.5749 48 1 2.4842 -2.7468 -2.9835 49 1 1.1732 -3.9182 -5.0256 50 1 -0.9774 -7.4117 -6.9070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274250538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:33 Heat of formation + Delta-G solvation = -9.232014 kcal Electronic energy + Delta-G solvation = -29453.591169 eV Core-core repulsion = 25482.570199 eV Total energy + Delta-G solvation = -3971.020970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.98928 -39.52878 -38.35497 -37.55897 -34.64429 -33.93292 -33.71545 -32.46257 -31.66276 -29.36689 -26.65750 -26.48024 -26.04370 -24.80459 -23.68349 -22.59785 -22.33511 -19.98837 -19.75234 -19.41341 -18.51336 -18.28690 -17.27741 -16.48334 -16.00097 -15.87274 -15.67061 -15.36351 -15.23904 -14.88706 -14.53609 -14.03941 -14.00526 -13.63365 -13.59739 -13.12689 -13.05545 -12.74618 -12.64557 -12.49515 -12.43613 -12.08189 -12.01277 -11.99072 -11.88141 -11.76842 -11.64810 -11.40313 -11.17123 -10.90471 -10.77914 -10.60421 -10.57842 -10.28175 -10.08128 -9.98940 -9.75962 -9.58802 -8.84600 -8.62199 -8.23468 -8.17808 -6.32518 -3.84057 2.46555 2.75250 3.01740 3.06188 3.14514 3.55373 3.71759 3.94656 4.09233 4.09935 4.20875 4.27946 4.29150 4.35407 4.58227 4.66763 4.72474 4.81416 4.88689 5.06843 5.13488 5.14745 5.21617 5.29517 5.34682 5.44657 5.45777 5.46098 5.50707 5.55747 5.60214 5.63710 5.71904 5.74100 5.77653 5.79274 5.86701 5.90456 5.95757 5.97298 5.98170 6.07689 6.11585 6.51774 7.00618 7.33441 7.45666 7.56386 8.03411 8.12634 8.57840 8.93295 9.40781 9.80381 10.80558 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012939 B = 0.002655 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.553251 B =10544.306959 C =11552.200443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.092 4.092 3 H 0.084 0.916 4 C 0.101 3.899 5 N -0.615 5.615 6 C 0.547 3.453 7 O -0.535 6.535 8 C -0.130 4.130 9 C -0.084 4.084 10 C -0.161 4.161 11 C -0.168 4.168 12 C -0.142 4.142 13 C -0.081 4.081 14 C 0.076 3.924 15 C 0.078 3.922 16 H 0.099 0.901 17 N -0.650 5.650 18 C 0.045 3.955 19 C 0.450 3.550 20 O -0.565 6.565 21 N -0.590 5.590 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.881 5.881 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.269 1.269 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.353 0.647 47 H 0.089 0.911 48 H 0.045 0.955 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.298 15.686 17.906 26.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.112 4.112 3 H 0.102 0.898 4 C -0.022 4.022 5 N -0.349 5.349 6 C 0.336 3.664 7 O -0.412 6.412 8 C -0.151 4.151 9 C -0.121 4.121 10 C -0.161 4.161 11 C -0.205 4.205 12 C -0.179 4.179 13 C -0.119 4.119 14 C -0.049 4.049 15 C -0.033 4.033 16 H 0.117 0.883 17 N -0.282 5.282 18 C -0.087 4.087 19 C 0.236 3.764 20 O -0.447 6.447 21 N -0.229 5.229 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.173 0.827 47 H 0.108 0.892 48 H 0.063 0.937 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.796 15.393 17.960 26.001 hybrid contribution 1.713 -0.089 -1.249 2.122 sum 12.509 15.304 16.711 25.883 Atomic orbital electron populations 1.21493 0.92331 1.03620 1.01071 1.22427 0.97733 0.97965 0.93074 0.89763 1.22579 0.82843 0.98804 0.97976 1.48407 1.12538 1.67325 1.06615 1.19709 0.82591 0.76422 0.87705 1.90689 1.26161 1.46933 1.77376 1.22226 1.00682 1.00493 0.91679 1.22458 0.94723 0.94010 1.00944 1.22184 0.97164 0.90161 1.06560 1.22818 1.02956 1.00648 0.94063 1.22715 1.02245 0.98276 0.94629 1.22366 0.97315 0.92800 0.99382 1.22814 0.99561 1.02022 0.80470 1.22715 0.88380 0.93882 0.98349 0.88265 1.60127 1.54464 1.10302 1.03297 1.21769 0.97700 0.97726 0.91538 1.19663 0.87158 0.85933 0.83667 1.90564 1.42437 1.66739 1.44946 1.42208 1.38170 1.30015 1.12532 1.19422 1.18106 1.05063 1.00779 0.86284 1.25040 0.97470 0.96184 0.97448 1.69624 1.37763 1.20622 1.24083 0.86674 0.81385 0.78983 0.82362 1.19651 1.20157 1.19456 0.90478 0.93584 0.92140 0.90561 0.90678 0.88140 0.88596 0.90833 0.88821 0.88749 0.88760 0.88503 0.89990 0.89093 0.91202 0.91372 0.82691 0.89238 0.93668 0.79686 0.91597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.20 8.86 37.16 0.33 -0.87 16 2 C -0.09 -0.80 3.57 -88.35 -0.32 -1.12 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C 0.10 0.87 6.06 -2.41 -0.01 0.86 16 5 N -0.61 -6.73 3.32 -170.39 -0.57 -7.29 16 6 C 0.55 6.73 7.10 -10.99 -0.08 6.65 16 7 O -0.54 -8.55 16.16 5.56 0.09 -8.46 16 8 C -0.13 -1.16 3.46 -90.85 -0.31 -1.48 16 9 C -0.08 -0.72 7.69 -26.05 -0.20 -0.92 16 10 C -0.16 -1.55 2.77 -154.72 -0.43 -1.98 16 11 C -0.17 -1.45 10.53 -26.95 -0.28 -1.74 16 12 C -0.14 -1.52 10.53 -26.95 -0.28 -1.80 16 13 C -0.08 -0.73 7.48 -26.14 -0.20 -0.92 16 14 C 0.08 0.86 6.31 -3.07 -0.02 0.84 16 15 C 0.08 0.82 3.02 -65.88 -0.20 0.62 16 16 H 0.10 0.93 7.90 -51.93 -0.41 0.52 16 17 N -0.65 -9.01 4.52 -106.06 -0.48 -9.49 16 18 C 0.05 0.70 5.99 -4.98 -0.03 0.67 16 19 C 0.45 9.91 7.82 -10.98 -0.09 9.83 16 20 O -0.56 -14.72 15.78 5.55 0.09 -14.64 16 21 N -0.59 -13.86 5.09 -10.96 -0.06 -13.92 16 22 C -0.31 -8.58 10.16 -14.94 -0.15 -8.73 16 23 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.71 13.96 55.50 0.77 -24.93 16 26 Si 0.88 19.33 27.74 -169.99 -4.71 14.62 16 27 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 29 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 30 H 0.08 0.91 7.36 -51.93 -0.38 0.53 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.71 7.99 -51.93 -0.41 0.30 16 34 H 0.07 0.50 7.28 -51.93 -0.38 0.12 16 35 H 0.10 0.68 7.54 -51.93 -0.39 0.29 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.72 8.09 -51.92 -0.42 0.30 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 0.88 7.40 -51.92 -0.38 0.50 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.90 7.70 -51.93 -0.40 0.50 16 46 H 0.35 5.39 8.12 -39.29 -0.32 5.07 16 47 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 48 H 0.05 0.63 7.83 -51.93 -0.41 0.23 16 49 H 0.37 7.65 5.76 -40.82 -0.24 7.42 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 402.33 15.07 6.06 6.06 Total: -1.00 -33.68 402.33 -9.51 -43.20 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -8.35 Total: 13.89 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -2.37 Total: 0.96 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.33 Total: -55.63 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: 0.18 Total: -23.09 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.68 -9.51 -43.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274250538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.963 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds