Wall clock time and date at job start Tue Mar 31 2020 19:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 5 5 C 1.36931 * 119.99971 * 274.99678 * 4 2 1 6 6 H 1.08005 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00390 * 180.02562 * 5 4 2 8 8 N 1.31624 * 119.99556 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00553 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47196 * 60.00050 * 9 7 5 11 11 H 1.48500 * 109.47547 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46942 * 299.99859 * 9 7 5 13 13 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 14 14 H 1.09002 * 109.47153 * 300.00319 * 13 2 1 15 15 C 1.52992 * 109.47482 * 180.02562 * 13 2 1 16 16 N 1.46497 * 109.47188 * 59.99892 * 13 2 1 17 17 C 1.34774 * 120.00383 * 204.99951 * 16 13 2 18 18 O 1.21609 * 120.00085 * 0.02562 * 17 16 13 19 19 C 1.47427 * 120.00190 * 180.02562 * 17 16 13 20 20 C 1.36088 * 126.44926 * 179.69005 * 19 17 16 21 21 O 1.34257 * 106.95043 * 179.89804 * 20 19 17 22 22 C 1.34047 * 108.22483 * 0.36650 * 21 20 19 23 23 C 1.50701 * 125.37764 * 179.73478 * 22 21 20 24 24 C 1.53002 * 109.47202 * 60.03885 * 23 22 21 25 25 C 1.52999 * 109.46545 * 180.02562 * 24 23 22 26 26 C 1.52995 * 109.47632 * 60.00513 * 25 24 23 27 27 C 1.53002 * 109.46737 * 299.99370 * 26 25 24 28 28 C 1.53001 * 109.47187 * 60.00027 * 27 26 25 29 29 N 1.29934 * 109.24315 * 359.76571 * 22 21 20 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 33 33 H 0.97004 * 120.00223 * 94.99655 * 4 2 1 34 34 H 0.96997 * 119.99679 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47747 * 179.97438 * 15 13 2 36 36 H 1.09002 * 109.47103 * 300.00247 * 15 13 2 37 37 H 1.09001 * 109.47066 * 60.00169 * 15 13 2 38 38 H 0.97004 * 119.99924 * 25.00373 * 16 13 2 39 39 H 1.08006 * 126.52640 * 0.03821 * 20 19 17 40 40 H 1.09007 * 109.47034 * 180.02562 * 23 22 21 41 41 H 1.08996 * 109.46833 * 299.99930 * 24 23 22 42 42 H 1.08994 * 109.47094 * 59.99871 * 24 23 22 43 43 H 1.08996 * 109.47364 * 299.99441 * 25 24 23 44 44 H 1.09009 * 109.46422 * 179.97438 * 25 24 23 45 45 H 1.08994 * 109.47202 * 179.97438 * 26 25 24 46 46 H 1.08996 * 109.47621 * 59.99085 * 26 25 24 47 47 H 1.09001 * 109.47141 * 300.00533 * 27 26 25 48 48 H 1.09002 * 109.47261 * 179.97438 * 27 26 25 49 49 H 1.08998 * 109.47355 * 179.97438 * 28 27 26 50 50 H 1.09002 * 109.47387 * 60.00029 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3757 6 1 1.8927 1.0405 2.4242 7 6 2.6123 -0.6617 3.5090 8 7 2.9253 -1.9388 3.4499 9 14 2.7901 0.2700 5.1183 10 1 1.4674 0.8058 5.5288 11 1 3.3003 -0.6481 6.1681 12 1 3.7446 1.3931 4.9371 13 6 2.0400 -0.7213 -1.2492 14 1 1.6766 -1.7489 -1.2492 15 6 3.5699 -0.7219 -1.2490 16 7 1.5516 -0.0307 -2.4454 17 6 1.4229 -0.7031 -3.6063 18 8 1.7117 -1.8831 -3.6609 19 6 0.9320 -0.0080 -4.8102 20 6 0.7580 -0.5539 -6.0446 21 8 0.2955 0.4218 -6.8424 22 6 0.1951 1.5444 -6.1168 23 6 -0.2803 2.8778 -6.6337 24 6 -1.7108 2.7406 -7.1590 25 6 -2.1931 4.0943 -7.6843 26 6 -1.2759 4.5577 -8.8178 27 6 0.1545 4.6949 -8.2926 28 6 0.6370 3.3413 -7.7672 29 7 0.5731 1.3016 -4.8977 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.2490 -1.6318 1.1526 34 1 3.2493 -2.3958 4.2417 35 1 3.9333 -1.2361 -2.1387 36 1 3.9336 0.3056 -1.2488 37 1 3.9329 -1.2360 -0.3590 38 1 1.3210 0.9105 -2.4018 39 1 0.9527 -1.5778 -6.3279 40 1 -0.2587 3.6094 -5.8259 41 1 -1.7326 2.0091 -7.9667 42 1 -2.3641 2.4100 -6.3516 43 1 -2.1712 4.8261 -6.8769 44 1 -3.2121 3.9964 -8.0589 45 1 -1.6198 5.5218 -9.1923 46 1 -1.2978 3.8259 -9.6252 47 1 0.1765 5.4267 -7.4850 48 1 0.8081 5.0246 -9.1002 49 1 1.6562 3.4389 -7.3934 50 1 0.6151 2.6094 -8.5746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275580140.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:30 Heat of formation + Delta-G solvation = -32.851299 kcal Electronic energy + Delta-G solvation = -28813.163947 eV Core-core repulsion = 24841.118768 eV Total energy + Delta-G solvation = -3972.045179 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.67184 -39.56178 -38.92525 -36.72011 -35.07367 -33.87435 -32.71818 -31.67005 -31.28711 -29.74584 -29.10386 -28.35172 -24.61929 -24.06655 -23.95429 -23.11517 -22.47754 -21.35397 -20.64812 -20.08439 -19.69147 -18.15614 -17.33891 -16.96115 -16.63681 -16.11448 -15.56742 -14.98387 -14.82460 -14.69936 -14.66360 -14.53352 -14.13000 -13.71105 -13.54091 -13.28407 -13.10684 -13.02726 -13.00441 -12.72233 -12.39617 -11.86702 -11.76819 -11.69427 -11.66083 -11.45371 -11.15064 -11.05191 -11.02985 -10.92979 -10.82605 -10.80407 -10.68198 -10.65308 -10.22700 -10.07786 -9.85789 -9.65277 -9.22998 -8.98339 -8.72119 -6.97167 -5.75661 -3.05134 0.95519 1.84347 2.32738 3.17412 3.35173 3.44818 3.49056 3.50194 3.55651 4.17084 4.21723 4.37183 4.58453 4.61977 4.69871 4.71994 4.79377 4.92124 4.93358 4.98889 5.11437 5.22585 5.32481 5.36574 5.45973 5.51491 5.53918 5.58817 5.62113 5.63083 5.69797 5.71467 5.78134 5.78162 5.87065 5.93484 5.94016 6.14718 6.24998 6.41821 6.45702 6.57214 6.65483 6.84151 6.95338 7.05702 7.26174 7.70043 7.73690 8.31522 8.42084 9.53242 10.08524 10.44026 11.46644 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018680 B = 0.002114 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.573609 B =13242.308574 C =14094.511663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.169 3.831 3 H 0.051 0.949 4 N -0.718 5.718 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.134 3.866 14 H 0.087 0.913 15 C -0.152 4.152 16 N -0.696 5.696 17 C 0.598 3.402 18 O -0.540 6.540 19 C -0.065 4.065 20 C 0.006 3.994 21 O -0.195 6.195 22 C 0.201 3.799 23 C 0.011 3.989 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.118 4.118 28 C -0.116 4.116 29 N -0.457 5.457 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.046 0.954 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.406 0.594 39 H 0.230 0.770 40 H 0.115 0.885 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.070 0.930 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.194 11.957 -28.219 31.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.058 3.942 3 H 0.069 0.931 4 N -0.360 5.360 5 C -0.369 4.369 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.030 3.970 14 H 0.105 0.895 15 C -0.211 4.211 16 N -0.346 5.346 17 C 0.383 3.617 18 O -0.417 6.417 19 C -0.185 4.185 20 C -0.068 4.068 21 O -0.081 6.081 22 C -0.008 4.008 23 C -0.008 4.008 24 C -0.155 4.155 25 C -0.156 4.156 26 C -0.161 4.161 27 C -0.156 4.156 28 C -0.154 4.154 29 N -0.187 5.187 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.241 0.759 39 H 0.247 0.753 40 H 0.133 0.867 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.943 11.661 -27.577 30.977 hybrid contribution 0.068 -0.055 0.533 0.540 sum -7.875 11.606 -27.044 30.465 Atomic orbital electron populations 1.22443 0.98993 1.01081 0.99944 1.20382 0.92162 0.95613 0.85994 0.93066 1.42279 1.78227 1.10669 1.04786 1.19147 1.36802 0.93847 0.87102 0.91204 1.24744 1.02102 0.95995 0.98046 1.69655 1.50634 1.08606 1.29030 0.86264 0.77736 0.78571 0.83562 1.21317 1.21739 1.21295 1.21419 0.94594 0.97602 0.83376 0.89522 1.22054 0.94729 1.01892 1.02393 1.45895 1.65175 1.14425 1.09107 1.16729 0.77732 0.85600 0.81685 1.90824 1.51401 1.14817 1.84676 1.21931 1.09375 0.90881 0.96325 1.25297 0.98378 0.94271 0.88832 1.84356 1.63827 1.18627 1.41257 1.26264 0.99869 0.89379 0.85290 1.19858 0.95669 0.86062 0.99233 1.21640 0.93903 0.98596 1.01326 1.21525 0.99194 0.96314 0.98525 1.21587 0.94933 1.01480 0.98072 1.21527 0.96507 0.96532 1.00988 1.21641 0.98732 0.97938 0.97139 1.70789 1.14933 1.14285 1.18667 0.92599 0.94480 0.93443 0.78040 0.93433 0.93432 0.92991 0.89937 0.75874 0.75343 0.86687 0.91065 0.91060 0.91400 0.91354 0.91698 0.91792 0.91406 0.91364 0.91097 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 9.33 37.16 0.35 -2.71 16 2 C 0.17 3.36 2.52 -67.93 -0.17 3.19 16 3 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 4 N -0.72 -17.72 4.43 -53.43 -0.24 -17.95 16 5 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 6 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.98 13.06 55.49 0.72 -27.25 16 9 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 13 C 0.13 2.42 2.20 -67.94 -0.15 2.27 16 14 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 15 C -0.15 -2.75 9.33 37.15 0.35 -2.40 16 16 N -0.70 -10.93 4.38 -54.89 -0.24 -11.17 16 17 C 0.60 9.60 7.78 -12.52 -0.10 9.51 16 18 O -0.54 -10.05 16.55 5.27 0.09 -9.96 16 19 C -0.06 -0.88 6.99 -83.02 -0.58 -1.46 16 20 C 0.01 0.06 11.94 29.96 0.36 0.42 16 21 O -0.19 -1.98 10.73 6.52 0.07 -1.91 16 22 C 0.20 2.05 6.81 -13.08 -0.09 1.97 16 23 C 0.01 0.08 2.66 -91.77 -0.24 -0.17 16 24 C -0.12 -0.68 5.19 -26.73 -0.14 -0.82 16 25 C -0.12 -0.53 5.92 -26.73 -0.16 -0.69 16 26 C -0.12 -0.51 5.92 -26.73 -0.16 -0.67 16 27 C -0.12 -0.53 5.92 -26.73 -0.16 -0.68 16 28 C -0.12 -0.67 5.18 -26.73 -0.14 -0.81 16 29 N -0.46 -5.78 11.06 -7.65 -0.08 -5.86 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.04 0.59 7.45 -51.93 -0.39 0.21 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.39 10.20 7.58 -40.82 -0.31 9.89 16 34 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.66 7.44 -51.93 -0.39 1.27 16 38 H 0.41 5.84 8.12 -40.82 -0.33 5.51 16 39 H 0.23 1.84 8.06 -52.48 -0.42 1.42 16 40 H 0.12 0.78 8.14 -51.92 -0.42 0.36 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.28 8.14 -51.92 -0.42 -0.15 16 45 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 48 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 406.79 15.07 6.13 6.13 Total: -1.00 -32.01 406.79 -8.39 -40.40 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -8.54 Total: 10.44 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.28 Total: -0.18 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: 0.16 Total: -62.24 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.16 Total: -11.87 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.01 -8.39 -40.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275580140.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.547 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds