Wall clock time and date at job start Tue Mar 31 2020 19:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47261 * 2 1 4 4 N 1.46494 * 109.46827 * 120.00425 * 2 1 3 5 5 C 1.34780 * 120.00170 * 274.99718 * 4 2 1 6 6 O 1.21618 * 119.99391 * 0.02562 * 5 4 2 7 7 C 1.47416 * 120.00549 * 180.02562 * 5 4 2 8 8 C 1.36091 * 126.45425 * 180.02562 * 7 5 4 9 9 O 1.34247 * 106.95153 * 179.97438 * 8 7 5 10 10 C 1.34053 * 108.22943 * 0.02562 * 9 8 7 11 11 C 1.50698 * 125.37875 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.47346 * 59.94745 * 11 10 9 13 13 C 1.52999 * 109.47506 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46950 * 59.99616 * 13 12 11 15 15 C 1.52998 * 109.47621 * 300.00622 * 14 13 12 16 16 C 1.52996 * 109.47211 * 299.94918 * 11 10 9 17 17 N 1.29933 * 109.24350 * 359.97438 * 10 9 8 18 18 C 1.53004 * 109.46950 * 240.00322 * 2 1 3 19 19 H 1.09003 * 109.46989 * 299.99617 * 18 2 1 20 20 C 1.53002 * 109.46611 * 180.02562 * 18 2 1 21 21 N 1.46494 * 109.47103 * 60.00001 * 18 2 1 22 22 C 1.36940 * 119.99983 * 204.99531 * 21 18 2 23 23 H 1.08000 * 119.99685 * 0.02562 * 22 21 18 24 24 C 1.38808 * 119.99972 * 180.02562 * 22 21 18 25 25 N 1.31625 * 120.00098 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00283 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47203 * 89.99823 * 26 24 22 28 28 H 1.48504 * 109.47314 * 209.99869 * 26 24 22 29 29 H 1.48502 * 109.46850 * 330.00039 * 26 24 22 30 30 H 1.08997 * 109.47347 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47173 * 300.00207 * 1 2 3 32 32 H 1.09005 * 109.47171 * 59.99523 * 1 2 3 33 33 H 0.97002 * 120.00160 * 95.00081 * 4 2 1 34 34 H 1.08006 * 126.52112 * 0.02562 * 8 7 5 35 35 H 1.09001 * 109.47109 * 179.97438 * 11 10 9 36 36 H 1.09001 * 109.47181 * 300.00156 * 12 11 10 37 37 H 1.09006 * 109.46908 * 59.99741 * 12 11 10 38 38 H 1.09001 * 109.47066 * 300.00272 * 13 12 11 39 39 H 1.08999 * 109.47400 * 180.02562 * 13 12 11 40 40 H 1.08998 * 109.46966 * 180.02562 * 14 13 12 41 41 H 1.09001 * 109.46701 * 60.00433 * 14 13 12 42 42 H 1.09001 * 109.46473 * 299.99949 * 15 14 13 43 43 H 1.09000 * 109.47601 * 180.02562 * 15 14 13 44 44 H 1.08999 * 109.47015 * 300.00133 * 16 11 10 45 45 H 1.09001 * 109.47517 * 59.99720 * 16 11 10 46 46 H 1.09008 * 109.46564 * 179.97438 * 20 18 2 47 47 H 1.08995 * 109.47313 * 299.99502 * 20 18 2 48 48 H 1.08997 * 109.47480 * 60.00523 * 20 18 2 49 49 H 0.97002 * 120.00164 * 24.99969 * 21 18 2 50 50 H 0.96995 * 120.00294 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8574 1.1615 2.4118 7 6 2.6388 -0.7132 3.5607 8 6 2.8180 -0.1661 4.7938 9 8 3.2768 -1.1427 5.5925 10 6 3.3780 -2.2652 4.8666 11 6 3.8549 -3.5982 5.3831 12 6 2.9388 -4.0632 6.5169 13 6 3.4226 -5.4169 7.0408 14 6 4.8534 -5.2791 7.5650 15 6 5.7694 -4.8140 6.4313 16 6 5.2855 -3.4597 5.9075 17 7 2.9990 -2.0226 3.6477 18 6 2.0400 -0.7212 -1.2493 19 1 1.6767 -1.7489 -1.2493 20 6 3.5700 -0.7217 -1.2489 21 7 1.5516 -0.0305 -2.4454 22 6 1.4209 -0.7136 -3.6251 23 1 1.6774 -1.7616 -3.6735 24 6 0.9587 -0.0590 -4.7585 25 7 0.8325 -0.7157 -5.8923 26 14 0.5157 1.7537 -4.6749 27 1 1.7135 2.5713 -4.9943 28 1 -0.5595 2.0463 -5.6566 29 1 0.0409 2.0846 -3.3073 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 2.2489 -1.6319 1.1525 34 1 2.6267 0.8587 5.0763 35 1 3.8337 -4.3295 4.5751 36 1 2.9605 -3.3317 7.3247 37 1 1.9196 -4.1618 6.1433 38 1 3.4006 -6.1481 6.2328 39 1 2.7697 -5.7484 7.8483 40 1 5.1982 -6.2435 7.9379 41 1 4.8754 -4.5478 8.3730 42 1 5.7473 -5.5453 5.6233 43 1 6.7888 -4.7162 6.8046 44 1 5.9381 -3.1284 5.0998 45 1 5.3072 -2.7282 6.7153 46 1 3.9333 -1.2359 -2.1388 47 1 3.9337 0.3058 -1.2487 48 1 3.9330 -1.2359 -0.3590 49 1 1.3209 0.9106 -2.4018 50 1 0.5092 -0.2584 -6.6842 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275580141.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:32 Heat of formation + Delta-G solvation = -51.561393 kcal Electronic energy + Delta-G solvation = -28884.739992 eV Core-core repulsion = 24911.883482 eV Total energy + Delta-G solvation = -3972.856509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.54500 -40.91312 -39.39109 -38.43292 -36.02734 -35.65386 -33.71621 -33.28551 -31.68779 -31.38009 -30.54325 -30.03480 -25.79782 -25.73501 -24.66514 -23.79114 -23.52115 -22.24794 -21.70709 -21.48406 -20.53646 -19.86064 -19.08876 -17.83697 -17.68382 -17.24113 -16.62523 -16.41083 -16.07708 -15.82028 -15.52267 -15.36076 -15.09684 -15.03611 -14.94663 -14.68596 -14.53529 -14.27019 -13.84506 -13.55967 -13.51348 -13.31684 -13.12677 -13.10069 -12.78550 -12.68329 -12.46010 -12.36546 -12.21256 -12.08649 -12.02856 -11.94373 -11.81119 -11.53935 -11.43129 -11.36570 -11.18735 -11.11683 -11.04451 -10.29716 -9.99982 -9.34217 -8.00997 -5.34872 0.02844 0.89419 1.39504 1.41008 1.47871 1.51273 1.95751 2.17705 2.48929 2.69300 3.30750 3.51504 3.63754 3.66481 3.75353 3.76918 3.84679 4.04755 4.10759 4.24977 4.25379 4.31249 4.43475 4.47291 4.53148 4.53590 4.58892 4.58938 4.68615 4.71377 4.80069 4.86175 4.90320 4.97045 5.05170 5.10496 5.11868 5.15256 5.24989 5.25231 5.25403 5.38914 5.40031 5.41008 5.44214 5.57804 5.78108 6.21826 6.25941 6.55238 7.02740 7.07621 7.81460 8.00576 9.20028 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021053 B = 0.002163 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.681682 B =12943.116410 C =13636.019514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.145 3.855 3 H 0.077 0.923 4 N -0.691 5.691 5 C 0.602 3.398 6 O -0.568 6.568 7 C -0.097 4.097 8 C 0.028 3.972 9 O -0.190 6.190 10 C 0.210 3.790 11 C 0.011 3.989 12 C -0.112 4.112 13 C -0.116 4.116 14 C -0.122 4.122 15 C -0.116 4.116 16 C -0.112 4.112 17 N -0.480 5.480 18 C 0.172 3.828 19 H 0.058 0.942 20 C -0.156 4.156 21 N -0.744 5.744 22 C -0.221 4.221 23 H 0.062 0.938 24 C -0.061 4.061 25 N -0.982 5.982 26 Si 0.947 3.053 27 H -0.282 1.282 28 H -0.297 1.297 29 H -0.252 1.252 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.414 0.586 34 H 0.256 0.744 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.045 0.955 48 H 0.067 0.933 49 H 0.365 0.635 50 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.523 -7.584 34.137 35.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.040 3.960 3 H 0.095 0.905 4 N -0.341 5.341 5 C 0.389 3.611 6 O -0.448 6.448 7 C -0.216 4.216 8 C -0.046 4.046 9 O -0.075 6.075 10 C 0.000 4.000 11 C -0.008 4.008 12 C -0.150 4.150 13 C -0.153 4.153 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.151 4.151 17 N -0.209 5.209 18 C 0.064 3.936 19 H 0.076 0.924 20 C -0.215 4.215 21 N -0.387 5.387 22 C -0.352 4.352 23 H 0.080 0.920 24 C -0.253 4.253 25 N -0.632 5.632 26 Si 0.775 3.225 27 H -0.208 1.208 28 H -0.224 1.224 29 H -0.177 1.177 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.251 0.749 34 H 0.272 0.728 35 H 0.135 0.865 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.090 0.910 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.086 0.914 49 H 0.198 0.802 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.299 -7.387 33.518 35.312 hybrid contribution -0.370 1.326 -0.519 1.471 sum 7.929 -6.061 32.999 34.475 Atomic orbital electron populations 1.22009 0.94598 1.02461 1.01663 1.21075 0.94579 0.96820 0.83525 0.90524 1.45691 1.65287 1.14713 1.08417 1.16956 0.76846 0.85242 0.82092 1.90801 1.52735 1.16036 1.85222 1.21640 1.12051 0.91671 0.96268 1.25782 0.95914 0.95037 0.87881 1.84405 1.63662 1.18551 1.40913 1.26888 0.98346 0.90111 0.84663 1.20061 0.96534 0.84495 0.99737 1.21617 0.98106 0.98736 0.96580 1.21520 0.96883 0.95636 1.01275 1.21586 0.94504 1.01960 0.97875 1.21529 0.99620 0.95434 0.98741 1.21626 0.92889 0.99503 1.01052 1.70756 1.16130 1.14083 1.19973 1.20486 0.93112 0.95646 0.84390 0.92358 1.22270 0.97120 1.01188 1.00940 1.42610 1.79961 1.09542 1.06630 1.18953 1.34946 0.94533 0.86766 0.91997 1.25405 1.02484 1.02119 0.95285 1.69865 1.54730 1.37534 1.01102 0.85528 0.77645 0.81271 0.78068 1.20802 1.22361 1.17653 0.92009 0.92582 0.92024 0.74875 0.72791 0.86505 0.91003 0.91746 0.91237 0.90639 0.90866 0.91670 0.91238 0.90669 0.91780 0.91003 0.93911 0.93602 0.91439 0.80176 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.87 9.33 71.98 0.67 -4.20 16 2 C 0.15 4.77 2.21 44.99 0.10 4.87 16 3 H 0.08 2.71 7.58 -2.39 -0.02 2.69 16 4 N -0.69 -19.73 4.38 -445.80 -1.95 -21.68 16 5 C 0.60 17.67 7.78 86.66 0.67 18.35 16 6 O -0.57 -19.47 16.55 -4.09 -0.07 -19.53 16 7 C -0.10 -2.38 6.99 40.40 0.28 -2.10 16 8 C 0.03 0.52 11.95 67.32 0.80 1.33 16 9 O -0.19 -3.31 10.73 0.45 0.00 -3.30 16 10 C 0.21 3.80 6.81 88.39 0.60 4.40 16 11 C 0.01 0.13 2.66 -11.54 -0.03 0.10 16 12 C -0.11 -1.06 5.19 30.60 0.16 -0.90 16 13 C -0.12 -0.76 5.92 30.59 0.18 -0.58 16 14 C -0.12 -0.70 5.92 30.59 0.18 -0.52 16 15 C -0.12 -0.78 5.92 30.61 0.18 -0.60 16 16 C -0.11 -1.08 5.19 30.61 0.16 -0.92 16 17 N -0.48 -11.10 11.06 -293.04 -3.24 -14.34 16 18 C 0.17 6.40 2.52 44.99 0.11 6.52 16 19 H 0.06 2.21 8.08 -2.39 -0.02 2.19 16 20 C -0.16 -5.36 9.33 71.98 0.67 -4.69 16 21 N -0.74 -34.08 4.23 -322.94 -1.37 -35.45 16 22 C -0.22 -12.35 10.41 84.03 0.87 -11.47 16 23 H 0.06 3.77 8.06 -2.91 -0.02 3.74 16 24 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 25 N -0.98 -62.72 13.97 21.65 0.30 -62.42 16 26 Si 0.95 45.82 27.74 68.60 1.90 47.72 16 27 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 28 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 29 H -0.25 -11.06 6.52 99.48 0.65 -10.41 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 2.20 7.45 -2.38 -0.02 2.18 16 33 H 0.41 10.81 8.12 -92.71 -0.75 10.06 16 34 H 0.26 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 48 H 0.07 1.95 7.44 -2.39 -0.02 1.94 16 49 H 0.36 16.39 5.44 -92.71 -0.50 15.89 16 50 H 0.26 15.72 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -70.90 403.68 1.30 -69.61 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: -0.38 Total: 32.96 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 6.09 Total: 6.43 kcal Atomic # 7 Polarization: -127.63 SS G_CDS: -6.26 Total: -133.89 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.06 Total: -22.83 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.90 Total: 47.72 kcal Total: -70.90 1.30 -69.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275580141.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.045 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds