Wall clock time and date at job start Tue Mar 31 2020 18:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32999 * 120.00024 * 2 1 4 4 C 1.47096 * 119.99876 * 172.95364 * 3 2 1 5 5 O 1.21606 * 120.00584 * 354.03624 * 4 3 2 6 6 N 1.34786 * 119.99853 * 174.03694 * 4 3 2 7 7 C 1.46494 * 120.00027 * 179.72713 * 6 4 3 8 8 H 1.08996 * 109.47548 * 35.27329 * 7 6 4 9 9 C 1.53002 * 109.46930 * 275.27411 * 7 6 4 10 10 C 1.53001 * 109.47358 * 155.27645 * 7 6 4 11 11 C 1.53933 * 113.73080 * 276.72632 * 10 7 6 12 12 N 1.47961 * 86.18156 * 221.91689 * 11 10 7 13 13 C 1.46902 * 111.00106 * 137.58016 * 12 11 10 14 14 C 1.50702 * 109.47054 * 90.64094 * 13 12 11 15 15 O 1.21297 * 119.99932 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00094 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99810 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00371 * 0.02562 * 17 16 14 19 19 C 1.38946 * 119.99809 * 180.02562 * 17 16 14 20 20 N 1.31412 * 119.99957 * 180.02562 * 19 17 16 21 21 Si 1.86795 * 120.00216 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47152 * 89.99713 * 21 19 17 23 23 H 1.48501 * 109.47409 * 210.00181 * 21 19 17 24 24 H 1.48500 * 109.47229 * 330.00060 * 21 19 17 25 25 C 1.47961 * 90.76164 * 24.69209 * 12 11 10 26 26 C 1.50694 * 120.00094 * 179.97438 * 2 1 3 27 27 C 1.52997 * 117.49869 * 1.68753 * 26 2 1 28 28 C 1.52999 * 117.50069 * 293.02639 * 26 2 1 29 29 H 1.09000 * 109.46806 * 90.00044 * 1 2 3 30 30 H 1.09000 * 109.46999 * 209.99890 * 1 2 3 31 31 H 1.09004 * 109.47033 * 330.00369 * 1 2 3 32 32 H 1.08000 * 119.99912 * 352.95993 * 3 2 1 33 33 H 0.96996 * 119.99526 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.47169 * 60.00610 * 9 7 6 35 35 H 1.09005 * 109.46998 * 179.97438 * 9 7 6 36 36 H 1.09000 * 109.47385 * 299.99698 * 9 7 6 37 37 H 1.08997 * 112.93923 * 48.43042 * 10 7 6 38 38 H 1.09004 * 113.76551 * 336.23583 * 11 10 7 39 39 H 1.09005 * 113.76178 * 107.60185 * 11 10 7 40 40 H 1.08995 * 109.47542 * 210.64628 * 13 12 11 41 41 H 1.09004 * 109.46722 * 330.65094 * 13 12 11 42 42 H 0.97000 * 120.00106 * 0.02562 * 16 14 13 43 43 H 0.97002 * 120.00054 * 179.97438 * 20 19 17 44 44 H 1.09000 * 113.76196 * 220.99225 * 25 12 11 45 45 H 1.08998 * 113.86043 * 89.63290 * 25 12 11 46 46 H 1.09008 * 115.54999 * 147.35879 * 26 2 1 47 47 H 1.09002 * 117.50008 * 0.02562 * 27 26 2 48 48 H 1.09002 * 117.49686 * 145.02034 * 27 26 2 49 49 H 1.08993 * 117.50245 * 214.97791 * 28 26 2 50 50 H 1.08996 * 117.49766 * 359.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6346 1.1566 0.1563 5 8 4.2243 0.1199 0.3937 6 7 4.3214 2.3101 0.0363 7 6 5.7774 2.3159 0.1979 8 1 6.1913 1.3911 -0.2039 9 6 6.1252 2.4271 1.6837 10 6 6.3694 3.5090 -0.5551 11 6 6.5882 3.2475 -2.0562 12 7 7.8792 3.9509 -1.8895 13 6 8.9539 3.2572 -2.6120 14 6 9.0569 3.8094 -4.0104 15 8 8.3089 4.6942 -4.3697 16 7 9.9800 3.3202 -4.8618 17 6 10.0740 3.8230 -6.1338 18 1 9.4086 4.6113 -6.4535 19 6 11.0254 3.3183 -7.0118 20 7 11.1158 3.8005 -8.2308 21 14 12.1758 1.9543 -6.4592 22 1 11.5610 0.6362 -6.7594 23 1 13.4680 2.0737 -7.1812 24 1 12.4130 2.0684 -4.9977 25 6 7.9019 3.6096 -0.4500 26 6 2.2605 -1.3050 0.0006 27 6 1.4389 -2.5951 -0.0388 28 6 2.1540 -2.1817 1.2500 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6381 2.0836 -0.1146 33 1 3.8511 3.1371 -0.1527 34 1 5.7036 1.5771 2.2201 35 1 7.2086 2.4310 1.8039 36 1 5.7114 3.3520 2.0855 37 1 5.8527 4.4447 -0.3419 38 1 6.6925 2.1920 -2.3076 39 1 5.8826 3.7716 -2.7008 40 1 9.8990 3.4091 -2.0908 41 1 8.7314 2.1911 -2.6579 42 1 10.5779 2.6124 -4.5746 43 1 11.7802 3.4484 -8.8436 44 1 8.2458 4.4230 0.1889 45 1 8.3901 2.6603 -0.2296 46 1 3.2128 -1.2983 -0.5299 47 1 0.3534 -2.4999 -0.0656 48 1 1.8509 -3.4373 -0.5949 49 1 3.0360 -2.7521 1.5412 50 1 1.5393 -1.8144 2.0717 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276350364.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:41 Heat of formation + Delta-G solvation = -15.834237 kcal Electronic energy + Delta-G solvation = -28402.575538 eV Core-core repulsion = 24431.268274 eV Total energy + Delta-G solvation = -3971.307264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59031 -40.72030 -39.76058 -38.62830 -36.28995 -35.92444 -34.34442 -33.77937 -32.53625 -30.72647 -28.80354 -27.63848 -26.90152 -25.58311 -24.52130 -23.25670 -22.88145 -21.61517 -21.25229 -20.82277 -20.27047 -19.40139 -18.03420 -17.80323 -17.53346 -16.85030 -16.66236 -16.46248 -16.33917 -15.86825 -15.60301 -15.43025 -14.99078 -14.86394 -14.47743 -14.41643 -14.19115 -13.99469 -13.92510 -13.89712 -13.69729 -13.35282 -13.12905 -13.04393 -12.75544 -12.69392 -12.45046 -12.43191 -12.19105 -12.00428 -11.81805 -11.80103 -11.68594 -11.62378 -11.52477 -11.29028 -10.50671 -10.47088 -10.26361 -10.10740 -9.74586 -9.58756 -8.43075 -6.03892 0.39277 1.27860 1.33294 1.42227 1.94465 2.20933 2.27534 2.35586 2.62857 3.06147 3.12337 3.18992 3.41697 3.62583 3.64633 3.86981 4.03038 4.06322 4.14248 4.17777 4.21925 4.25438 4.32581 4.37693 4.43897 4.46087 4.46661 4.52480 4.66736 4.74044 4.76067 4.81039 4.82693 4.84677 4.95817 4.99478 5.10266 5.20837 5.23506 5.25992 5.33955 5.41819 5.45838 5.51962 5.64152 5.66409 5.89636 6.02766 6.58260 6.68989 6.86734 7.37877 7.38153 7.96143 8.74735 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.002114 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.568617 B =13240.091729 C =14073.525801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.001 4.001 3 C -0.242 4.242 4 C 0.538 3.462 5 O -0.575 6.575 6 N -0.715 5.715 7 C 0.158 3.842 8 H 0.066 0.934 9 C -0.153 4.153 10 C -0.099 4.099 11 C 0.009 3.991 12 N -0.486 5.486 13 C 0.019 3.981 14 C 0.452 3.548 15 O -0.609 6.609 16 N -0.594 5.594 17 C -0.328 4.328 18 H 0.054 0.946 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.965 3.035 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.232 1.232 25 C 0.018 3.982 26 C -0.140 4.140 27 C -0.174 4.174 28 C -0.159 4.159 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.155 0.845 33 H 0.412 0.588 34 H 0.043 0.957 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.119 0.881 41 H 0.085 0.915 42 H 0.389 0.611 43 H 0.279 0.721 44 H 0.108 0.892 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.116 0.884 48 H 0.096 0.904 49 H 0.086 0.914 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.336 -11.229 25.869 33.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.003 4.003 3 C -0.262 4.262 4 C 0.329 3.671 5 O -0.457 6.457 6 N -0.366 5.366 7 C 0.053 3.947 8 H 0.084 0.916 9 C -0.211 4.211 10 C -0.119 4.119 11 C -0.120 4.120 12 N -0.208 5.208 13 C -0.113 4.113 14 C 0.239 3.761 15 O -0.493 6.493 16 N -0.237 5.237 17 C -0.457 4.457 18 H 0.072 0.928 19 C -0.215 4.215 20 N -0.575 5.575 21 Si 0.785 3.215 22 H -0.183 1.183 23 H -0.198 1.198 24 H -0.155 1.155 25 C -0.110 4.110 26 C -0.158 4.158 27 C -0.210 4.210 28 C -0.196 4.196 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.172 0.828 33 H 0.248 0.752 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.137 0.863 41 H 0.103 0.897 42 H 0.224 0.776 43 H 0.089 0.911 44 H 0.126 0.874 45 H 0.107 0.893 46 H 0.119 0.881 47 H 0.135 0.865 48 H 0.114 0.886 49 H 0.105 0.895 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.221 -10.644 25.370 33.000 hybrid contribution 0.868 -0.833 -0.738 1.411 sum -17.353 -11.477 24.632 32.243 Atomic orbital electron populations 1.21089 0.88708 1.04470 1.04039 1.22110 0.96829 0.92551 0.88819 1.22516 0.92207 1.00104 1.11417 1.18996 0.88898 0.83087 0.76105 1.90734 1.71907 1.32661 1.50404 1.45931 1.07619 1.10692 1.72318 1.20867 0.80122 0.97478 0.96260 0.91554 1.22070 1.02776 1.02080 0.94217 1.23125 0.96672 0.99176 0.92883 1.24007 0.92956 0.97271 0.97742 1.68338 1.01401 1.46442 1.04647 1.22459 0.99408 0.97727 0.91669 1.20935 0.82077 0.84873 0.88173 1.90530 1.45642 1.34178 1.78964 1.42074 1.33526 1.36326 1.11739 1.18993 1.18644 1.19699 0.88393 0.92806 1.26124 0.99311 1.01178 0.94873 1.69805 1.36515 1.44222 1.06969 0.85363 0.77835 0.77924 0.80394 1.18258 1.19789 1.15506 1.24080 0.94897 1.02451 0.89596 1.21392 1.00295 0.89730 1.04340 1.23237 0.99959 0.97322 1.00522 1.22828 1.02759 1.02326 0.91675 0.89228 0.89899 0.89430 0.82792 0.75177 0.93810 0.90245 0.91039 0.86550 0.91591 0.91409 0.86300 0.89742 0.77581 0.91125 0.87375 0.89288 0.88113 0.86548 0.88550 0.89506 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 9.49 71.24 0.68 -0.34 16 2 C 0.00 -0.02 5.80 -17.62 -0.10 -0.12 16 3 C -0.24 -3.79 9.62 23.43 0.23 -3.57 16 4 C 0.54 11.34 7.63 86.57 0.66 12.00 16 5 O -0.58 -16.08 12.98 -4.05 -0.05 -16.13 16 6 N -0.71 -11.98 5.07 -446.15 -2.26 -14.24 16 7 C 0.16 2.78 2.41 44.99 0.11 2.89 16 8 H 0.07 1.49 7.38 -2.39 -0.02 1.48 16 9 C -0.15 -2.27 9.28 71.98 0.67 -1.60 16 10 C -0.10 -1.82 3.49 -10.15 -0.04 -1.86 16 11 C 0.01 0.25 7.51 86.40 0.65 0.90 16 12 N -0.49 -14.68 5.65 -912.36 -5.15 -19.83 16 13 C 0.02 0.61 5.28 85.56 0.45 1.06 16 14 C 0.45 21.39 7.83 87.66 0.69 22.07 16 15 O -0.61 -35.41 16.01 -3.08 -0.05 -35.46 16 16 N -0.59 -29.12 5.09 -306.98 -1.56 -30.69 16 17 C -0.33 -19.78 10.16 84.04 0.85 -18.92 16 18 H 0.05 3.86 7.39 -2.91 -0.02 3.83 16 19 C -0.02 -0.93 5.50 84.93 0.47 -0.46 16 20 N -0.93 -57.36 13.96 21.66 0.30 -57.05 16 21 Si 0.97 39.74 27.74 68.60 1.90 41.65 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 H -0.23 -8.07 6.52 99.48 0.65 -7.42 16 25 C 0.02 0.35 6.57 86.41 0.57 0.92 16 26 C -0.14 -2.65 4.34 -11.54 -0.05 -2.70 16 27 C -0.17 -2.38 9.79 30.62 0.30 -2.08 16 28 C -0.16 -2.60 10.24 30.62 0.31 -2.29 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.53 6.37 -2.39 -0.02 0.51 16 31 H 0.09 0.47 8.07 -2.39 -0.02 0.45 16 32 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.41 4.87 8.59 -92.71 -0.80 4.08 16 34 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.98 7.43 -2.38 -0.02 0.97 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.07 1.80 7.29 -2.39 -0.02 1.78 16 39 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 40 H 0.12 3.12 8.08 -2.39 -0.02 3.10 16 41 H 0.08 2.29 7.38 -2.38 -0.02 2.28 16 42 H 0.39 15.79 5.76 -92.71 -0.53 15.25 16 43 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 44 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 45 H 0.09 1.40 7.85 -2.39 -0.02 1.39 16 46 H 0.10 2.60 6.24 -2.38 -0.01 2.58 16 47 H 0.12 1.10 6.31 -2.39 -0.02 1.08 16 48 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -84.95 405.95 -0.87 -85.82 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: -0.43 Total: 40.05 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: 6.44 Total: 5.89 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -8.68 Total: -121.81 kcal Atomic # 8 Polarization: -51.50 SS G_CDS: -0.10 Total: -51.60 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.90 Total: 41.65 kcal Total: -84.95 -0.87 -85.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276350364.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.985 kcal (2) G-P(sol) polarization free energy of solvation -84.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds