Wall clock time and date at job start Tue Mar 31 2020 19:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47261 * 2 1 4 4 N 1.46494 * 109.46827 * 120.00425 * 2 1 3 5 5 C 1.34780 * 120.00170 * 274.99718 * 4 2 1 6 6 O 1.21618 * 119.99391 * 0.02562 * 5 4 2 7 7 C 1.47416 * 120.00549 * 180.02562 * 5 4 2 8 8 C 1.36091 * 126.45425 * 180.02562 * 7 5 4 9 9 O 1.34247 * 106.95153 * 179.97438 * 8 7 5 10 10 C 1.34053 * 108.22943 * 0.02562 * 9 8 7 11 11 C 1.50698 * 125.37875 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.47346 * 59.94745 * 11 10 9 13 13 C 1.52999 * 109.47506 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46950 * 59.99616 * 13 12 11 15 15 C 1.52998 * 109.47621 * 300.00622 * 14 13 12 16 16 C 1.52996 * 109.47211 * 299.94918 * 11 10 9 17 17 N 1.29933 * 109.24350 * 359.97438 * 10 9 8 18 18 C 1.53004 * 109.46950 * 240.00322 * 2 1 3 19 19 H 1.09003 * 109.46989 * 299.99617 * 18 2 1 20 20 C 1.53002 * 109.46611 * 180.02562 * 18 2 1 21 21 N 1.46494 * 109.47103 * 60.00001 * 18 2 1 22 22 C 1.36940 * 119.99983 * 204.99531 * 21 18 2 23 23 H 1.08000 * 119.99685 * 0.02562 * 22 21 18 24 24 C 1.38808 * 119.99972 * 180.02562 * 22 21 18 25 25 N 1.31625 * 120.00098 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00283 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47203 * 89.99823 * 26 24 22 28 28 H 1.48504 * 109.47314 * 209.99869 * 26 24 22 29 29 H 1.48502 * 109.46850 * 330.00039 * 26 24 22 30 30 H 1.08997 * 109.47347 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47173 * 300.00207 * 1 2 3 32 32 H 1.09005 * 109.47171 * 59.99523 * 1 2 3 33 33 H 0.97002 * 120.00160 * 95.00081 * 4 2 1 34 34 H 1.08006 * 126.52112 * 0.02562 * 8 7 5 35 35 H 1.09001 * 109.47109 * 179.97438 * 11 10 9 36 36 H 1.09001 * 109.47181 * 300.00156 * 12 11 10 37 37 H 1.09006 * 109.46908 * 59.99741 * 12 11 10 38 38 H 1.09001 * 109.47066 * 300.00272 * 13 12 11 39 39 H 1.08999 * 109.47400 * 180.02562 * 13 12 11 40 40 H 1.08998 * 109.46966 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.46701 * 60.00433 * 14 13 12 42 42 H 1.09001 * 109.46473 * 299.99949 * 15 14 13 43 43 H 1.09000 * 109.47601 * 180.02562 * 15 14 13 44 44 H 1.08999 * 109.47015 * 300.00133 * 16 11 10 45 45 H 1.09001 * 109.47517 * 59.99720 * 16 11 10 46 46 H 1.09008 * 109.46564 * 179.97438 * 20 18 2 47 47 H 1.08995 * 109.47313 * 299.99502 * 20 18 2 48 48 H 1.08997 * 109.47480 * 60.00523 * 20 18 2 49 49 H 0.97002 * 120.00164 * 24.99969 * 21 18 2 50 50 H 0.96995 * 120.00294 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8574 1.1615 2.4118 7 6 2.6388 -0.7132 3.5607 8 6 2.8180 -0.1661 4.7938 9 8 3.2768 -1.1427 5.5925 10 6 3.3780 -2.2652 4.8666 11 6 3.8549 -3.5982 5.3831 12 6 2.9388 -4.0632 6.5169 13 6 3.4226 -5.4169 7.0408 14 6 4.8534 -5.2791 7.5650 15 6 5.7694 -4.8140 6.4313 16 6 5.2855 -3.4597 5.9075 17 7 2.9990 -2.0226 3.6477 18 6 2.0400 -0.7212 -1.2493 19 1 1.6767 -1.7489 -1.2493 20 6 3.5700 -0.7217 -1.2489 21 7 1.5516 -0.0305 -2.4454 22 6 1.4209 -0.7136 -3.6251 23 1 1.6774 -1.7616 -3.6735 24 6 0.9587 -0.0590 -4.7585 25 7 0.8325 -0.7157 -5.8923 26 14 0.5157 1.7537 -4.6749 27 1 1.7135 2.5713 -4.9943 28 1 -0.5595 2.0463 -5.6566 29 1 0.0409 2.0846 -3.3073 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2489 -1.6319 1.1525 34 1 2.6267 0.8587 5.0763 35 1 3.8337 -4.3295 4.5751 36 1 2.9605 -3.3317 7.3247 37 1 1.9196 -4.1618 6.1433 38 1 3.4006 -6.1481 6.2328 39 1 2.7697 -5.7484 7.8483 40 1 5.1982 -6.2435 7.9379 41 1 4.8754 -4.5478 8.3730 42 1 5.7473 -5.5453 5.6233 43 1 6.7888 -4.7162 6.8046 44 1 5.9381 -3.1284 5.0998 45 1 5.3072 -2.7282 6.7153 46 1 3.9333 -1.2359 -2.1388 47 1 3.9337 0.3058 -1.2487 48 1 3.9330 -1.2359 -0.3590 49 1 1.3209 0.9106 -2.4018 50 1 0.5092 -0.2584 -6.6842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001275580141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:33 Heat of formation + Delta-G solvation = -28.963191 kcal Electronic energy + Delta-G solvation = -28883.760060 eV Core-core repulsion = 24911.883482 eV Total energy + Delta-G solvation = -3971.876578 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.71739 -39.66253 -38.94468 -36.89734 -35.12241 -33.99820 -32.74651 -31.75509 -31.29896 -29.94008 -29.20163 -28.87079 -24.70144 -24.09375 -23.83874 -23.13180 -22.40177 -21.35544 -20.66346 -20.22928 -19.76517 -18.33155 -17.66086 -17.00668 -16.68668 -16.15647 -15.76389 -15.01573 -14.85514 -14.73089 -14.68681 -14.49404 -14.25830 -13.86803 -13.64098 -13.44713 -13.12385 -13.03644 -12.90600 -12.73655 -12.49486 -12.15805 -11.85592 -11.78353 -11.69721 -11.51100 -11.34540 -11.10283 -11.06461 -11.05841 -10.90374 -10.83849 -10.76031 -10.69702 -10.31149 -10.10852 -9.92736 -9.58742 -9.28392 -9.04178 -8.81074 -7.29475 -5.77273 -3.13589 0.90273 1.79112 2.28457 3.09309 3.27328 3.39021 3.42715 3.46835 3.50245 4.15197 4.20067 4.34470 4.56631 4.59436 4.64674 4.70509 4.74296 4.90020 4.91804 4.97338 5.09567 5.16583 5.19823 5.32422 5.41098 5.42594 5.44198 5.52447 5.57370 5.60111 5.61717 5.63863 5.67521 5.72480 5.76690 5.84034 5.92567 6.03401 6.10908 6.27148 6.31492 6.42510 6.53608 6.68526 6.81080 6.95515 7.20632 7.64494 7.97246 8.22254 8.41087 9.18625 9.91151 10.10303 11.40728 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021053 B = 0.002163 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.681682 B =12943.116410 C =13636.019514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.132 3.868 3 H 0.086 0.914 4 N -0.696 5.696 5 C 0.600 3.400 6 O -0.541 6.541 7 C -0.066 4.066 8 C 0.007 3.993 9 O -0.194 6.194 10 C 0.203 3.797 11 C 0.011 3.989 12 C -0.116 4.116 13 C -0.118 4.118 14 C -0.123 4.123 15 C -0.118 4.118 16 C -0.116 4.116 17 N -0.457 5.457 18 C 0.174 3.826 19 H 0.061 0.939 20 C -0.165 4.165 21 N -0.742 5.742 22 C -0.241 4.241 23 H 0.091 0.909 24 C 0.006 3.994 25 N -0.933 5.933 26 Si 0.882 3.118 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.276 1.276 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.408 0.592 34 H 0.230 0.770 35 H 0.116 0.884 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.046 0.954 48 H 0.040 0.960 49 H 0.362 0.638 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.942 -7.851 31.170 33.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.027 3.973 3 H 0.104 0.896 4 N -0.346 5.346 5 C 0.384 3.616 6 O -0.418 6.418 7 C -0.186 4.186 8 C -0.067 4.067 9 O -0.080 6.080 10 C -0.007 4.007 11 C -0.009 4.009 12 C -0.154 4.154 13 C -0.156 4.156 14 C -0.161 4.161 15 C -0.156 4.156 16 C -0.155 4.155 17 N -0.186 5.186 18 C 0.064 3.936 19 H 0.079 0.921 20 C -0.225 4.225 21 N -0.386 5.386 22 C -0.371 4.371 23 H 0.109 0.891 24 C -0.190 4.190 25 N -0.580 5.580 26 Si 0.712 3.288 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.202 1.202 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.243 0.757 34 H 0.246 0.754 35 H 0.134 0.866 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.195 0.805 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.697 -7.632 30.490 32.359 hybrid contribution -0.252 1.527 0.282 1.573 sum 7.445 -6.105 30.772 32.243 Atomic orbital electron populations 1.22076 0.94760 1.02293 1.02153 1.21428 0.94602 0.97572 0.83696 0.89625 1.45848 1.65245 1.14523 1.08975 1.16726 0.77621 0.85561 0.81671 1.90822 1.51441 1.14865 1.84708 1.21890 1.09505 0.90914 0.96301 1.25289 0.98343 0.94244 0.88823 1.84359 1.63915 1.18586 1.41167 1.26278 0.99748 0.89398 0.85231 1.19867 0.95680 0.86040 0.99280 1.21641 0.98732 0.97951 0.97117 1.21525 0.96506 0.96511 1.01022 1.21588 0.94929 1.01484 0.98072 1.21534 0.99197 0.96288 0.98548 1.21649 0.93872 0.98612 1.01327 1.70798 1.14915 1.14239 1.18697 1.20351 0.92374 0.95919 0.84962 0.92148 1.22414 0.98436 1.01123 1.00534 1.42648 1.79793 1.09451 1.06665 1.19018 1.37158 0.95609 0.85302 0.89113 1.24652 1.01339 0.97486 0.95548 1.69696 1.52548 1.35556 1.00244 0.86587 0.78180 0.86839 0.77149 1.21076 1.21744 1.20183 0.92482 0.93181 0.90545 0.75659 0.75362 0.86636 0.91071 0.91097 0.91384 0.91351 0.91679 0.91798 0.91375 0.91341 0.91063 0.91069 0.92070 0.93529 0.94121 0.80470 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.33 37.16 0.35 -2.27 16 2 C 0.13 2.24 2.21 -67.93 -0.15 2.09 16 3 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 4 N -0.70 -10.38 4.38 -54.88 -0.24 -10.62 16 5 C 0.60 9.18 7.78 -12.52 -0.10 9.09 16 6 O -0.54 -9.60 16.55 5.26 0.09 -9.52 16 7 C -0.07 -0.86 6.99 -83.02 -0.58 -1.44 16 8 C 0.01 0.07 11.95 29.96 0.36 0.43 16 9 O -0.19 -1.90 10.73 6.53 0.07 -1.83 16 10 C 0.20 2.00 6.81 -13.08 -0.09 1.91 16 11 C 0.01 0.07 2.66 -91.77 -0.24 -0.17 16 12 C -0.12 -0.65 5.19 -26.73 -0.14 -0.79 16 13 C -0.12 -0.51 5.92 -26.73 -0.16 -0.67 16 14 C -0.12 -0.50 5.92 -26.73 -0.16 -0.65 16 15 C -0.12 -0.52 5.92 -26.71 -0.16 -0.68 16 16 C -0.12 -0.66 5.19 -26.71 -0.14 -0.80 16 17 N -0.46 -5.59 11.06 -7.65 -0.08 -5.67 16 18 C 0.17 3.30 2.52 -67.93 -0.17 3.13 16 19 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 20 C -0.17 -2.93 9.33 37.16 0.35 -2.59 16 21 N -0.74 -17.22 4.23 -53.43 -0.23 -17.45 16 22 C -0.24 -6.66 10.41 -15.06 -0.16 -6.82 16 23 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 25 N -0.93 -29.11 13.97 55.49 0.78 -28.33 16 26 Si 0.88 22.15 27.74 -169.99 -4.71 17.43 16 27 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 29 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.41 7.45 -51.93 -0.39 1.02 16 33 H 0.41 5.58 8.12 -40.82 -0.33 5.25 16 34 H 0.23 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.04 0.62 7.44 -51.93 -0.39 0.23 16 49 H 0.36 8.39 5.44 -40.82 -0.22 8.17 16 50 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -32.91 403.68 -8.03 -40.94 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -8.50 Total: 9.12 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.29 Total: -0.16 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.22 Total: -62.07 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.16 Total: -11.35 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.91 -8.03 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275580141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.973 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds