Wall clock time and date at job start Tue Mar 31 2020 18:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33002 * 119.99759 * 2 1 4 4 C 1.47096 * 120.00121 * 7.22776 * 3 2 1 5 5 O 1.21618 * 119.99944 * 6.10509 * 4 3 2 6 6 N 1.34780 * 120.00068 * 186.10563 * 4 3 2 7 7 C 1.46497 * 119.99713 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.47340 * 324.99278 * 7 6 4 9 9 C 1.53001 * 109.47437 * 84.99981 * 7 6 4 10 10 C 1.53003 * 109.46585 * 204.99424 * 7 6 4 11 11 C 1.53942 * 113.73136 * 159.12674 * 10 7 6 12 12 N 1.47958 * 86.18276 * 221.92108 * 11 10 7 13 13 C 1.46896 * 111.00137 * 137.58062 * 12 11 10 14 14 C 1.50703 * 109.46878 * 90.64332 * 13 12 11 15 15 O 1.21290 * 119.99905 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00171 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00265 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99634 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99916 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00295 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99750 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47552 * 89.99662 * 21 19 17 23 23 H 1.48504 * 109.46773 * 209.99715 * 21 19 17 24 24 H 1.48501 * 109.47199 * 329.99295 * 21 19 17 25 25 C 1.47967 * 90.76276 * 24.69322 * 12 11 10 26 26 C 1.50697 * 120.00118 * 179.97438 * 2 1 3 27 27 C 1.52998 * 117.50051 * 8.62460 * 26 2 1 28 28 C 1.52996 * 60.00126 * 252.51189 * 27 26 2 29 29 H 1.09000 * 109.47484 * 275.43035 * 1 2 3 30 30 H 1.09000 * 109.47141 * 35.42999 * 1 2 3 31 31 H 1.09004 * 109.47064 * 155.42964 * 1 2 3 32 32 H 1.07992 * 119.99633 * 187.23062 * 3 2 1 33 33 H 0.96996 * 119.99953 * 359.97438 * 6 4 3 34 34 H 1.09004 * 109.46778 * 181.76113 * 9 7 6 35 35 H 1.09004 * 109.46924 * 301.75749 * 9 7 6 36 36 H 1.08997 * 109.47168 * 61.75973 * 9 7 6 37 37 H 1.08994 * 112.94201 * 290.83155 * 10 7 6 38 38 H 1.09000 * 113.76059 * 336.24068 * 11 10 7 39 39 H 1.09004 * 113.75664 * 107.60629 * 11 10 7 40 40 H 1.08998 * 109.48034 * 210.64243 * 13 12 11 41 41 H 1.08997 * 109.47283 * 330.65007 * 13 12 11 42 42 H 0.97007 * 120.00214 * 0.02562 * 16 14 13 43 43 H 0.96996 * 120.00111 * 179.97438 * 20 19 17 44 44 H 1.09002 * 113.75774 * 220.99741 * 25 12 11 45 45 H 1.08996 * 113.76170 * 89.62521 * 25 12 11 46 46 H 1.09001 * 115.54827 * 154.33000 * 26 2 1 47 47 H 1.09007 * 117.49543 * 0.02562 * 27 26 2 48 48 H 1.08993 * 117.50165 * 145.01681 * 27 26 2 49 49 H 1.08998 * 117.49481 * 252.51049 * 28 27 26 50 50 H 1.08996 * 117.52342 * 107.47800 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1519 0.0000 4 6 1.4452 2.4207 0.1603 5 8 0.2536 2.4124 0.4035 6 7 2.0998 3.5924 0.0375 7 6 1.3761 4.8560 0.1977 8 1 0.3662 4.7491 -0.1985 9 6 1.3058 5.2189 1.6824 10 6 2.1081 5.9630 -0.5637 11 6 1.2212 7.1760 -0.8978 12 7 1.8770 7.1652 -2.2241 13 6 0.8994 7.3924 -3.2967 14 6 0.7958 8.8694 -3.5773 15 8 1.4698 9.6554 -2.9456 16 7 -0.0464 9.3170 -4.5296 17 6 -0.1402 10.6607 -4.7853 18 1 0.4605 11.3605 -4.2234 19 6 -1.0090 11.1221 -5.7666 20 7 -1.7403 10.2706 -6.4500 21 14 -1.1362 12.9528 -6.1155 22 1 -0.1512 13.3271 -7.1619 23 1 -2.5070 13.2723 -6.5891 24 1 -0.8518 13.7145 -4.8729 25 6 2.1836 5.7246 -2.0827 26 6 2.2605 -1.3051 0.0006 27 6 1.4518 -2.5879 -0.2024 28 6 2.0260 -2.2557 1.1763 29 1 -0.3634 0.0973 1.0230 30 1 -0.3633 0.8374 -0.5957 31 1 -0.3633 -0.9346 -0.4273 32 1 3.2454 1.1556 -0.1177 33 1 3.0502 3.5990 -0.1561 34 1 0.7403 6.1428 1.8042 35 1 0.8120 4.4159 2.2297 36 1 2.3148 5.3565 2.0710 37 1 3.0646 6.2276 -0.1130 38 1 0.1565 6.9453 -0.9325 39 1 1.4466 8.0617 -0.3037 40 1 1.2223 6.8729 -4.1988 41 1 -0.0743 7.0123 -2.9874 42 1 -0.5863 8.6885 -5.0341 43 1 -2.3470 10.5928 -7.1348 44 1 3.1780 5.4506 -2.4352 45 1 1.4004 5.0694 -2.4638 46 1 3.2632 -1.2692 -0.4254 47 1 0.3746 -2.4878 -0.3367 48 1 1.9222 -3.3962 -0.7621 49 1 2.8743 -2.8455 1.5235 50 1 1.3271 -1.9369 1.9496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276350365.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:45 Heat of formation + Delta-G solvation = 3.735958 kcal Electronic energy + Delta-G solvation = -28117.875233 eV Core-core repulsion = 24147.416597 eV Total energy + Delta-G solvation = -3970.458636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.58344 -39.69125 -38.32608 -37.70389 -35.47747 -33.84103 -33.46000 -31.64823 -31.14434 -29.47974 -27.94851 -26.03220 -25.74979 -24.71581 -23.88642 -22.86633 -21.83209 -20.69359 -19.80245 -19.21725 -18.69844 -17.83104 -17.20857 -16.75750 -16.17333 -15.87574 -15.48366 -15.26992 -15.01423 -14.76717 -14.55262 -14.22324 -13.81397 -13.69733 -13.58830 -13.46127 -13.11468 -12.93741 -12.61551 -12.53156 -12.33598 -12.27292 -12.01231 -11.86254 -11.60599 -11.53032 -11.31215 -11.27701 -11.04567 -10.92718 -10.86412 -10.79098 -10.53758 -10.36477 -10.17402 -9.75962 -9.46175 -9.40024 -9.06035 -8.67307 -8.12668 -7.91847 -6.37731 -3.78426 1.02303 2.97446 3.05346 3.20464 3.28566 3.34635 3.44981 3.92908 3.97688 4.10778 4.24732 4.36429 4.40442 4.42878 4.55523 4.58878 4.72352 4.89397 5.01880 5.07694 5.10644 5.18462 5.24020 5.30076 5.30874 5.38812 5.45366 5.49177 5.53380 5.57041 5.57662 5.62844 5.70525 5.71971 5.75138 5.78723 5.83353 5.97708 6.04117 6.17631 6.21151 6.27671 6.32190 6.38902 6.62427 7.21467 7.38308 7.58765 8.10324 8.10507 8.66662 9.22572 9.59289 10.11896 10.80233 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.001777 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.500357 B =15750.450365 C =16422.066753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.001 3.999 3 C -0.229 4.229 4 C 0.546 3.454 5 O -0.541 6.541 6 N -0.720 5.720 7 C 0.151 3.849 8 H 0.088 0.912 9 C -0.161 4.161 10 C -0.126 4.126 11 C 0.023 3.977 12 N -0.449 5.449 13 C 0.010 3.990 14 C 0.447 3.553 15 O -0.576 6.576 16 N -0.568 5.568 17 C -0.298 4.298 18 H 0.102 0.898 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.006 3.994 26 C -0.135 4.135 27 C -0.175 4.175 28 C -0.163 4.163 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.125 0.875 33 H 0.400 0.600 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.087 0.913 45 H 0.067 0.933 46 H 0.115 0.885 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.431 -25.620 13.946 30.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.001 4.001 3 C -0.250 4.250 4 C 0.336 3.664 5 O -0.421 6.421 6 N -0.370 5.370 7 C 0.046 3.954 8 H 0.106 0.894 9 C -0.219 4.219 10 C -0.145 4.145 11 C -0.107 4.107 12 N -0.171 5.171 13 C -0.122 4.122 14 C 0.232 3.768 15 O -0.459 6.459 16 N -0.205 5.205 17 C -0.427 4.427 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.195 1.195 25 C -0.124 4.124 26 C -0.153 4.153 27 C -0.212 4.212 28 C -0.200 4.200 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.143 0.857 33 H 0.234 0.766 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.087 0.913 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.075 0.925 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.105 0.895 45 H 0.086 0.914 46 H 0.133 0.867 47 H 0.122 0.878 48 H 0.117 0.883 49 H 0.118 0.882 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.405 -24.536 14.223 29.311 hybrid contribution -0.536 0.015 -0.731 0.907 sum 6.868 -24.522 13.492 28.819 Atomic orbital electron populations 1.21222 0.90725 1.02794 1.03645 1.21779 0.96195 0.92334 0.89754 1.22264 1.00206 0.91862 1.10690 1.18491 0.86897 0.84187 0.76802 1.90769 1.15122 1.87601 1.48610 1.45938 1.12894 1.05423 1.72770 1.21027 0.96571 0.81992 0.95791 0.89398 1.22135 1.02157 1.02071 0.95525 1.23350 1.00663 0.95225 0.95310 1.23922 0.96648 0.97701 0.92389 1.68376 1.32264 1.15333 1.01105 1.22479 0.95279 0.97582 0.96870 1.19697 0.84136 0.88968 0.83995 1.90515 1.46711 1.56814 1.51847 1.41883 1.37193 1.08479 1.32961 1.19698 1.22150 0.83011 1.17874 0.87974 1.25251 0.96238 1.00187 0.96349 1.69614 1.26129 1.34727 1.24032 0.85860 0.77324 0.82283 0.78821 1.20436 1.20970 1.19455 1.23963 1.02186 0.91543 0.94671 1.21281 1.00157 0.88863 1.05011 1.23131 1.00565 0.97793 0.99705 1.22977 1.03670 1.01591 0.91722 0.90363 0.88890 0.92341 0.85681 0.76605 0.91302 0.92257 0.92434 0.87764 0.91260 0.88807 0.89525 0.92466 0.77571 0.91943 0.89485 0.91450 0.86668 0.87815 0.88276 0.88175 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.21 36.00 0.30 -0.84 16 2 C 0.00 0.01 5.81 -101.17 -0.59 -0.58 16 3 C -0.23 -1.88 9.67 -37.81 -0.37 -2.24 16 4 C 0.55 5.72 7.58 -12.67 -0.10 5.62 16 5 O -0.54 -7.37 12.95 5.26 0.07 -7.30 16 6 N -0.72 -6.29 4.89 -54.99 -0.27 -6.56 16 7 C 0.15 1.52 2.32 -67.93 -0.16 1.36 16 8 H 0.09 1.07 7.42 -51.93 -0.39 0.68 16 9 C -0.16 -1.53 9.47 37.16 0.35 -1.18 16 10 C -0.13 -1.35 3.36 -89.68 -0.30 -1.66 16 11 C 0.02 0.33 7.49 -2.76 -0.02 0.31 16 12 N -0.45 -7.49 5.65 -239.70 -1.35 -8.84 16 13 C 0.01 0.18 5.28 -4.98 -0.03 0.16 16 14 C 0.45 10.93 7.83 -10.98 -0.09 10.84 16 15 O -0.58 -16.18 16.01 5.55 0.09 -16.09 16 16 N -0.57 -14.80 5.29 -10.96 -0.06 -14.86 16 17 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 18 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 19 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -25.01 13.05 55.50 0.72 -24.29 16 21 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C 0.01 0.07 7.33 -2.76 -0.02 0.05 16 26 C -0.14 -0.81 6.01 -91.77 -0.55 -1.36 16 27 C -0.18 -0.89 9.87 -26.73 -0.26 -1.16 16 28 C -0.16 -0.83 10.20 -26.73 -0.27 -1.10 16 29 H 0.08 0.74 8.04 -51.93 -0.42 0.32 16 30 H 0.09 1.03 6.13 -51.93 -0.32 0.71 16 31 H 0.06 0.41 5.78 -51.93 -0.30 0.11 16 32 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 33 H 0.40 2.56 8.59 -40.82 -0.35 2.21 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.07 0.97 7.33 -51.93 -0.38 0.59 16 39 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.09 1.46 8.08 -51.93 -0.42 1.04 16 41 H 0.06 0.96 7.38 -51.93 -0.38 0.57 16 42 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 43 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.07 0.80 7.88 -51.93 -0.41 0.39 16 46 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.53 6.02 -51.92 -0.31 0.22 16 48 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 409.78 15.07 6.18 6.18 Total: -1.00 -34.01 409.78 -10.15 -44.16 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -8.16 Total: 11.16 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -2.34 Total: 0.06 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.96 Total: -54.55 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: 0.16 Total: -23.39 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.01 -10.15 -44.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276350365.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.892 kcal (2) G-P(sol) polarization free energy of solvation -34.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds