Wall clock time and date at job start Tue Mar 31 2020 18:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.30221 * 2 1 4 4 C 1.54389 * 110.34098 * 237.72003 * 2 1 3 5 5 N 1.48143 * 104.61746 * 264.98804 * 4 2 1 6 6 C 1.34780 * 127.83685 * 140.42172 * 5 4 2 7 7 O 1.21278 * 119.99757 * 179.97438 * 6 5 4 8 8 C 1.50693 * 120.00113 * 359.97438 * 6 5 4 9 9 C 1.53894 * 113.58621 * 277.66147 * 8 6 5 10 10 C 1.53260 * 86.88369 * 220.42511 * 9 8 6 11 11 C 1.52458 * 128.58438 * 165.11034 * 10 9 8 12 12 C 1.52460 * 128.58609 * 245.05743 * 10 9 8 13 13 C 1.53260 * 87.69108 * 25.08338 * 10 9 8 14 14 C 1.48422 * 104.33868 * 320.39471 * 5 4 2 15 15 C 1.54275 * 110.34696 * 122.17792 * 2 1 3 16 16 H 1.09000 * 110.34452 * 237.85013 * 15 2 1 17 17 N 1.46901 * 110.34075 * 0.02562 * 15 2 1 18 18 C 1.46902 * 110.99844 * 203.52256 * 17 15 2 19 19 C 1.50702 * 109.47027 * 179.97438 * 18 17 15 20 20 O 1.21293 * 120.00255 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99928 * 179.72353 * 19 18 17 22 22 C 1.37101 * 120.00327 * 180.27606 * 21 19 18 23 23 H 1.08001 * 119.99426 * 0.02562 * 22 21 19 24 24 C 1.38942 * 120.00412 * 180.02562 * 22 21 19 25 25 N 1.31414 * 120.00005 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00325 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47047 * 89.99811 * 26 24 22 28 28 H 1.48501 * 109.47447 * 210.00167 * 26 24 22 29 29 H 1.48499 * 109.46902 * 330.00508 * 26 24 22 30 30 H 1.08999 * 109.46974 * 297.81992 * 1 2 3 31 31 H 1.08996 * 109.47202 * 57.82019 * 1 2 3 32 32 H 1.09004 * 109.46437 * 177.82176 * 1 2 3 33 33 H 1.08994 * 110.40832 * 23.77826 * 4 2 1 34 34 H 1.09009 * 110.40665 * 146.20887 * 4 2 1 35 35 H 1.09004 * 112.83200 * 48.87547 * 8 6 5 36 36 H 1.08996 * 113.64838 * 334.92332 * 9 8 6 37 37 H 1.08999 * 113.64771 * 105.93279 * 9 8 6 38 38 H 1.09004 * 117.50861 * 225.05475 * 11 10 9 39 39 H 1.08996 * 117.51715 * 10.15130 * 11 10 9 40 40 H 1.08994 * 117.51221 * 349.84355 * 12 10 9 41 41 H 1.09000 * 117.51095 * 134.91269 * 12 10 9 42 42 H 1.09005 * 113.64763 * 220.41921 * 13 10 9 43 43 H 1.09001 * 113.64649 * 89.40902 * 13 10 9 44 44 H 1.08998 * 110.44851 * 280.86773 * 14 5 4 45 45 H 1.09000 * 110.49106 * 158.35412 * 14 5 4 46 46 H 1.00902 * 111.00235 * 79.57493 * 17 15 2 47 47 H 1.09004 * 109.47131 * 60.00016 * 18 17 15 48 48 H 1.08994 * 109.47471 * 299.99766 * 18 17 15 49 49 H 0.97000 * 120.00317 * 0.28382 * 21 19 18 50 50 H 0.96996 * 120.00330 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7731 -1.2239 5 7 2.3141 -2.1444 -0.7208 6 6 2.0776 -3.3117 -1.3517 7 8 2.3369 -4.3613 -0.8023 8 6 1.4912 -3.3126 -2.7399 9 6 -0.0398 -3.1582 -2.7617 10 6 -0.0456 -4.2048 -3.8813 11 6 -1.2225 -5.0040 -4.4296 12 6 -0.4603 -4.0358 -5.3387 13 6 1.2828 -4.7229 -3.3195 14 6 2.8820 -1.9415 0.6354 15 6 2.0664 -0.7703 1.2243 16 1 2.7081 -0.1265 1.8258 17 7 0.9525 -1.2809 2.0346 18 6 1.3729 -1.5082 3.4237 19 6 0.2064 -2.0299 4.2226 20 8 -0.8692 -2.1964 3.6873 21 7 0.3600 -2.3172 5.5304 22 6 -0.6997 -2.7971 6.2559 23 1 -1.6574 -2.9454 5.7792 24 6 -0.5416 -3.0928 7.6042 25 7 0.6237 -2.9120 8.1843 26 14 -1.9856 -3.7461 8.5929 27 1 -2.0017 -5.2294 8.5245 28 1 -1.8510 -3.3172 10.0082 29 1 -3.2521 -3.2110 8.0317 30 1 -0.3633 0.4796 0.9089 31 1 -0.3633 0.5473 -0.8698 32 1 -0.3632 -1.0270 -0.0391 33 1 1.3223 -0.7887 -2.0199 34 1 2.9949 -0.3254 -1.5791 35 1 2.0089 -2.6343 -3.4182 36 1 -0.5262 -3.4948 -1.8461 37 1 -0.3753 -2.1723 -3.0832 38 1 -1.0735 -6.0714 -4.5934 39 1 -2.2225 -4.7122 -4.1089 40 1 -0.9592 -3.1072 -5.6158 41 1 0.1901 -4.4657 -6.1003 42 1 2.0077 -4.9911 -4.0881 43 1 1.1645 -5.4948 -2.5591 44 1 3.9369 -1.6753 0.5705 45 1 2.7519 -2.8380 1.2416 46 1 0.5676 -2.1218 1.6311 47 1 1.7188 -0.5696 3.8569 48 1 2.1825 -2.2377 3.4435 49 1 1.2202 -2.1843 5.9584 50 1 0.7340 -3.1180 9.1257 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274250539.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:35 Heat of formation + Delta-G solvation = -35.585693 kcal Electronic energy + Delta-G solvation = -29435.758402 eV Core-core repulsion = 25463.594651 eV Total energy + Delta-G solvation = -3972.163751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68640 -40.46050 -39.84157 -38.70361 -36.16400 -35.44629 -34.52211 -33.34515 -33.07490 -30.25981 -28.19010 -27.16160 -26.77999 -26.10325 -25.22487 -23.45249 -23.18638 -21.19766 -20.63076 -20.12512 -19.89777 -19.32786 -18.37061 -17.70771 -17.42853 -16.76112 -16.70916 -16.39069 -16.16625 -16.02734 -15.93867 -15.34950 -15.30757 -14.90957 -14.55281 -14.33021 -14.06034 -13.63069 -13.59319 -13.54381 -13.31043 -13.15368 -13.13072 -13.06560 -12.86406 -12.71855 -12.47377 -12.44994 -12.32503 -12.14658 -12.02639 -11.74924 -11.53854 -11.51519 -11.32581 -11.26771 -10.78022 -10.53156 -10.37941 -10.04370 -9.87897 -9.23297 -8.49248 -5.98130 1.35454 1.38901 1.52003 1.54698 1.92728 2.02854 2.26856 2.81700 2.89386 3.17680 3.35786 3.37715 3.49673 3.60534 3.64248 3.67752 3.88902 3.91470 4.13784 4.15504 4.24111 4.33271 4.36156 4.36863 4.47278 4.53899 4.61392 4.68434 4.70979 4.73920 4.78230 4.79270 4.80915 4.86477 4.97418 4.98842 5.02210 5.14063 5.21402 5.25345 5.29064 5.36191 5.37889 5.41463 5.69695 5.90041 6.11575 6.26074 6.55615 6.57575 7.09931 7.11676 7.53346 8.08978 8.68258 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.002518 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.244837 B =11117.220316 C =12044.818172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.088 4.088 3 H 0.118 0.882 4 C 0.103 3.897 5 N -0.618 5.618 6 C 0.532 3.468 7 O -0.597 6.597 8 C -0.114 4.114 9 C -0.076 4.076 10 C -0.173 4.173 11 C -0.178 4.178 12 C -0.127 4.127 13 C -0.082 4.082 14 C 0.071 3.929 15 C 0.075 3.925 16 H 0.117 0.883 17 N -0.659 5.659 18 C 0.062 3.938 19 C 0.437 3.563 20 O -0.624 6.624 21 N -0.574 5.574 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.993 3.007 27 H -0.273 1.273 28 H -0.268 1.268 29 H -0.273 1.273 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.027 0.973 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.144 0.856 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.045 0.955 46 H 0.335 0.665 47 H 0.114 0.886 48 H 0.057 0.943 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.516 7.225 -26.758 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.108 4.108 3 H 0.136 0.864 4 C -0.019 4.019 5 N -0.351 5.351 6 C 0.323 3.677 7 O -0.478 6.478 8 C -0.135 4.135 9 C -0.113 4.113 10 C -0.173 4.173 11 C -0.215 4.215 12 C -0.163 4.163 13 C -0.120 4.120 14 C -0.054 4.054 15 C -0.036 4.036 16 H 0.135 0.865 17 N -0.289 5.289 18 C -0.070 4.070 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.211 5.211 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.198 1.198 28 H -0.192 1.192 29 H -0.197 1.197 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.046 0.954 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.162 0.838 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.116 0.884 45 H 0.064 0.936 46 H 0.154 0.846 47 H 0.132 0.868 48 H 0.075 0.925 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.726 7.079 -26.531 28.050 hybrid contribution 0.278 -1.640 1.418 2.186 sum 6.004 5.439 -25.114 26.388 Atomic orbital electron populations 1.21428 0.94507 1.00420 1.01232 1.22202 0.96586 1.00080 0.91905 0.86351 1.22837 1.02552 0.79309 0.97167 1.49122 1.62071 1.06703 1.17201 1.20838 0.76787 0.81553 0.88533 1.90691 1.55062 1.32786 1.69218 1.22637 0.97684 1.01220 0.91976 1.22308 0.92353 0.99696 0.96992 1.22112 0.96816 1.01590 0.96826 1.22899 0.96109 0.98057 1.04455 1.22899 1.01843 1.01404 0.90179 1.22331 0.95586 0.94940 0.99136 1.23226 0.99301 0.98698 0.84167 1.22817 0.90681 0.95112 0.95028 0.86548 1.60378 1.31185 1.37084 1.00251 1.21622 0.93502 1.01807 0.90112 1.20926 0.90853 0.82963 0.82835 1.90489 1.30226 1.59236 1.71122 1.41937 1.13059 1.57689 1.08414 1.19642 0.92601 1.41585 0.92541 0.90537 1.26048 1.00596 0.97323 0.97346 1.69669 1.24364 1.48709 1.13342 0.84933 0.77603 0.78427 0.77402 1.19806 1.19225 1.19746 0.93542 0.91496 0.95426 0.88417 0.87894 0.83817 0.92094 0.88264 0.88691 0.88571 0.87008 0.87357 0.89687 0.91591 0.88435 0.93593 0.84642 0.86822 0.92535 0.76969 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.10 71.98 0.58 -1.85 16 2 C -0.09 -1.34 3.66 -9.89 -0.04 -1.38 16 3 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 4 C 0.10 1.27 6.46 86.53 0.56 1.83 16 5 N -0.62 -13.16 3.32 -807.25 -2.68 -15.84 16 6 C 0.53 14.07 7.44 87.65 0.65 14.72 16 7 O -0.60 -22.18 16.17 -3.02 -0.05 -22.23 16 8 C -0.11 -2.07 3.09 -10.94 -0.03 -2.11 16 9 C -0.08 -1.34 7.43 30.98 0.23 -1.11 16 10 C -0.17 -2.85 3.08 -52.37 -0.16 -3.01 16 11 C -0.18 -2.73 10.53 30.46 0.32 -2.41 16 12 C -0.13 -1.42 10.53 30.46 0.32 -1.10 16 13 C -0.08 -1.64 7.42 30.98 0.23 -1.41 16 14 C 0.07 1.59 6.49 86.48 0.56 2.15 16 15 C 0.07 1.55 3.35 45.82 0.15 1.70 16 16 H 0.12 1.94 7.84 -2.39 -0.02 1.92 16 17 N -0.66 -20.65 4.13 -490.90 -2.03 -22.67 16 18 C 0.06 2.16 6.01 85.56 0.51 2.67 16 19 C 0.44 21.54 7.82 87.66 0.69 22.22 16 20 O -0.62 -35.93 15.78 -3.07 -0.05 -35.98 16 21 N -0.57 -30.45 5.29 -306.98 -1.62 -32.07 16 22 C -0.33 -19.59 9.68 84.04 0.81 -18.78 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 25 N -0.92 -50.75 13.05 21.66 0.28 -50.46 16 26 Si 0.99 44.13 29.55 68.60 2.03 46.16 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 29 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 30 H 0.05 1.21 7.84 -2.39 -0.02 1.20 16 31 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 32 H 0.03 0.71 7.52 -2.39 -0.02 0.69 16 33 H 0.10 0.94 6.96 -2.39 -0.02 0.92 16 34 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 35 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.06 1.46 8.09 -2.39 -0.02 1.44 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.07 1.76 7.42 -2.39 -0.02 1.74 16 44 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 1.39 7.60 -2.39 -0.02 1.37 16 46 H 0.34 12.51 7.70 -89.69 -0.69 11.82 16 47 H 0.11 3.39 8.07 -2.38 -0.02 3.37 16 48 H 0.06 1.84 7.96 -2.39 -0.02 1.82 16 49 H 0.40 19.91 7.90 -92.71 -0.73 19.17 16 50 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -78.20 405.16 1.27 -76.93 By element: Atomic # 1 Polarization: 44.77 SS G_CDS: -0.47 Total: 44.30 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 5.86 Total: 11.87 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -6.05 Total: -121.05 kcal Atomic # 8 Polarization: -58.12 SS G_CDS: -0.10 Total: -58.21 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -78.20 1.27 -76.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274250539.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.342 kcal (2) G-P(sol) polarization free energy of solvation -78.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds