Wall clock time and date at job start Tue Mar 31 2020 18:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09002 * 110.88471 * 2 1 4 4 C 1.55123 * 110.90304 * 124.08702 * 2 1 3 5 5 N 1.47432 * 104.72137 * 155.27719 * 4 2 1 6 6 C 1.34773 * 125.64848 * 155.81951 * 5 4 2 7 7 O 1.21279 * 120.00024 * 179.69421 * 6 5 4 8 8 C 1.50700 * 120.00157 * 359.68917 * 6 5 4 9 9 C 1.53890 * 113.58717 * 80.78618 * 8 6 5 10 10 C 1.53419 * 86.82533 * 89.71308 * 9 8 6 11 11 C 1.52460 * 128.60798 * 165.09850 * 10 9 8 12 12 C 1.52458 * 128.52230 * 245.01375 * 10 9 8 13 13 C 1.53255 * 87.71922 * 25.01939 * 10 9 8 14 14 C 1.47018 * 108.70105 * 335.55626 * 5 4 2 15 15 C 1.54324 * 107.27264 * 1.28288 * 14 5 4 16 16 H 1.08997 * 110.72225 * 140.55703 * 15 14 5 17 17 N 1.46900 * 110.72346 * 263.83060 * 15 14 5 18 18 C 1.46896 * 111.00081 * 273.54596 * 17 15 14 19 19 C 1.50705 * 109.46928 * 179.97438 * 18 17 15 20 20 O 1.21291 * 119.99983 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99784 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00045 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99722 * 359.97438 * 22 21 19 24 24 C 1.38943 * 119.99973 * 179.97438 * 22 21 19 25 25 N 1.31415 * 119.99943 * 179.97438 * 24 22 21 26 26 Si 1.86802 * 120.00156 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.47099 * 90.00205 * 26 24 22 28 28 H 1.48501 * 109.47258 * 209.99855 * 26 24 22 29 29 H 1.48502 * 109.47077 * 330.00129 * 26 24 22 30 30 H 1.08999 * 109.46985 * 183.88363 * 1 2 3 31 31 H 1.08996 * 109.47441 * 303.88761 * 1 2 3 32 32 H 1.09000 * 109.46590 * 63.88851 * 1 2 3 33 33 H 1.08998 * 110.50072 * 36.43727 * 4 2 1 34 34 H 1.08995 * 110.34782 * 274.03946 * 4 2 1 35 35 H 1.09002 * 112.83084 * 309.67042 * 8 6 5 36 36 H 1.08994 * 113.64879 * 204.18465 * 9 8 6 37 37 H 1.09008 * 113.64580 * 335.19169 * 9 8 6 38 38 H 1.09004 * 117.51535 * 224.95986 * 11 10 9 39 39 H 1.09001 * 117.51386 * 10.06078 * 11 10 9 40 40 H 1.09003 * 117.51324 * 349.80955 * 12 10 9 41 41 H 1.09003 * 117.51283 * 134.86315 * 12 10 9 42 42 H 1.09009 * 113.64453 * 220.48821 * 13 10 9 43 43 H 1.08997 * 113.72782 * 89.49596 * 13 10 9 44 44 H 1.08999 * 109.88662 * 120.70479 * 14 5 4 45 45 H 1.09001 * 109.88487 * 241.71418 * 14 5 4 46 46 H 1.00900 * 110.99705 * 37.49986 * 17 15 14 47 47 H 1.09004 * 109.47116 * 299.99867 * 18 17 15 48 48 H 1.08995 * 109.47213 * 59.99876 * 18 17 15 49 49 H 0.97007 * 119.99718 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99706 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0835 -0.8122 1.2002 5 7 3.4272 -1.2432 0.7731 6 6 4.4476 -1.5620 1.5937 7 8 5.5127 -1.9105 1.1299 8 6 4.2654 -1.4853 3.0877 9 6 3.5509 -2.7106 3.6846 10 6 4.9422 -3.3369 3.8451 11 6 5.3506 -4.5467 4.6783 12 6 5.5132 -4.5712 3.1560 13 6 5.5110 -1.9143 3.8829 14 6 3.4676 -1.2738 -0.6962 15 6 2.0863 -0.8076 -1.2024 16 1 2.1923 -0.1693 -2.0796 17 7 1.2246 -1.9601 -1.4976 18 6 1.4436 -2.4441 -2.8671 19 6 0.5449 -3.6244 -3.1325 20 8 -0.2047 -4.0228 -2.2661 21 7 0.5740 -4.2372 -4.3326 22 6 -0.2439 -5.3105 -4.5742 23 1 -0.9113 -5.6653 -3.8028 24 6 -0.2142 -5.9419 -5.8116 25 7 -0.9979 -6.9711 -6.0430 26 14 0.9397 -5.3278 -7.1461 27 1 2.2436 -6.0297 -7.0346 28 1 0.3439 -5.5991 -8.4790 29 1 1.1489 -3.8664 -6.9856 30 1 -0.3633 -1.0253 0.0696 31 1 -0.3634 0.5730 0.8530 32 1 -0.3632 0.4523 -0.9228 33 1 1.4524 -1.6785 1.3984 34 1 2.1515 -0.1807 2.0860 35 1 3.8457 -0.5338 3.4143 36 1 3.0513 -2.5071 4.6316 37 1 2.9140 -3.2353 2.9723 38 1 6.2555 -4.4614 5.2800 39 1 4.5541 -5.1531 5.1095 40 1 4.8237 -5.1938 2.5859 41 1 6.5247 -4.5019 2.7558 42 1 6.4433 -1.8014 3.3294 43 1 5.5586 -1.4875 4.8847 44 1 4.2427 -0.5994 -1.0600 45 1 3.6679 -2.2885 -1.0406 46 1 1.3669 -2.6994 -0.8257 47 1 1.2157 -1.6470 -3.5749 48 1 2.4842 -2.7468 -2.9835 49 1 1.1732 -3.9182 -5.0256 50 1 -0.9774 -7.4117 -6.9070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274250538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:32 Heat of formation + Delta-G solvation = -32.952726 kcal Electronic energy + Delta-G solvation = -29454.619776 eV Core-core repulsion = 25482.570199 eV Total energy + Delta-G solvation = -3972.049577 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.82241 -40.55894 -39.90280 -38.55179 -36.16526 -35.44377 -34.56663 -33.76478 -33.30463 -30.38971 -28.12953 -27.27668 -26.72908 -25.97553 -25.09654 -23.39201 -23.12387 -21.33478 -20.79503 -20.57724 -20.29923 -19.16038 -18.14534 -17.75697 -17.23012 -17.01057 -16.78270 -16.51016 -16.21447 -16.10970 -15.68922 -15.32131 -15.10816 -15.05157 -14.56553 -14.47039 -14.15794 -13.97726 -13.94469 -13.54874 -13.35310 -13.26259 -13.19632 -12.91018 -12.82098 -12.73858 -12.54563 -12.42756 -12.41403 -12.20945 -11.99851 -11.67988 -11.54729 -11.52731 -11.30229 -11.08041 -10.89171 -10.55633 -10.44012 -10.26019 -9.74423 -9.34797 -8.42652 -6.03332 1.28743 1.34041 1.42852 1.55677 1.92485 1.95471 2.21470 2.67573 2.81169 3.14002 3.28235 3.38563 3.48066 3.51891 3.56955 3.64449 3.81325 3.93301 4.01038 4.07439 4.12451 4.24771 4.34817 4.41518 4.48497 4.56019 4.60149 4.68801 4.70850 4.72040 4.76934 4.77895 4.82755 4.87284 4.93118 5.00074 5.08290 5.14359 5.21278 5.21622 5.24889 5.32396 5.34907 5.51506 5.73342 5.89008 6.01862 6.26841 6.48589 6.58218 6.86922 7.12665 7.38639 7.94987 8.75016 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012939 B = 0.002655 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.553251 B =10544.306959 C =11552.200443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.082 4.082 3 H 0.110 0.890 4 C 0.100 3.900 5 N -0.614 5.614 6 C 0.537 3.463 7 O -0.582 6.582 8 C -0.125 4.125 9 C -0.076 4.076 10 C -0.171 4.171 11 C -0.148 4.148 12 C -0.171 4.171 13 C -0.077 4.077 14 C 0.077 3.923 15 C 0.082 3.918 16 H 0.121 0.879 17 N -0.658 5.658 18 C 0.059 3.941 19 C 0.449 3.551 20 O -0.612 6.612 21 N -0.592 5.592 22 C -0.327 4.327 23 H 0.056 0.944 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.963 3.037 27 H -0.260 1.260 28 H -0.274 1.274 29 H -0.229 1.229 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.126 0.874 37 H 0.055 0.945 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.122 0.878 44 H 0.075 0.925 45 H 0.042 0.958 46 H 0.341 0.659 47 H 0.122 0.878 48 H 0.068 0.932 49 H 0.389 0.611 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.727 19.433 18.462 29.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.128 0.872 4 C -0.022 4.022 5 N -0.347 5.347 6 C 0.328 3.672 7 O -0.462 6.462 8 C -0.146 4.146 9 C -0.114 4.114 10 C -0.171 4.171 11 C -0.185 4.185 12 C -0.208 4.208 13 C -0.115 4.115 14 C -0.048 4.048 15 C -0.028 4.028 16 H 0.138 0.862 17 N -0.289 5.289 18 C -0.073 4.073 19 C 0.237 3.763 20 O -0.496 6.496 21 N -0.234 5.234 22 C -0.457 4.457 23 H 0.074 0.926 24 C -0.214 4.214 25 N -0.575 5.575 26 Si 0.783 3.217 27 H -0.185 1.185 28 H -0.199 1.199 29 H -0.153 1.153 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.124 0.876 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.140 0.860 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.160 0.840 47 H 0.140 0.860 48 H 0.086 0.914 49 H 0.225 0.775 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.209 19.184 18.531 29.334 hybrid contribution 1.192 -1.310 -1.314 2.205 sum 13.401 17.874 17.217 28.204 Atomic orbital electron populations 1.21413 0.92820 1.02006 1.01736 1.22439 0.97091 0.98808 0.91807 0.87188 1.22717 0.81304 0.98945 0.99251 1.48515 1.13134 1.66557 1.06451 1.20401 0.82069 0.75506 0.89271 1.90666 1.28095 1.49064 1.78419 1.22247 1.00951 1.02204 0.89165 1.22514 0.93815 0.93227 1.01797 1.22391 0.98283 0.90508 1.05936 1.22870 1.03579 0.99741 0.92295 1.22648 1.01400 1.00235 0.96520 1.22433 0.96165 0.92288 1.00592 1.22764 1.00287 1.00677 0.81089 1.22834 0.87212 0.92740 1.00046 0.86154 1.60174 1.55868 1.10748 1.02116 1.21700 0.96847 0.95459 0.93308 1.20959 0.86526 0.86523 0.82255 1.90544 1.44458 1.68297 1.46320 1.42047 1.38212 1.29291 1.13843 1.19000 1.19004 1.07510 1.00156 0.92616 1.26103 0.99326 0.95812 1.00131 1.69805 1.40051 1.22389 1.25288 0.85385 0.78263 0.80643 0.77367 1.18516 1.19947 1.15253 0.93410 0.91495 0.92691 0.91636 0.87631 0.84810 0.85554 0.92630 0.87578 0.87810 0.90337 0.89903 0.92384 0.86016 0.90679 0.93940 0.84041 0.86032 0.91390 0.77535 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 8.86 71.98 0.64 -1.38 16 2 C -0.08 -1.16 3.57 -9.33 -0.03 -1.19 16 3 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 4 C 0.10 1.47 6.06 86.93 0.53 2.00 16 5 N -0.61 -12.56 3.32 -811.37 -2.70 -15.26 16 6 C 0.54 12.80 7.10 87.66 0.62 13.42 16 7 O -0.58 -19.03 16.16 -3.03 -0.05 -19.08 16 8 C -0.12 -1.95 3.46 -10.94 -0.04 -1.99 16 9 C -0.08 -1.15 7.69 31.04 0.24 -0.91 16 10 C -0.17 -3.16 2.77 -52.32 -0.15 -3.30 16 11 C -0.15 -2.42 10.53 30.45 0.32 -2.10 16 12 C -0.17 -3.87 10.53 30.45 0.32 -3.55 16 13 C -0.08 -1.25 7.48 30.98 0.23 -1.02 16 14 C 0.08 1.64 6.31 86.73 0.55 2.19 16 15 C 0.08 1.51 3.02 46.10 0.14 1.65 16 16 H 0.12 1.76 7.90 -2.39 -0.02 1.74 16 17 N -0.66 -17.52 4.52 -489.46 -2.21 -19.73 16 18 C 0.06 1.72 5.99 85.56 0.51 2.23 16 19 C 0.45 19.96 7.82 87.66 0.69 20.65 16 20 O -0.61 -33.36 15.78 -3.06 -0.05 -33.41 16 21 N -0.59 -27.87 5.09 -306.98 -1.56 -29.43 16 22 C -0.33 -19.24 10.16 84.04 0.85 -18.39 16 23 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 24 C -0.02 -0.85 5.50 84.92 0.47 -0.38 16 25 N -0.93 -56.72 13.96 21.66 0.30 -56.42 16 26 Si 0.96 39.10 27.74 68.60 1.90 41.00 16 27 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 29 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 30 H 0.05 1.09 7.36 -2.39 -0.02 1.07 16 31 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 1.14 7.99 -2.39 -0.02 1.13 16 34 H 0.11 0.95 7.28 -2.39 -0.02 0.93 16 35 H 0.13 1.22 7.54 -2.39 -0.02 1.20 16 36 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.05 8.09 -2.38 -0.02 1.03 16 38 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.06 1.24 7.40 -2.38 -0.02 1.22 16 43 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.04 1.13 7.70 -2.39 -0.02 1.11 16 46 H 0.34 10.54 8.12 -89.69 -0.73 9.81 16 47 H 0.12 2.85 8.09 -2.38 -0.02 2.83 16 48 H 0.07 1.73 7.83 -2.39 -0.02 1.71 16 49 H 0.39 15.19 5.76 -92.70 -0.53 14.65 16 50 H 0.28 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -81.84 402.33 1.15 -80.69 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -0.37 Total: 43.70 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 5.89 Total: 7.93 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -6.17 Total: -120.84 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -0.10 Total: -52.49 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 1.90 Total: 41.00 kcal Total: -81.84 1.15 -80.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274250538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.740 kcal (2) G-P(sol) polarization free energy of solvation -81.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds