Wall clock time and date at job start Tue Mar 31 2020 18:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.30221 * 2 1 4 4 C 1.54389 * 110.34098 * 237.72003 * 2 1 3 5 5 N 1.48143 * 104.61746 * 264.98804 * 4 2 1 6 6 C 1.34780 * 127.83685 * 140.42172 * 5 4 2 7 7 O 1.21278 * 119.99757 * 179.97438 * 6 5 4 8 8 C 1.50693 * 120.00113 * 359.97438 * 6 5 4 9 9 C 1.53894 * 113.58621 * 277.66147 * 8 6 5 10 10 C 1.53260 * 86.88369 * 220.42511 * 9 8 6 11 11 C 1.52458 * 128.58438 * 165.11034 * 10 9 8 12 12 C 1.52460 * 128.58609 * 245.05743 * 10 9 8 13 13 C 1.53260 * 87.69108 * 25.08338 * 10 9 8 14 14 C 1.48422 * 104.33868 * 320.39471 * 5 4 2 15 15 C 1.54275 * 110.34696 * 122.17792 * 2 1 3 16 16 H 1.09000 * 110.34452 * 237.85013 * 15 2 1 17 17 N 1.46901 * 110.34075 * 0.02562 * 15 2 1 18 18 C 1.46902 * 110.99844 * 203.52256 * 17 15 2 19 19 C 1.50702 * 109.47027 * 179.97438 * 18 17 15 20 20 O 1.21293 * 120.00255 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99928 * 179.72353 * 19 18 17 22 22 C 1.37101 * 120.00327 * 180.27606 * 21 19 18 23 23 H 1.08001 * 119.99426 * 0.02562 * 22 21 19 24 24 C 1.38942 * 120.00412 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00005 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00325 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47047 * 89.99811 * 26 24 22 28 28 H 1.48501 * 109.47447 * 210.00167 * 26 24 22 29 29 H 1.48499 * 109.46902 * 330.00508 * 26 24 22 30 30 H 1.08999 * 109.46974 * 297.81992 * 1 2 3 31 31 H 1.08996 * 109.47202 * 57.82019 * 1 2 3 32 32 H 1.09004 * 109.46437 * 177.82176 * 1 2 3 33 33 H 1.08994 * 110.40832 * 23.77826 * 4 2 1 34 34 H 1.09009 * 110.40665 * 146.20887 * 4 2 1 35 35 H 1.09004 * 112.83200 * 48.87547 * 8 6 5 36 36 H 1.08996 * 113.64838 * 334.92332 * 9 8 6 37 37 H 1.08999 * 113.64771 * 105.93279 * 9 8 6 38 38 H 1.09004 * 117.50861 * 225.05475 * 11 10 9 39 39 H 1.08996 * 117.51715 * 10.15130 * 11 10 9 40 40 H 1.08994 * 117.51221 * 349.84355 * 12 10 9 41 41 H 1.09000 * 117.51095 * 134.91269 * 12 10 9 42 42 H 1.09005 * 113.64763 * 220.41921 * 13 10 9 43 43 H 1.09001 * 113.64649 * 89.40902 * 13 10 9 44 44 H 1.08998 * 110.44851 * 280.86773 * 14 5 4 45 45 H 1.09000 * 110.49106 * 158.35412 * 14 5 4 46 46 H 1.00902 * 111.00235 * 79.57493 * 17 15 2 47 47 H 1.09004 * 109.47131 * 60.00016 * 18 17 15 48 48 H 1.08994 * 109.47471 * 299.99766 * 18 17 15 49 49 H 0.97000 * 120.00317 * 0.28382 * 21 19 18 50 50 H 0.96996 * 120.00330 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7731 -1.2239 5 7 2.3141 -2.1444 -0.7208 6 6 2.0776 -3.3117 -1.3517 7 8 2.3369 -4.3613 -0.8023 8 6 1.4912 -3.3126 -2.7399 9 6 -0.0398 -3.1582 -2.7617 10 6 -0.0456 -4.2048 -3.8813 11 6 -1.2225 -5.0040 -4.4296 12 6 -0.4603 -4.0358 -5.3387 13 6 1.2828 -4.7229 -3.3195 14 6 2.8820 -1.9415 0.6354 15 6 2.0664 -0.7703 1.2243 16 1 2.7081 -0.1265 1.8258 17 7 0.9525 -1.2809 2.0346 18 6 1.3729 -1.5082 3.4237 19 6 0.2064 -2.0299 4.2226 20 8 -0.8692 -2.1964 3.6873 21 7 0.3600 -2.3172 5.5304 22 6 -0.6997 -2.7971 6.2559 23 1 -1.6574 -2.9454 5.7792 24 6 -0.5416 -3.0928 7.6042 25 7 0.6237 -2.9120 8.1843 26 14 -1.9856 -3.7461 8.5929 27 1 -2.0017 -5.2294 8.5245 28 1 -1.8510 -3.3172 10.0082 29 1 -3.2521 -3.2110 8.0317 30 1 -0.3633 0.4796 0.9089 31 1 -0.3633 0.5473 -0.8698 32 1 -0.3632 -1.0270 -0.0391 33 1 1.3223 -0.7887 -2.0199 34 1 2.9949 -0.3254 -1.5791 35 1 2.0089 -2.6343 -3.4182 36 1 -0.5262 -3.4948 -1.8461 37 1 -0.3753 -2.1723 -3.0832 38 1 -1.0735 -6.0714 -4.5934 39 1 -2.2225 -4.7122 -4.1089 40 1 -0.9592 -3.1072 -5.6158 41 1 0.1901 -4.4657 -6.1003 42 1 2.0077 -4.9911 -4.0881 43 1 1.1645 -5.4948 -2.5591 44 1 3.9369 -1.6753 0.5705 45 1 2.7519 -2.8380 1.2416 46 1 0.5676 -2.1218 1.6311 47 1 1.7188 -0.5696 3.8569 48 1 2.1825 -2.2377 3.4435 49 1 1.2202 -2.1843 5.9584 50 1 0.7340 -3.1180 9.1257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274250539.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:36 Heat of formation + Delta-G solvation = -13.229922 kcal Electronic energy + Delta-G solvation = -29434.788983 eV Core-core repulsion = 25463.594651 eV Total energy + Delta-G solvation = -3971.194332 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81408 -39.46569 -38.20463 -37.60879 -34.58340 -33.88225 -33.67190 -32.20458 -31.18298 -29.17053 -26.89769 -26.04466 -25.98500 -24.87828 -23.79160 -22.78729 -22.40726 -19.72069 -19.47494 -19.07386 -18.60153 -17.90167 -17.41592 -16.43984 -16.08041 -15.73662 -15.65521 -15.39407 -15.00850 -14.54469 -14.46604 -14.14241 -13.87499 -13.65413 -13.54664 -13.23837 -12.77437 -12.73517 -12.54349 -12.32738 -12.24545 -12.08007 -11.84960 -11.78052 -11.67342 -11.65826 -11.50455 -11.15868 -11.00201 -10.86413 -10.71727 -10.61441 -10.55560 -10.37730 -10.19798 -9.99751 -9.70094 -9.48874 -8.94732 -8.42409 -8.01349 -7.93304 -6.39651 -3.80319 2.51676 2.78197 3.19607 3.27979 3.34011 3.45588 3.93252 4.05077 4.07753 4.18207 4.31723 4.35942 4.39278 4.44496 4.55236 4.63637 4.89549 4.93877 5.01265 5.06195 5.17540 5.25523 5.30636 5.32755 5.33475 5.38952 5.44309 5.47533 5.54908 5.55806 5.57493 5.70655 5.71133 5.72886 5.83965 5.84564 5.93723 5.95569 5.98322 6.09557 6.15095 6.25108 6.31249 6.63310 7.22406 7.44115 7.57266 7.62103 8.07852 8.08548 8.63400 9.20076 9.56550 10.08000 10.78169 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.002518 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.244837 B =11117.220316 C =12044.818172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.095 4.095 3 H 0.086 0.914 4 C 0.102 3.898 5 N -0.618 5.618 6 C 0.543 3.457 7 O -0.538 6.538 8 C -0.126 4.126 9 C -0.079 4.079 10 C -0.164 4.164 11 C -0.164 4.164 12 C -0.151 4.151 13 C -0.076 4.076 14 C 0.071 3.929 15 C 0.076 3.924 16 H 0.094 0.906 17 N -0.651 5.651 18 C 0.047 3.953 19 C 0.442 3.558 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.083 0.917 46 H 0.352 0.648 47 H 0.087 0.913 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.497 4.941 -24.764 25.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.115 4.115 3 H 0.104 0.896 4 C -0.021 4.021 5 N -0.353 5.353 6 C 0.332 3.668 7 O -0.415 6.415 8 C -0.147 4.147 9 C -0.116 4.116 10 C -0.164 4.164 11 C -0.201 4.201 12 C -0.188 4.188 13 C -0.113 4.113 14 C -0.053 4.053 15 C -0.036 4.036 16 H 0.112 0.888 17 N -0.283 5.283 18 C -0.086 4.086 19 C 0.227 3.773 20 O -0.467 6.467 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.173 0.827 47 H 0.105 0.895 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.672 4.734 -24.530 25.415 hybrid contribution 0.600 -0.940 0.812 1.379 sum 5.272 3.795 -23.718 24.591 Atomic orbital electron populations 1.21507 0.92888 1.02215 1.01453 1.22157 0.98118 0.98569 0.92688 0.89604 1.22576 1.00468 0.81629 0.97454 1.48992 1.63160 1.05688 1.17439 1.20144 0.77416 0.81905 0.87357 1.90723 1.52487 1.30618 1.67643 1.22563 0.97585 1.00869 0.93712 1.22404 0.92856 0.98420 0.97969 1.22142 0.97297 1.01519 0.95436 1.22807 0.96230 0.97628 1.03458 1.22788 1.03078 1.01434 0.91523 1.22397 0.94093 0.95349 0.99481 1.23241 0.97779 1.00200 0.84110 1.22605 0.91633 0.95032 0.94368 0.88788 1.60313 1.29059 1.38116 1.00814 1.21750 0.96405 1.00694 0.89735 1.19786 0.89632 0.84658 0.83211 1.90523 1.27853 1.57918 1.70403 1.41861 1.13420 1.57148 1.07648 1.19692 0.92515 1.39153 0.91401 0.87966 1.25257 0.97894 0.97785 0.97045 1.69611 1.23121 1.48876 1.12764 0.85860 0.81034 0.78965 0.78451 1.20431 1.20927 1.19411 0.90793 0.94088 0.92613 0.90053 0.91208 0.87130 0.88920 0.90570 0.88615 0.88520 0.88583 0.88646 0.91036 0.88172 0.90944 0.89856 0.82714 0.89488 0.93876 0.77480 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 8.10 37.16 0.30 -1.05 16 2 C -0.10 -0.88 3.66 -89.22 -0.33 -1.21 16 3 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 4 C 0.10 0.82 6.46 -2.41 -0.02 0.81 16 5 N -0.62 -6.95 3.32 -169.08 -0.56 -7.51 16 6 C 0.54 7.08 7.44 -10.99 -0.08 6.99 16 7 O -0.54 -9.35 16.17 5.56 0.09 -9.26 16 8 C -0.13 -1.21 3.09 -90.85 -0.28 -1.49 16 9 C -0.08 -0.72 7.43 -26.13 -0.19 -0.92 16 10 C -0.16 -1.42 3.08 -154.80 -0.48 -1.90 16 11 C -0.16 -1.31 10.53 -26.94 -0.28 -1.60 16 12 C -0.15 -1.05 10.53 -26.94 -0.28 -1.34 16 13 C -0.08 -0.75 7.42 -26.13 -0.19 -0.94 16 14 C 0.07 0.83 6.49 -2.26 -0.01 0.82 16 15 C 0.08 0.86 3.35 -66.32 -0.22 0.63 16 16 H 0.09 0.95 7.84 -51.93 -0.41 0.54 16 17 N -0.65 -10.13 4.13 -106.51 -0.44 -10.57 16 18 C 0.05 0.81 6.01 -4.97 -0.03 0.78 16 19 C 0.44 10.52 7.82 -10.98 -0.09 10.43 16 20 O -0.58 -15.97 15.78 5.55 0.09 -15.88 16 21 N -0.56 -14.49 5.29 -10.96 -0.06 -14.55 16 22 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.86 13.05 55.50 0.72 -24.14 16 26 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 30 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.72 7.52 -51.93 -0.39 0.33 16 33 H 0.08 0.57 6.96 -51.93 -0.36 0.21 16 34 H 0.07 0.45 8.14 -51.92 -0.42 0.02 16 35 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.10 1.20 7.42 -51.93 -0.39 0.82 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.21 7.60 -51.93 -0.39 0.82 16 46 H 0.35 6.23 7.70 -39.29 -0.30 5.93 16 47 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 48 H 0.04 0.70 7.96 -51.93 -0.41 0.29 16 49 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 50 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 405.16 15.07 6.11 6.11 Total: -1.00 -33.35 405.16 -9.89 -43.24 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -8.39 Total: 14.26 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.43 Total: 1.94 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: -0.33 Total: -56.77 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: 0.18 Total: -25.14 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.35 -9.89 -43.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274250539.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.008 kcal (2) G-P(sol) polarization free energy of solvation -33.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds