Wall clock time and date at job start Tue Mar 31 2020 18:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32995 * 120.00242 * 2 1 4 4 C 1.47101 * 120.00261 * 172.83242 * 3 2 1 5 5 O 1.21613 * 119.99835 * 354.11144 * 4 3 2 6 6 N 1.34783 * 120.00080 * 174.10844 * 4 3 2 7 7 C 1.46494 * 120.00047 * 179.97438 * 6 4 3 8 8 H 1.09005 * 109.47374 * 325.00700 * 7 6 4 9 9 C 1.53002 * 109.46838 * 85.00452 * 7 6 4 10 10 C 1.53000 * 109.47281 * 205.00048 * 7 6 4 11 11 C 1.53935 * 113.73184 * 162.01776 * 10 7 6 12 12 N 1.47962 * 86.17657 * 221.92359 * 11 10 7 13 13 C 1.46903 * 110.99913 * 137.58450 * 12 11 10 14 14 C 1.50702 * 109.47031 * 90.63695 * 13 12 11 15 15 O 1.21290 * 120.00031 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99953 * 180.02562 * 14 13 12 17 17 C 1.37096 * 120.00083 * 180.02562 * 16 14 13 18 18 H 1.08008 * 120.00066 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00151 * 180.02562 * 17 16 14 20 20 N 1.31406 * 119.99929 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99739 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46864 * 90.00361 * 21 19 17 23 23 H 1.48499 * 109.46606 * 210.00052 * 21 19 17 24 24 H 1.48495 * 109.47223 * 330.00180 * 21 19 17 25 25 C 1.47954 * 90.76739 * 24.69194 * 12 11 10 26 26 C 1.50697 * 120.00190 * 180.02562 * 2 1 3 27 27 C 1.53008 * 117.49964 * 1.77572 * 26 2 1 28 28 C 1.53000 * 117.50246 * 293.11700 * 26 2 1 29 29 H 1.09001 * 109.47107 * 89.99780 * 1 2 3 30 30 H 1.09000 * 109.47233 * 209.99588 * 1 2 3 31 31 H 1.09003 * 109.47214 * 329.99747 * 1 2 3 32 32 H 1.08009 * 119.99836 * 352.84163 * 3 2 1 33 33 H 0.96997 * 119.99495 * 0.02562 * 6 4 3 34 34 H 1.09005 * 109.47008 * 296.74105 * 9 7 6 35 35 H 1.09001 * 109.47262 * 176.74550 * 9 7 6 36 36 H 1.08992 * 109.47288 * 56.74075 * 9 7 6 37 37 H 1.09003 * 112.93824 * 293.72623 * 10 7 6 38 38 H 1.09001 * 113.76025 * 336.23734 * 11 10 7 39 39 H 1.08995 * 113.75998 * 107.60889 * 11 10 7 40 40 H 1.08995 * 109.47048 * 210.63694 * 13 12 11 41 41 H 1.08999 * 109.47237 * 330.64037 * 13 12 11 42 42 H 0.97004 * 119.99837 * 359.97438 * 16 14 13 43 43 H 0.97000 * 119.99957 * 179.97438 * 20 19 17 44 44 H 1.09000 * 113.76308 * 220.99420 * 25 12 11 45 45 H 1.09001 * 113.76091 * 89.62618 * 25 12 11 46 46 H 1.08999 * 115.55302 * 147.44244 * 26 2 1 47 47 H 1.08998 * 117.49289 * 0.02562 * 27 26 2 48 48 H 1.08992 * 117.49933 * 145.01701 * 27 26 2 49 49 H 1.08992 * 117.50284 * 214.97891 * 28 26 2 50 50 H 1.09001 * 117.49468 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6344 1.1567 0.1589 5 8 4.2236 0.1199 0.3972 6 7 4.3212 2.3103 0.0404 7 6 5.7775 2.3154 0.1993 8 1 6.0632 1.5833 0.9547 9 6 6.4371 1.9565 -1.1338 10 6 6.2380 3.7070 0.6378 11 6 7.6500 3.7280 1.2504 12 7 7.0917 4.6573 2.2574 13 6 7.5753 4.3262 3.6045 14 6 8.8421 5.0924 3.8859 15 8 9.2971 5.8409 3.0470 16 7 9.4695 4.9458 5.0697 17 6 10.6217 5.6432 5.3259 18 1 11.0269 6.3098 4.5789 19 6 11.2688 5.4916 6.5462 20 7 12.3734 6.1597 6.7915 21 14 10.5683 4.3382 7.8378 22 1 11.1376 2.9797 7.6491 23 1 10.9199 4.8386 9.1910 24 1 9.0910 4.2794 7.7001 25 6 5.7334 4.1153 2.0336 26 6 2.2605 -1.3050 -0.0006 27 6 1.4390 -2.5952 -0.0432 28 6 2.1524 -2.1839 1.2471 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.6383 2.0835 -0.1166 33 1 3.8511 3.1373 -0.1493 34 1 6.1548 0.9426 -1.4175 35 1 7.5206 2.0166 -1.0309 36 1 6.1059 2.6545 -1.9026 37 1 6.0781 4.4678 -0.1264 38 1 7.9637 2.7694 1.6637 39 1 8.4023 4.1806 0.6045 40 1 6.8167 4.5959 4.3392 41 1 7.7764 3.2566 3.6657 42 1 9.1054 4.3474 5.7407 43 1 12.8249 6.0543 7.6435 44 1 4.9543 4.8773 2.0134 45 1 5.4865 3.2699 2.6759 46 1 3.2134 -1.2975 -0.5298 47 1 0.3535 -2.4998 -0.0713 48 1 1.8516 -3.4364 -0.6001 49 1 3.0339 -2.7547 1.5387 50 1 1.5365 -1.8179 2.0686 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276350363.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:38 Heat of formation + Delta-G solvation = -15.692789 kcal Electronic energy + Delta-G solvation = -28373.907162 eV Core-core repulsion = 24402.606032 eV Total energy + Delta-G solvation = -3971.301130 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.59439 -40.70004 -39.75035 -38.60781 -36.28755 -35.91853 -34.32576 -33.77460 -32.51222 -30.78637 -28.78353 -27.50353 -27.03207 -25.60321 -24.48875 -23.24160 -22.83580 -21.59152 -21.24715 -20.85488 -20.26978 -19.39918 -18.02554 -17.83415 -17.44841 -16.84517 -16.75474 -16.36319 -16.28270 -15.95843 -15.59165 -15.31262 -15.15491 -14.78915 -14.43105 -14.33255 -14.29481 -14.00264 -13.89247 -13.87262 -13.69993 -13.39683 -13.13497 -13.04156 -12.89849 -12.47181 -12.46152 -12.42704 -12.18764 -12.01605 -11.87908 -11.83981 -11.65943 -11.60111 -11.51882 -11.28124 -10.47903 -10.44416 -10.25880 -10.11407 -9.74179 -9.58736 -8.42631 -6.03342 0.41632 1.28127 1.33487 1.42357 1.94734 2.21158 2.27368 2.35992 2.61873 3.07528 3.12789 3.19997 3.42617 3.63444 3.66434 3.89924 4.04570 4.06988 4.14331 4.17710 4.18671 4.26397 4.31745 4.36477 4.42727 4.47333 4.48442 4.51528 4.68914 4.75992 4.76147 4.79754 4.83184 4.83375 4.96984 4.98252 5.12555 5.18956 5.24198 5.27752 5.33616 5.40847 5.48136 5.52258 5.62855 5.68524 5.89906 6.02229 6.58599 6.72662 6.87201 7.38567 7.41008 7.96461 8.75127 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002022 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.297160 B =13847.754584 C =14758.410841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.002 4.002 3 C -0.238 4.238 4 C 0.538 3.462 5 O -0.577 6.577 6 N -0.709 5.709 7 C 0.161 3.839 8 H 0.068 0.932 9 C -0.157 4.157 10 C -0.100 4.100 11 C 0.013 3.987 12 N -0.485 5.485 13 C 0.020 3.980 14 C 0.452 3.548 15 O -0.608 6.608 16 N -0.594 5.594 17 C -0.328 4.328 18 H 0.054 0.946 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.233 1.233 25 C 0.016 3.984 26 C -0.136 4.136 27 C -0.172 4.172 28 C -0.165 4.165 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.414 0.586 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.388 0.612 43 H 0.279 0.721 44 H 0.105 0.895 45 H 0.077 0.923 46 H 0.104 0.896 47 H 0.116 0.884 48 H 0.097 0.903 49 H 0.084 0.916 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.441 -16.891 -13.794 37.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.004 4.004 3 C -0.258 4.258 4 C 0.329 3.671 5 O -0.459 6.459 6 N -0.361 5.361 7 C 0.056 3.944 8 H 0.086 0.914 9 C -0.215 4.215 10 C -0.119 4.119 11 C -0.117 4.117 12 N -0.207 5.207 13 C -0.112 4.112 14 C 0.240 3.760 15 O -0.492 6.492 16 N -0.237 5.237 17 C -0.457 4.457 18 H 0.072 0.928 19 C -0.214 4.214 20 N -0.575 5.575 21 Si 0.785 3.215 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.156 1.156 25 C -0.112 4.112 26 C -0.154 4.154 27 C -0.208 4.208 28 C -0.202 4.202 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.175 0.825 33 H 0.251 0.749 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.134 0.866 41 H 0.103 0.897 42 H 0.224 0.776 43 H 0.089 0.911 44 H 0.124 0.876 45 H 0.096 0.904 46 H 0.122 0.878 47 H 0.134 0.866 48 H 0.116 0.884 49 H 0.102 0.898 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -29.408 -16.320 -14.092 36.466 hybrid contribution 0.692 -0.595 1.056 1.396 sum -28.716 -16.915 -13.036 35.786 Atomic orbital electron populations 1.21085 0.88740 1.04349 1.04138 1.22097 0.96787 0.92527 0.88958 1.22498 0.91996 1.00108 1.11227 1.19030 0.88869 0.83087 0.76064 1.90752 1.72038 1.32724 1.50338 1.45823 1.07140 1.10751 1.72356 1.20768 0.80210 0.95745 0.97715 0.91418 1.22088 1.01095 1.01356 0.96990 1.23125 0.94581 0.96729 0.97493 1.23975 0.97429 0.95234 0.95035 1.68336 1.04668 1.45298 1.02442 1.22448 0.94977 0.98694 0.95106 1.20899 0.87463 0.85529 0.82096 1.90531 1.68872 1.42158 1.47610 1.42074 1.23821 1.42031 1.15733 1.18998 1.01269 1.23490 1.01965 0.92755 1.26115 0.95979 0.99555 0.99795 1.69802 1.18909 1.43051 1.25709 0.85366 0.80335 0.78405 0.77426 1.18221 1.19810 1.15613 1.24040 0.92282 0.99447 0.95468 1.21406 1.00318 0.89712 1.04001 1.23233 0.99953 0.97412 1.00227 1.22826 1.02811 1.02728 0.91877 0.88907 0.90174 0.89537 0.82525 0.74930 0.93602 0.91455 0.91066 0.86504 0.90811 0.90800 0.86649 0.89704 0.77616 0.91134 0.87648 0.90433 0.87828 0.86557 0.88428 0.89752 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 9.49 71.24 0.68 -0.07 16 2 C 0.00 -0.02 5.80 -17.62 -0.10 -0.13 16 3 C -0.24 -3.06 9.62 23.43 0.23 -2.83 16 4 C 0.54 10.06 7.64 86.57 0.66 10.72 16 5 O -0.58 -15.24 12.98 -4.07 -0.05 -15.29 16 6 N -0.71 -10.17 4.95 -446.13 -2.21 -12.38 16 7 C 0.16 2.83 2.29 44.99 0.10 2.94 16 8 H 0.07 1.52 7.49 -2.38 -0.02 1.50 16 9 C -0.16 -2.74 9.45 71.98 0.68 -2.06 16 10 C -0.10 -1.83 3.35 -10.15 -0.03 -1.87 16 11 C 0.01 0.34 7.34 86.41 0.63 0.97 16 12 N -0.48 -14.66 5.65 -912.45 -5.15 -19.81 16 13 C 0.02 0.63 5.28 85.56 0.45 1.08 16 14 C 0.45 21.35 7.83 87.66 0.69 22.04 16 15 O -0.61 -35.15 16.01 -3.06 -0.05 -35.20 16 16 N -0.59 -29.06 5.09 -306.98 -1.56 -30.63 16 17 C -0.33 -19.73 10.16 84.04 0.85 -18.88 16 18 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 19 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 20 N -0.93 -57.24 13.96 21.66 0.30 -56.94 16 21 Si 0.96 39.74 27.74 68.60 1.90 41.64 16 22 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 23 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 24 H -0.23 -8.13 6.52 99.48 0.65 -7.48 16 25 C 0.02 0.31 7.39 86.41 0.64 0.95 16 26 C -0.14 -2.31 4.34 -11.54 -0.05 -2.36 16 27 C -0.17 -2.05 9.79 30.62 0.30 -1.75 16 28 C -0.17 -2.62 10.24 30.62 0.31 -2.30 16 29 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.08 0.40 6.38 -2.39 -0.02 0.38 16 31 H 0.09 0.31 8.07 -2.39 -0.02 0.30 16 32 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.41 3.56 8.58 -92.71 -0.80 2.76 16 34 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.07 1.19 8.01 -2.39 -0.02 1.17 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.12 1.92 8.14 -2.39 -0.02 1.91 16 38 H 0.07 1.88 7.37 -2.39 -0.02 1.86 16 39 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.12 3.11 8.08 -2.39 -0.02 3.09 16 41 H 0.09 2.31 7.38 -2.39 -0.02 2.29 16 42 H 0.39 15.78 5.76 -92.71 -0.53 15.25 16 43 H 0.28 15.61 8.31 -92.71 -0.77 14.83 16 44 H 0.11 1.75 8.14 -2.39 -0.02 1.74 16 45 H 0.08 1.42 7.88 -2.39 -0.02 1.40 16 46 H 0.10 2.38 6.24 -2.39 -0.01 2.37 16 47 H 0.12 0.89 6.31 -2.39 -0.02 0.88 16 48 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 50 H 0.10 1.37 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -84.11 407.19 -0.75 -84.86 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -0.43 Total: 37.74 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 6.50 Total: 6.02 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -8.62 Total: -119.76 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -0.10 Total: -50.49 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.90 Total: 41.64 kcal Total: -84.11 -0.75 -84.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276350363.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.167 kcal (2) G-P(sol) polarization free energy of solvation -84.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds