Wall clock time and date at job start Tue Mar 31 2020 18:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32995 * 120.00242 * 2 1 4 4 C 1.47101 * 120.00261 * 172.83242 * 3 2 1 5 5 O 1.21613 * 119.99835 * 354.11144 * 4 3 2 6 6 N 1.34783 * 120.00080 * 174.10844 * 4 3 2 7 7 C 1.46494 * 120.00047 * 179.97438 * 6 4 3 8 8 H 1.09005 * 109.47374 * 325.00700 * 7 6 4 9 9 C 1.53002 * 109.46838 * 85.00452 * 7 6 4 10 10 C 1.53000 * 109.47281 * 205.00048 * 7 6 4 11 11 C 1.53935 * 113.73184 * 162.01776 * 10 7 6 12 12 N 1.47962 * 86.17657 * 221.92359 * 11 10 7 13 13 C 1.46903 * 110.99913 * 137.58450 * 12 11 10 14 14 C 1.50702 * 109.47031 * 90.63695 * 13 12 11 15 15 O 1.21290 * 120.00031 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99953 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00083 * 180.02562 * 16 14 13 18 18 H 1.08008 * 120.00066 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00151 * 180.02562 * 17 16 14 20 20 N 1.31406 * 119.99929 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99739 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46864 * 90.00361 * 21 19 17 23 23 H 1.48499 * 109.46606 * 210.00052 * 21 19 17 24 24 H 1.48495 * 109.47223 * 330.00180 * 21 19 17 25 25 C 1.47954 * 90.76739 * 24.69194 * 12 11 10 26 26 C 1.50697 * 120.00190 * 180.02562 * 2 1 3 27 27 C 1.53008 * 117.49964 * 1.77572 * 26 2 1 28 28 C 1.53000 * 117.50246 * 293.11700 * 26 2 1 29 29 H 1.09001 * 109.47107 * 89.99780 * 1 2 3 30 30 H 1.09000 * 109.47233 * 209.99588 * 1 2 3 31 31 H 1.09003 * 109.47214 * 329.99747 * 1 2 3 32 32 H 1.08009 * 119.99836 * 352.84163 * 3 2 1 33 33 H 0.96997 * 119.99495 * 0.02562 * 6 4 3 34 34 H 1.09005 * 109.47008 * 296.74105 * 9 7 6 35 35 H 1.09001 * 109.47262 * 176.74550 * 9 7 6 36 36 H 1.08992 * 109.47288 * 56.74075 * 9 7 6 37 37 H 1.09003 * 112.93824 * 293.72623 * 10 7 6 38 38 H 1.09001 * 113.76025 * 336.23734 * 11 10 7 39 39 H 1.08995 * 113.75998 * 107.60889 * 11 10 7 40 40 H 1.08995 * 109.47048 * 210.63694 * 13 12 11 41 41 H 1.08999 * 109.47237 * 330.64037 * 13 12 11 42 42 H 0.97004 * 119.99837 * 359.97438 * 16 14 13 43 43 H 0.97000 * 119.99957 * 179.97438 * 20 19 17 44 44 H 1.09000 * 113.76308 * 220.99420 * 25 12 11 45 45 H 1.09001 * 113.76091 * 89.62618 * 25 12 11 46 46 H 1.08999 * 115.55302 * 147.44244 * 26 2 1 47 47 H 1.08998 * 117.49289 * 0.02562 * 27 26 2 48 48 H 1.08992 * 117.49933 * 145.01701 * 27 26 2 49 49 H 1.08992 * 117.50284 * 214.97891 * 28 26 2 50 50 H 1.09001 * 117.49468 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6344 1.1567 0.1589 5 8 4.2236 0.1199 0.3972 6 7 4.3212 2.3103 0.0404 7 6 5.7775 2.3154 0.1993 8 1 6.0632 1.5833 0.9547 9 6 6.4371 1.9565 -1.1338 10 6 6.2380 3.7070 0.6378 11 6 7.6500 3.7280 1.2504 12 7 7.0917 4.6573 2.2574 13 6 7.5753 4.3262 3.6045 14 6 8.8421 5.0924 3.8859 15 8 9.2971 5.8409 3.0470 16 7 9.4695 4.9458 5.0697 17 6 10.6217 5.6432 5.3259 18 1 11.0269 6.3098 4.5789 19 6 11.2688 5.4916 6.5462 20 7 12.3734 6.1597 6.7915 21 14 10.5683 4.3382 7.8378 22 1 11.1376 2.9797 7.6491 23 1 10.9199 4.8386 9.1910 24 1 9.0910 4.2794 7.7001 25 6 5.7334 4.1153 2.0336 26 6 2.2605 -1.3050 -0.0006 27 6 1.4390 -2.5952 -0.0432 28 6 2.1524 -2.1839 1.2471 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6383 2.0835 -0.1166 33 1 3.8511 3.1373 -0.1493 34 1 6.1548 0.9426 -1.4175 35 1 7.5206 2.0166 -1.0309 36 1 6.1059 2.6545 -1.9026 37 1 6.0781 4.4678 -0.1264 38 1 7.9637 2.7694 1.6637 39 1 8.4023 4.1806 0.6045 40 1 6.8167 4.5959 4.3392 41 1 7.7764 3.2566 3.6657 42 1 9.1054 4.3474 5.7407 43 1 12.8249 6.0543 7.6435 44 1 4.9543 4.8773 2.0134 45 1 5.4865 3.2699 2.6759 46 1 3.2134 -1.2975 -0.5298 47 1 0.3535 -2.4998 -0.0713 48 1 1.8516 -3.4364 -0.6001 49 1 3.0339 -2.7547 1.5387 50 1 1.5365 -1.8179 2.0686 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276350363.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:39 Heat of formation + Delta-G solvation = 11.172834 kcal Electronic energy + Delta-G solvation = -28372.742181 eV Core-core repulsion = 24402.606032 eV Total energy + Delta-G solvation = -3970.136149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63822 -39.77389 -38.17847 -37.77206 -35.37086 -33.89499 -33.77778 -31.74905 -31.49260 -29.64627 -28.31563 -26.11434 -25.84874 -24.33121 -23.58478 -22.64036 -21.93839 -20.81455 -19.96282 -19.35196 -18.81153 -18.23979 -17.34501 -16.71359 -16.08962 -15.70879 -15.55783 -15.39856 -15.01157 -14.77917 -14.62608 -14.20831 -13.92705 -13.65763 -13.50307 -13.38110 -13.30796 -12.94563 -12.72033 -12.69452 -12.60444 -12.42640 -12.16046 -12.00021 -11.89249 -11.65054 -11.40166 -11.16579 -11.11021 -10.93530 -10.87247 -10.68778 -10.61168 -10.57200 -9.94493 -9.71262 -9.52884 -9.39599 -9.10759 -8.77482 -8.25723 -8.13962 -6.27831 -3.78911 0.98788 2.97272 3.04146 3.04794 3.08792 3.16787 3.65666 3.78047 3.87445 4.12949 4.17825 4.28820 4.42676 4.51612 4.65036 4.71602 4.77764 4.78548 4.94348 4.99839 5.06896 5.10966 5.15686 5.19223 5.23904 5.28043 5.37293 5.39972 5.41959 5.52368 5.58003 5.58474 5.60989 5.66181 5.74004 5.80825 5.89219 5.90317 5.98091 5.98710 6.00464 6.18817 6.22166 6.34956 6.51369 7.09667 7.35433 7.61828 8.08832 8.17957 8.64349 8.99168 9.46342 9.88581 10.85480 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002022 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.297160 B =13847.754584 C =14758.410841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.002 4.002 3 C -0.229 4.229 4 C 0.546 3.454 5 O -0.537 6.537 6 N -0.721 5.721 7 C 0.151 3.849 8 H 0.087 0.913 9 C -0.161 4.161 10 C -0.126 4.126 11 C 0.022 3.978 12 N -0.449 5.449 13 C 0.007 3.993 14 C 0.456 3.544 15 O -0.557 6.557 16 N -0.595 5.595 17 C -0.303 4.303 18 H 0.119 0.881 19 C 0.040 3.960 20 N -0.883 5.883 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.006 3.994 26 C -0.119 4.119 27 C -0.190 4.190 28 C -0.155 4.155 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.400 0.600 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.057 0.943 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.059 0.941 42 H 0.369 0.631 43 H 0.273 0.727 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.133 0.867 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.205 -15.212 -14.481 33.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.004 4.004 3 C -0.250 4.250 4 C 0.336 3.664 5 O -0.417 6.417 6 N -0.371 5.371 7 C 0.047 3.953 8 H 0.105 0.895 9 C -0.219 4.219 10 C -0.145 4.145 11 C -0.107 4.107 12 N -0.171 5.171 13 C -0.125 4.125 14 C 0.241 3.759 15 O -0.437 6.437 16 N -0.235 5.235 17 C -0.432 4.432 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.523 5.523 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.124 4.124 26 C -0.137 4.137 27 C -0.227 4.227 28 C -0.192 4.192 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.145 0.855 33 H 0.234 0.766 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.202 0.798 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.151 0.849 47 H 0.113 0.887 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.132 -14.656 -14.756 32.621 hybrid contribution -0.710 -1.169 1.400 1.957 sum -25.842 -15.825 -13.356 33.115 Atomic orbital electron populations 1.21029 0.91147 1.03396 1.03056 1.21823 0.95204 0.93411 0.89918 1.22354 0.93481 0.98669 1.10502 1.18534 0.87734 0.83452 0.76724 1.90756 1.71093 1.31318 1.48493 1.45963 1.07836 1.10352 1.72997 1.21010 0.79279 0.96856 0.98184 0.89450 1.22135 1.01186 1.01833 0.96783 1.23338 0.97391 0.96235 0.97559 1.23938 0.95943 0.95702 0.95148 1.68377 1.02009 1.43646 1.03029 1.22521 0.98122 0.98553 0.93334 1.19596 0.86272 0.86542 0.83476 1.90558 1.67092 1.39967 1.46127 1.42233 1.24832 1.41863 1.14564 1.19425 0.98808 1.22594 1.02340 0.86323 1.25031 0.96067 0.97758 0.97389 1.69620 1.17096 1.41102 1.24504 0.86676 0.79099 0.81481 0.82159 1.19680 1.20192 1.19545 1.23974 0.94249 0.98863 0.95270 1.21481 1.00582 0.87865 1.03783 1.23151 0.99047 0.98611 1.01922 1.22813 1.02701 1.02413 0.91255 0.90231 0.90735 0.90865 0.85474 0.76638 0.92259 0.91255 0.92402 0.87693 0.91215 0.88648 0.89393 0.92344 0.79813 0.91676 0.89393 0.91455 0.84899 0.88656 0.88638 0.88455 0.89069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.60 9.49 36.00 0.34 -0.26 16 2 C 0.00 -0.01 5.80 -101.17 -0.59 -0.60 16 3 C -0.23 -1.74 9.62 -37.81 -0.36 -2.10 16 4 C 0.55 5.44 7.64 -12.66 -0.10 5.34 16 5 O -0.54 -7.05 12.98 5.27 0.07 -6.98 16 6 N -0.72 -5.91 4.95 -54.99 -0.27 -6.18 16 7 C 0.15 1.44 2.29 -67.93 -0.16 1.28 16 8 H 0.09 1.01 7.49 -51.93 -0.39 0.62 16 9 C -0.16 -1.47 9.45 37.16 0.35 -1.11 16 10 C -0.13 -1.28 3.35 -89.68 -0.30 -1.58 16 11 C 0.02 0.30 7.34 -2.77 -0.02 0.28 16 12 N -0.45 -7.12 5.65 -239.76 -1.35 -8.48 16 13 C 0.01 0.12 5.28 -4.97 -0.03 0.09 16 14 C 0.46 10.69 7.83 -10.98 -0.09 10.60 16 15 O -0.56 -15.42 16.01 5.55 0.09 -15.33 16 16 N -0.59 -14.55 5.09 -10.96 -0.06 -14.60 16 17 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 18 H 0.12 3.91 7.39 -52.48 -0.39 3.52 16 19 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -26.16 13.96 55.50 0.77 -25.39 16 21 Si 0.88 19.74 27.74 -169.99 -4.71 15.03 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 25 C 0.01 0.06 7.39 -2.77 -0.02 0.04 16 26 C -0.12 -1.04 4.34 -91.77 -0.40 -1.44 16 27 C -0.19 -1.28 9.79 -26.69 -0.26 -1.54 16 28 C -0.15 -1.27 10.24 -26.69 -0.27 -1.54 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.31 6.38 -51.93 -0.33 -0.02 16 31 H 0.07 0.28 8.07 -51.93 -0.42 -0.14 16 32 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.40 2.34 8.58 -40.82 -0.35 1.99 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.62 8.01 -51.93 -0.42 0.21 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.91 7.37 -51.93 -0.38 0.53 16 39 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 41 H 0.06 0.88 7.38 -51.93 -0.38 0.50 16 42 H 0.37 7.95 5.76 -40.82 -0.24 7.71 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 46 H 0.13 1.46 6.24 -51.93 -0.32 1.13 16 47 H 0.10 0.50 6.31 -51.93 -0.33 0.18 16 48 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 407.19 15.07 6.14 6.14 Total: -1.00 -35.30 407.19 -9.64 -44.94 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -8.17 Total: 11.26 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.14 Total: -0.40 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.91 Total: -54.65 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: 0.16 Total: -22.31 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.71 Total: 15.03 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.30 -9.64 -44.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276350363.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.116 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds