Wall clock time and date at job start Tue Mar 31 2020 18:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32999 * 120.00024 * 2 1 4 4 C 1.47096 * 119.99876 * 172.95364 * 3 2 1 5 5 O 1.21606 * 120.00584 * 354.03624 * 4 3 2 6 6 N 1.34786 * 119.99853 * 174.03694 * 4 3 2 7 7 C 1.46494 * 120.00027 * 179.72713 * 6 4 3 8 8 H 1.08996 * 109.47548 * 35.27329 * 7 6 4 9 9 C 1.53002 * 109.46930 * 275.27411 * 7 6 4 10 10 C 1.53001 * 109.47358 * 155.27645 * 7 6 4 11 11 C 1.53933 * 113.73080 * 276.72632 * 10 7 6 12 12 N 1.47961 * 86.18156 * 221.91689 * 11 10 7 13 13 C 1.46902 * 111.00106 * 137.58016 * 12 11 10 14 14 C 1.50702 * 109.47054 * 90.64094 * 13 12 11 15 15 O 1.21297 * 119.99932 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00094 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99810 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00371 * 0.02562 * 17 16 14 19 19 C 1.38946 * 119.99809 * 180.02562 * 17 16 14 20 20 N 1.31412 * 119.99957 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00216 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47152 * 89.99713 * 21 19 17 23 23 H 1.48501 * 109.47409 * 210.00181 * 21 19 17 24 24 H 1.48500 * 109.47229 * 330.00060 * 21 19 17 25 25 C 1.47961 * 90.76164 * 24.69209 * 12 11 10 26 26 C 1.50694 * 120.00094 * 179.97438 * 2 1 3 27 27 C 1.52997 * 117.49869 * 1.68753 * 26 2 1 28 28 C 1.52999 * 117.50069 * 293.02639 * 26 2 1 29 29 H 1.09000 * 109.46806 * 90.00044 * 1 2 3 30 30 H 1.09000 * 109.46999 * 209.99890 * 1 2 3 31 31 H 1.09004 * 109.47033 * 330.00369 * 1 2 3 32 32 H 1.08000 * 119.99912 * 352.95993 * 3 2 1 33 33 H 0.96996 * 119.99526 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.47169 * 60.00610 * 9 7 6 35 35 H 1.09005 * 109.46998 * 179.97438 * 9 7 6 36 36 H 1.09000 * 109.47385 * 299.99698 * 9 7 6 37 37 H 1.08997 * 112.93923 * 48.43042 * 10 7 6 38 38 H 1.09004 * 113.76551 * 336.23583 * 11 10 7 39 39 H 1.09005 * 113.76178 * 107.60185 * 11 10 7 40 40 H 1.08995 * 109.47542 * 210.64628 * 13 12 11 41 41 H 1.09004 * 109.46722 * 330.65094 * 13 12 11 42 42 H 0.97000 * 120.00106 * 0.02562 * 16 14 13 43 43 H 0.97002 * 120.00054 * 179.97438 * 20 19 17 44 44 H 1.09000 * 113.76196 * 220.99225 * 25 12 11 45 45 H 1.08998 * 113.86043 * 89.63290 * 25 12 11 46 46 H 1.09008 * 115.54999 * 147.35879 * 26 2 1 47 47 H 1.09002 * 117.50008 * 0.02562 * 27 26 2 48 48 H 1.09002 * 117.49686 * 145.02034 * 27 26 2 49 49 H 1.08993 * 117.50245 * 214.97791 * 28 26 2 50 50 H 1.08996 * 117.49766 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6346 1.1566 0.1563 5 8 4.2243 0.1199 0.3937 6 7 4.3214 2.3101 0.0363 7 6 5.7774 2.3159 0.1979 8 1 6.1913 1.3911 -0.2039 9 6 6.1252 2.4271 1.6837 10 6 6.3694 3.5090 -0.5551 11 6 6.5882 3.2475 -2.0562 12 7 7.8792 3.9509 -1.8895 13 6 8.9539 3.2572 -2.6120 14 6 9.0569 3.8094 -4.0104 15 8 8.3089 4.6942 -4.3697 16 7 9.9800 3.3202 -4.8618 17 6 10.0740 3.8230 -6.1338 18 1 9.4086 4.6113 -6.4535 19 6 11.0254 3.3183 -7.0118 20 7 11.1158 3.8005 -8.2308 21 14 12.1758 1.9543 -6.4592 22 1 11.5610 0.6362 -6.7594 23 1 13.4680 2.0737 -7.1812 24 1 12.4130 2.0684 -4.9977 25 6 7.9019 3.6096 -0.4500 26 6 2.2605 -1.3050 0.0006 27 6 1.4389 -2.5951 -0.0388 28 6 2.1540 -2.1817 1.2500 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6381 2.0836 -0.1146 33 1 3.8511 3.1371 -0.1527 34 1 5.7036 1.5771 2.2201 35 1 7.2086 2.4310 1.8039 36 1 5.7114 3.3520 2.0855 37 1 5.8527 4.4447 -0.3419 38 1 6.6925 2.1920 -2.3076 39 1 5.8826 3.7716 -2.7008 40 1 9.8990 3.4091 -2.0908 41 1 8.7314 2.1911 -2.6579 42 1 10.5779 2.6124 -4.5746 43 1 11.7802 3.4484 -8.8436 44 1 8.2458 4.4230 0.1889 45 1 8.3901 2.6603 -0.2296 46 1 3.2128 -1.2983 -0.5299 47 1 0.3534 -2.4999 -0.0656 48 1 1.8509 -3.4373 -0.5949 49 1 3.0360 -2.7521 1.5412 50 1 1.5393 -1.8144 2.0717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276350364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:42 Heat of formation + Delta-G solvation = 11.411017 kcal Electronic energy + Delta-G solvation = -28401.394095 eV Core-core repulsion = 24431.268274 eV Total energy + Delta-G solvation = -3970.125821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.61622 -39.76658 -38.15711 -37.76492 -35.35693 -33.89760 -33.73167 -31.74994 -31.49244 -29.60426 -28.27406 -26.33907 -25.62403 -24.35758 -23.55169 -22.60893 -21.95397 -20.80494 -19.93559 -19.35106 -18.77138 -18.21817 -17.28440 -16.70963 -16.11235 -15.88190 -15.35774 -15.32009 -14.90853 -14.79705 -14.70624 -14.24886 -13.93422 -13.57364 -13.47965 -13.30817 -13.21643 -13.07511 -12.74217 -12.65886 -12.61479 -12.42749 -12.17227 -12.00126 -11.79206 -11.61406 -11.48208 -11.16875 -11.09384 -10.95428 -10.74658 -10.67706 -10.61262 -10.57347 -9.94714 -9.71878 -9.53057 -9.32887 -9.07524 -8.76668 -8.25795 -8.14119 -6.27990 -3.79124 1.03686 3.00506 3.04574 3.08636 3.09105 3.16648 3.69974 3.77922 3.87774 4.12801 4.21881 4.28613 4.45847 4.52646 4.69191 4.73670 4.76575 4.83084 4.98783 5.01274 5.11206 5.13968 5.18700 5.19135 5.21624 5.32896 5.34941 5.38313 5.45352 5.50665 5.58538 5.58741 5.60809 5.66332 5.74710 5.84152 5.88981 5.93904 5.97487 6.00733 6.03686 6.15641 6.26348 6.38901 6.51799 7.09946 7.38563 7.61724 8.12251 8.17792 8.64209 8.98991 9.46166 9.88426 10.85337 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.002114 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.568617 B =13240.091729 C =14073.525801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.001 4.001 3 C -0.229 4.229 4 C 0.547 3.453 5 O -0.538 6.538 6 N -0.721 5.721 7 C 0.152 3.848 8 H 0.087 0.913 9 C -0.161 4.161 10 C -0.125 4.125 11 C 0.017 3.983 12 N -0.449 5.449 13 C 0.007 3.993 14 C 0.456 3.544 15 O -0.557 6.557 16 N -0.595 5.595 17 C -0.303 4.303 18 H 0.119 0.881 19 C 0.040 3.960 20 N -0.883 5.883 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 C 0.010 3.990 26 C -0.119 4.119 27 C -0.190 4.190 28 C -0.155 4.155 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.128 0.872 33 H 0.400 0.600 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.369 0.631 43 H 0.273 0.727 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.134 0.866 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.096 0.904 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.306 -9.584 22.842 30.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.003 4.003 3 C -0.250 4.250 4 C 0.337 3.663 5 O -0.418 6.418 6 N -0.372 5.372 7 C 0.047 3.953 8 H 0.105 0.895 9 C -0.219 4.219 10 C -0.144 4.144 11 C -0.112 4.112 12 N -0.171 5.171 13 C -0.126 4.126 14 C 0.241 3.759 15 O -0.438 6.438 16 N -0.235 5.235 17 C -0.432 4.432 18 H 0.137 0.863 19 C -0.163 4.163 20 N -0.523 5.523 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.120 4.120 26 C -0.137 4.137 27 C -0.227 4.227 28 C -0.192 4.192 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.146 0.854 33 H 0.234 0.766 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.202 0.798 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.152 0.848 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -18.178 -9.020 22.313 30.161 hybrid contribution 0.944 -1.425 0.265 1.729 sum -17.234 -10.444 22.578 30.263 Atomic orbital electron populations 1.21031 0.91150 1.03275 1.03172 1.21821 0.95208 0.93405 0.89899 1.22350 0.93444 0.98715 1.10497 1.18530 0.87810 0.83352 0.76643 1.90746 1.71019 1.31396 1.48603 1.45975 1.07783 1.10462 1.72965 1.21005 0.79841 0.98874 0.95614 0.89466 1.22138 1.01983 1.02137 0.95642 1.23311 0.96622 0.98586 0.95887 1.24002 0.93763 0.97951 0.95439 1.68384 1.01335 1.45466 1.01916 1.22522 0.97201 0.96791 0.96038 1.19601 0.84019 0.86241 0.86023 1.90559 1.43995 1.31879 1.77356 1.42231 1.32477 1.35682 1.13107 1.19421 1.18346 1.19749 0.85636 0.86337 1.25032 0.97718 0.98134 0.95382 1.69623 1.35334 1.42186 1.05203 0.86674 0.81402 0.82611 0.78711 1.19687 1.20184 1.19530 1.23964 0.94496 1.00913 0.92601 1.21488 1.00683 0.87892 1.03610 1.23154 0.99052 0.98678 1.01803 1.22799 1.02661 1.02532 0.91245 0.90127 0.90775 0.90914 0.85435 0.76553 0.92205 0.91478 0.92399 0.87760 0.91409 0.89004 0.89303 0.92357 0.79805 0.91675 0.89040 0.91210 0.84844 0.88638 0.88585 0.88525 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.68 9.49 36.01 0.34 -0.34 16 2 C 0.00 -0.01 5.80 -101.17 -0.59 -0.60 16 3 C -0.23 -1.91 9.62 -37.81 -0.36 -2.28 16 4 C 0.55 5.80 7.63 -12.66 -0.10 5.71 16 5 O -0.54 -7.30 12.98 5.27 0.07 -7.23 16 6 N -0.72 -6.38 5.07 -54.99 -0.28 -6.66 16 7 C 0.15 1.44 2.41 -67.93 -0.16 1.28 16 8 H 0.09 1.01 7.38 -51.93 -0.38 0.63 16 9 C -0.16 -1.37 9.28 37.16 0.34 -1.02 16 10 C -0.12 -1.27 3.49 -89.69 -0.31 -1.58 16 11 C 0.02 0.24 7.51 -2.77 -0.02 0.22 16 12 N -0.45 -7.12 5.65 -239.73 -1.35 -8.48 16 13 C 0.01 0.11 5.28 -4.97 -0.03 0.09 16 14 C 0.46 10.70 7.83 -10.99 -0.09 10.62 16 15 O -0.56 -15.48 16.01 5.54 0.09 -15.39 16 16 N -0.59 -14.56 5.09 -10.96 -0.06 -14.62 16 17 C -0.30 -8.75 10.16 -14.93 -0.15 -8.90 16 18 H 0.12 3.91 7.39 -52.49 -0.39 3.52 16 19 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 20 N -0.88 -26.19 13.96 55.50 0.77 -25.42 16 21 Si 0.88 19.74 27.74 -169.99 -4.71 15.02 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 25 C 0.01 0.11 6.57 -2.76 -0.02 0.09 16 26 C -0.12 -1.13 4.34 -91.78 -0.40 -1.52 16 27 C -0.19 -1.40 9.79 -26.69 -0.26 -1.67 16 28 C -0.16 -1.30 10.24 -26.69 -0.27 -1.57 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.34 6.37 -51.93 -0.33 0.01 16 31 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.40 2.66 8.59 -40.82 -0.35 2.31 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.52 7.43 -51.93 -0.39 0.13 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 0.93 7.29 -51.93 -0.38 0.56 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.09 1.34 8.08 -51.93 -0.42 0.92 16 41 H 0.06 0.88 7.38 -51.93 -0.38 0.50 16 42 H 0.37 7.94 5.76 -40.82 -0.24 7.70 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 0.69 7.85 -51.93 -0.41 0.29 16 46 H 0.13 1.60 6.24 -51.92 -0.32 1.28 16 47 H 0.10 0.56 6.31 -51.93 -0.33 0.24 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 405.95 15.07 6.12 6.12 Total: -1.00 -35.48 405.95 -9.65 -45.14 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -8.13 Total: 11.97 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -2.17 Total: -0.46 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.91 Total: -55.17 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.16 Total: -22.62 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.71 Total: 15.02 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.48 -9.65 -45.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276350364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.548 kcal (2) G-P(sol) polarization free energy of solvation -35.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds