Wall clock time and date at job start Tue Mar 31 2020 19:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46375 * 2 1 4 4 C 1.53004 * 109.47374 * 119.99801 * 2 1 3 5 5 C 1.52993 * 109.47091 * 185.00380 * 4 2 1 6 6 N 1.46494 * 109.47368 * 180.02562 * 5 4 2 7 7 C 1.34774 * 120.00638 * 180.02562 * 6 5 4 8 8 O 1.21654 * 119.99642 * 5.07707 * 7 6 5 9 9 C 1.47081 * 120.00509 * 185.08272 * 7 6 5 10 10 C 1.39337 * 120.58875 * 174.12145 * 9 7 6 11 11 C 1.39469 * 118.95903 * 179.72562 * 10 9 7 12 12 C 1.35751 * 120.13140 * 359.97438 * 11 10 9 13 13 N 1.35438 * 121.23413 * 0.02562 * 12 11 10 14 14 C 1.46501 * 119.47419 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46971 * 0.02562 * 14 13 12 16 16 C 1.53005 * 109.46808 * 119.99826 * 14 13 12 17 17 C 1.52995 * 109.47274 * 240.00033 * 14 13 12 18 18 C 1.34658 * 121.05320 * 0.02562 * 13 12 11 19 19 O 1.21879 * 120.10208 * 180.02562 * 18 13 12 20 20 N 1.46500 * 109.47215 * 240.00072 * 2 1 3 21 21 C 1.36936 * 119.99830 * 84.99318 * 20 2 1 22 22 H 1.07994 * 120.00372 * 0.02562 * 21 20 2 23 23 C 1.38812 * 119.99869 * 180.02562 * 21 20 2 24 24 N 1.31617 * 120.00145 * 180.02562 * 23 21 20 25 25 Si 1.86806 * 120.00015 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.46750 * 90.00169 * 25 23 21 27 27 H 1.48501 * 109.47121 * 209.99933 * 25 23 21 28 28 H 1.48496 * 109.47001 * 330.00189 * 25 23 21 29 29 H 1.09001 * 109.47073 * 299.99682 * 1 2 3 30 30 H 1.08993 * 109.47252 * 60.00514 * 1 2 3 31 31 H 1.09002 * 109.46375 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46799 * 65.00381 * 4 2 1 33 33 H 1.08996 * 109.46850 * 305.00320 * 4 2 1 34 34 H 1.08999 * 109.47293 * 59.99845 * 5 4 2 35 35 H 1.09008 * 109.47042 * 299.99951 * 5 4 2 36 36 H 0.97001 * 119.99570 * 359.97438 * 6 5 4 37 37 H 1.08005 * 120.51781 * 359.74511 * 10 9 7 38 38 H 1.08003 * 119.93288 * 180.02562 * 11 10 9 39 39 H 1.08011 * 119.38319 * 180.02562 * 12 11 10 40 40 H 1.08999 * 109.47328 * 59.99488 * 15 14 13 41 41 H 1.08999 * 109.46680 * 179.97438 * 15 14 13 42 42 H 1.09003 * 109.46821 * 299.99377 * 15 14 13 43 43 H 1.08999 * 109.46940 * 59.99908 * 16 14 13 44 44 H 1.08994 * 109.46771 * 180.02562 * 16 14 13 45 45 H 1.08999 * 109.47170 * 300.00315 * 16 14 13 46 46 H 1.08995 * 109.47162 * 60.00054 * 17 14 13 47 47 H 1.08999 * 109.47378 * 180.02562 * 17 14 13 48 48 H 1.09005 * 109.47097 * 299.99984 * 17 14 13 49 49 H 0.96996 * 119.99992 * 264.99837 * 20 2 1 50 50 H 0.97007 * 120.00166 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.6131 1.3137 6 7 4.0534 -1.3042 2.5095 7 6 5.3742 -1.3395 2.7752 8 8 6.1524 -0.7207 2.0742 9 6 5.8748 -2.1264 3.9125 10 6 7.2440 -2.2712 4.1265 11 6 7.6813 -3.0200 5.2189 12 6 6.7800 -3.5947 6.0558 13 7 5.4477 -3.4581 5.8540 14 6 4.5092 -4.0944 6.7816 15 6 5.2902 -4.8366 7.8681 16 6 3.6275 -3.0245 7.4288 17 6 3.6299 -5.0861 6.0173 18 6 4.9720 -2.7468 4.8143 19 8 3.7696 -2.6348 4.6494 20 7 2.0184 -0.6906 -1.1962 21 6 2.1490 -0.0074 -2.3758 22 1 1.8925 1.0405 -2.4242 23 6 2.6113 -0.6619 -3.5093 24 7 2.7373 -0.0052 -4.6430 25 14 3.0544 -2.4747 -3.4257 26 1 1.8565 -3.2923 -3.7453 27 1 4.1296 -2.7673 -4.4074 28 1 3.5292 -2.8057 -2.0582 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.7518 -1.7714 1.2056 33 1 1.6055 -0.2617 2.1369 34 1 3.8532 0.4371 1.3573 35 1 3.9995 -1.0727 0.4259 36 1 3.4260 -1.7357 3.1105 37 1 7.9555 -1.8106 3.4571 38 1 8.7390 -3.1421 5.3999 39 1 7.1320 -4.1716 6.8983 40 1 5.9164 -4.1298 8.4125 41 1 4.5919 -5.3096 8.5585 42 1 5.9186 -5.5988 7.4073 43 1 3.0712 -2.4954 6.6551 44 1 2.9295 -3.4979 8.1193 45 1 4.2539 -2.3180 7.9733 46 1 4.2581 -5.8483 5.5563 47 1 2.9313 -5.5592 6.7074 48 1 3.0736 -4.5570 5.2436 49 1 2.2491 -1.6317 -1.1526 50 1 3.0600 -0.4627 -5.4352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274797484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:12 Heat of formation + Delta-G solvation = -23.150682 kcal Electronic energy + Delta-G solvation = -29612.929678 eV Core-core repulsion = 25641.305149 eV Total energy + Delta-G solvation = -3971.624528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.23653 -39.32844 -37.56728 -36.97269 -36.46351 -34.13121 -32.56072 -32.09073 -30.63139 -29.64995 -28.59630 -27.92809 -27.86134 -25.05330 -23.98395 -23.38937 -22.29943 -21.20951 -20.34645 -19.74211 -18.15613 -17.58044 -17.45707 -17.14283 -16.31990 -16.15044 -15.38551 -15.27919 -14.83932 -14.79425 -14.44354 -14.33373 -14.08298 -13.89086 -13.38909 -13.23684 -13.09874 -12.84128 -12.72183 -12.59575 -12.56958 -12.45670 -12.37790 -12.04849 -12.03430 -11.79395 -11.72203 -11.67221 -11.05919 -10.93227 -10.66360 -10.52163 -10.35673 -10.30599 -10.05308 -9.92538 -9.64581 -9.47632 -8.83749 -8.63532 -8.32964 -7.15667 -5.66298 -3.00792 0.13204 1.44760 2.01900 2.72590 3.46726 3.50901 3.53129 3.54075 3.67357 3.85905 3.99684 4.18266 4.29474 4.44083 4.56176 4.69761 4.75051 4.83068 4.89809 4.90894 5.13155 5.16581 5.19048 5.31738 5.32986 5.33545 5.40732 5.54449 5.62389 5.66241 5.71461 5.77575 5.81024 5.82113 5.87118 6.07928 6.15194 6.22027 6.41001 6.42083 6.53850 6.59231 6.66740 6.90904 6.91991 7.09623 7.54085 8.02137 8.10742 8.53027 8.62174 9.31924 10.04770 10.24848 11.52375 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015608 B = 0.002739 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.569145 B =10221.451359 C =10825.606506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.180 3.820 3 H 0.058 0.942 4 C -0.133 4.133 5 C 0.120 3.880 6 N -0.716 5.716 7 C 0.569 3.431 8 O -0.550 6.550 9 C -0.270 4.270 10 C 0.054 3.946 11 C -0.239 4.239 12 C 0.147 3.853 13 N -0.481 5.481 14 C 0.144 3.856 15 C -0.165 4.165 16 C -0.165 4.165 17 C -0.165 4.165 18 C 0.533 3.467 19 O -0.538 6.538 20 N -0.748 5.748 21 C -0.237 4.237 22 H 0.090 0.910 23 C 0.003 3.997 24 N -0.936 5.936 25 Si 0.882 3.118 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.412 0.588 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.171 0.829 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.089 0.911 49 H 0.360 0.640 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.720 -12.225 33.139 36.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.070 3.930 3 H 0.076 0.924 4 C -0.172 4.172 5 C -0.004 4.004 6 N -0.376 5.376 7 C 0.355 3.645 8 O -0.430 6.430 9 C -0.277 4.277 10 C 0.031 3.969 11 C -0.262 4.262 12 C 0.017 3.983 13 N -0.190 5.190 14 C 0.062 3.938 15 C -0.222 4.222 16 C -0.222 4.222 17 C -0.223 4.223 18 C 0.336 3.664 19 O -0.420 6.420 20 N -0.391 5.391 21 C -0.367 4.367 22 H 0.108 0.892 23 C -0.192 4.192 24 N -0.584 5.584 25 Si 0.713 3.287 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.257 0.743 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.188 0.812 40 H 0.088 0.912 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.108 0.892 49 H 0.193 0.807 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.377 -11.584 32.396 35.187 hybrid contribution 0.266 -1.608 0.200 1.642 sum 7.642 -13.192 32.596 35.985 Atomic orbital electron populations 1.22385 0.98674 1.00820 1.00430 1.20137 0.91986 0.95862 0.85028 0.92426 1.22067 0.94172 1.01597 0.99384 1.21414 0.94254 0.97519 0.87169 1.46608 1.07556 1.56002 1.27407 1.17421 0.83020 0.80759 0.83292 1.90810 1.56478 1.45062 1.50627 1.21169 0.94182 1.10452 1.01870 1.22069 0.94839 0.87351 0.92633 1.20706 1.00531 1.06457 0.98487 1.22332 0.82617 0.94810 0.98509 1.45704 1.06576 1.42224 1.24474 1.21076 0.89683 0.94092 0.88953 1.22319 1.01310 1.00579 0.98004 1.22247 0.99903 0.98238 1.01833 1.22252 0.99937 0.98195 1.01913 1.16952 0.89175 0.79583 0.80702 1.90558 1.15252 1.62888 1.73315 1.42833 1.79647 1.09449 1.07218 1.19079 1.36538 0.95581 0.85541 0.89172 1.24644 1.01571 0.97363 0.95619 1.69701 1.53044 1.35457 1.00228 0.86575 0.77992 0.87088 0.77087 1.21268 1.21831 1.20300 0.94222 0.92296 0.93662 0.91868 0.91497 0.91578 0.90589 0.74319 0.83210 0.82895 0.81245 0.91191 0.89707 0.91176 0.89262 0.90701 0.92322 0.92275 0.90686 0.89246 0.80716 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 9.49 37.16 0.35 -2.61 16 2 C 0.18 3.61 2.89 -67.93 -0.20 3.42 16 3 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 4 C -0.13 -2.28 4.87 -26.73 -0.13 -2.41 16 5 C 0.12 2.25 5.57 -4.05 -0.02 2.23 16 6 N -0.72 -12.33 5.47 -61.50 -0.34 -12.67 16 7 C 0.57 10.02 7.73 -12.68 -0.10 9.92 16 8 O -0.55 -11.46 16.41 5.23 0.09 -11.37 16 9 C -0.27 -3.60 5.92 -104.51 -0.62 -4.22 16 10 C 0.05 0.54 9.69 -38.71 -0.38 0.17 16 11 C -0.24 -1.41 9.99 -40.01 -0.40 -1.81 16 12 C 0.15 0.75 9.58 -16.85 -0.16 0.59 16 13 N -0.48 -3.74 2.53 -105.38 -0.27 -4.01 16 14 C 0.14 0.85 1.02 -131.82 -0.13 0.72 16 15 C -0.16 -0.40 7.09 37.16 0.26 -0.14 16 16 C -0.16 -1.07 8.39 37.16 0.31 -0.76 16 17 C -0.17 -1.13 8.39 37.15 0.31 -0.82 16 18 C 0.53 6.31 6.84 -14.92 -0.10 6.21 16 19 O -0.54 -7.25 9.83 5.03 0.05 -7.20 16 20 N -0.75 -18.42 4.38 -53.42 -0.23 -18.65 16 21 C -0.24 -6.93 10.41 -15.06 -0.16 -7.08 16 22 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 23 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 24 N -0.94 -30.44 13.97 55.49 0.78 -29.66 16 25 Si 0.88 23.31 27.74 -169.99 -4.71 18.59 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.82 7.11 56.52 0.40 -7.41 16 28 H -0.28 -7.02 6.52 56.52 0.37 -6.65 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.08 1.66 7.75 -51.92 -0.40 1.26 16 36 H 0.41 6.59 5.08 -40.82 -0.21 6.38 16 37 H 0.15 1.48 7.71 -52.48 -0.40 1.08 16 38 H 0.15 0.43 8.06 -52.48 -0.42 0.00 16 39 H 0.17 0.20 5.55 -52.48 -0.29 -0.09 16 40 H 0.07 0.10 7.41 -51.93 -0.38 -0.28 16 41 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.07 0.11 7.41 -51.93 -0.38 -0.27 16 43 H 0.09 0.84 6.12 -51.93 -0.32 0.52 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.09 0.87 6.12 -51.93 -0.32 0.56 16 49 H 0.36 8.84 5.66 -40.82 -0.23 8.61 16 50 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -37.28 395.30 -7.96 -45.24 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -8.03 Total: 10.36 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -1.25 Total: 3.41 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -0.06 Total: -64.99 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.14 Total: -18.58 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.71 Total: 18.59 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.28 -7.96 -45.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274797484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.087 kcal (2) G-P(sol) polarization free energy of solvation -37.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds