Wall clock time and date at job start Tue Mar 31 2020 18:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33002 * 119.99759 * 2 1 4 4 C 1.47096 * 120.00121 * 7.22776 * 3 2 1 5 5 O 1.21618 * 119.99944 * 6.10509 * 4 3 2 6 6 N 1.34780 * 120.00068 * 186.10563 * 4 3 2 7 7 C 1.46497 * 119.99713 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.47340 * 324.99278 * 7 6 4 9 9 C 1.53001 * 109.47437 * 84.99981 * 7 6 4 10 10 C 1.53003 * 109.46585 * 204.99424 * 7 6 4 11 11 C 1.53942 * 113.73136 * 159.12674 * 10 7 6 12 12 N 1.47958 * 86.18276 * 221.92108 * 11 10 7 13 13 C 1.46896 * 111.00137 * 137.58062 * 12 11 10 14 14 C 1.50703 * 109.46878 * 90.64332 * 13 12 11 15 15 O 1.21290 * 119.99905 * 359.97438 * 14 13 12 16 16 N 1.34777 * 120.00171 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00265 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99634 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99916 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00295 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99750 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47552 * 89.99662 * 21 19 17 23 23 H 1.48504 * 109.46773 * 209.99715 * 21 19 17 24 24 H 1.48501 * 109.47199 * 329.99295 * 21 19 17 25 25 C 1.47967 * 90.76276 * 24.69322 * 12 11 10 26 26 C 1.50697 * 120.00118 * 179.97438 * 2 1 3 27 27 C 1.52998 * 117.50051 * 8.62460 * 26 2 1 28 28 C 1.52996 * 60.00126 * 252.51189 * 27 26 2 29 29 H 1.09000 * 109.47484 * 275.43035 * 1 2 3 30 30 H 1.09000 * 109.47141 * 35.42999 * 1 2 3 31 31 H 1.09004 * 109.47064 * 155.42964 * 1 2 3 32 32 H 1.07992 * 119.99633 * 187.23062 * 3 2 1 33 33 H 0.96996 * 119.99953 * 359.97438 * 6 4 3 34 34 H 1.09004 * 109.46778 * 181.76113 * 9 7 6 35 35 H 1.09004 * 109.46924 * 301.75749 * 9 7 6 36 36 H 1.08997 * 109.47168 * 61.75973 * 9 7 6 37 37 H 1.08994 * 112.94201 * 290.83155 * 10 7 6 38 38 H 1.09000 * 113.76059 * 336.24068 * 11 10 7 39 39 H 1.09004 * 113.75664 * 107.60629 * 11 10 7 40 40 H 1.08998 * 109.48034 * 210.64243 * 13 12 11 41 41 H 1.08997 * 109.47283 * 330.65007 * 13 12 11 42 42 H 0.97007 * 120.00214 * 0.02562 * 16 14 13 43 43 H 0.96996 * 120.00111 * 179.97438 * 20 19 17 44 44 H 1.09002 * 113.75774 * 220.99741 * 25 12 11 45 45 H 1.08996 * 113.76170 * 89.62521 * 25 12 11 46 46 H 1.09001 * 115.54827 * 154.33000 * 26 2 1 47 47 H 1.09007 * 117.49543 * 0.02562 * 27 26 2 48 48 H 1.08993 * 117.50165 * 145.01681 * 27 26 2 49 49 H 1.08998 * 117.49481 * 252.51049 * 28 27 26 50 50 H 1.08996 * 117.52342 * 107.47800 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1519 0.0000 4 6 1.4452 2.4207 0.1603 5 8 0.2536 2.4124 0.4035 6 7 2.0998 3.5924 0.0375 7 6 1.3761 4.8560 0.1977 8 1 0.3662 4.7491 -0.1985 9 6 1.3058 5.2189 1.6824 10 6 2.1081 5.9630 -0.5637 11 6 1.2212 7.1760 -0.8978 12 7 1.8770 7.1652 -2.2241 13 6 0.8994 7.3924 -3.2967 14 6 0.7958 8.8694 -3.5773 15 8 1.4698 9.6554 -2.9456 16 7 -0.0464 9.3170 -4.5296 17 6 -0.1402 10.6607 -4.7853 18 1 0.4605 11.3605 -4.2234 19 6 -1.0090 11.1221 -5.7666 20 7 -1.7403 10.2706 -6.4500 21 14 -1.1362 12.9528 -6.1155 22 1 -0.1512 13.3271 -7.1619 23 1 -2.5070 13.2723 -6.5891 24 1 -0.8518 13.7145 -4.8729 25 6 2.1836 5.7246 -2.0827 26 6 2.2605 -1.3051 0.0006 27 6 1.4518 -2.5879 -0.2024 28 6 2.0260 -2.2557 1.1763 29 1 -0.3634 0.0973 1.0230 30 1 -0.3633 0.8374 -0.5957 31 1 -0.3633 -0.9346 -0.4273 32 1 3.2454 1.1556 -0.1177 33 1 3.0502 3.5990 -0.1561 34 1 0.7403 6.1428 1.8042 35 1 0.8120 4.4159 2.2297 36 1 2.3148 5.3565 2.0710 37 1 3.0646 6.2276 -0.1130 38 1 0.1565 6.9453 -0.9325 39 1 1.4466 8.0617 -0.3037 40 1 1.2223 6.8729 -4.1988 41 1 -0.0743 7.0123 -2.9874 42 1 -0.5863 8.6885 -5.0341 43 1 -2.3470 10.5928 -7.1348 44 1 3.1780 5.4506 -2.4352 45 1 1.4004 5.0694 -2.4638 46 1 3.2632 -1.2692 -0.4254 47 1 0.3746 -2.4878 -0.3367 48 1 1.9222 -3.3962 -0.7621 49 1 2.8743 -2.8455 1.5235 50 1 1.3271 -1.9369 1.9496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276350365.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:44 Heat of formation + Delta-G solvation = -20.499221 kcal Electronic energy + Delta-G solvation = -28118.926149 eV Core-core repulsion = 24147.416597 eV Total energy + Delta-G solvation = -3971.509552 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.59140 -40.67823 -39.62311 -38.77920 -36.41775 -35.89606 -34.08922 -33.32397 -32.53242 -30.71506 -28.64067 -27.44100 -27.04561 -25.80164 -25.00880 -23.24044 -22.80675 -21.50129 -21.00258 -20.73949 -19.91803 -19.36589 -17.95588 -17.85092 -17.44758 -16.82156 -16.66804 -16.51422 -16.30189 -15.82507 -15.71545 -15.61660 -15.23078 -14.86502 -14.62807 -14.23015 -14.07926 -13.99885 -13.85021 -13.70724 -13.51364 -13.35983 -12.98568 -12.92793 -12.82521 -12.52073 -12.44147 -12.42816 -12.14144 -12.08389 -11.88373 -11.84464 -11.79572 -11.59681 -11.50407 -11.31920 -10.57280 -10.39074 -10.15809 -10.02267 -9.74174 -9.60195 -8.47465 -5.96627 0.37559 1.37227 1.40427 1.53646 2.04351 2.22206 2.27895 2.32289 2.76616 3.01906 3.18396 3.34406 3.42895 3.59472 3.70681 3.90332 3.97933 4.07331 4.12846 4.16520 4.18074 4.21257 4.29069 4.36722 4.39824 4.47510 4.50499 4.53146 4.67396 4.75788 4.76180 4.79384 4.82394 4.87487 4.98871 5.00338 5.13434 5.15655 5.19130 5.26989 5.33065 5.38926 5.42134 5.54643 5.57666 5.62013 5.88973 6.07531 6.59514 6.68974 7.11883 7.36333 7.55153 8.11504 8.70069 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021776 B = 0.001777 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.500357 B =15750.450365 C =16422.066753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.001 4.001 3 C -0.234 4.234 4 C 0.540 3.460 5 O -0.580 6.580 6 N -0.708 5.708 7 C 0.159 3.841 8 H 0.066 0.934 9 C -0.156 4.156 10 C -0.098 4.098 11 C 0.014 3.986 12 N -0.481 5.481 13 C 0.023 3.977 14 C 0.442 3.558 15 O -0.617 6.617 16 N -0.577 5.577 17 C -0.334 4.334 18 H 0.078 0.922 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.995 3.005 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.273 1.273 25 C 0.014 3.986 26 C -0.142 4.142 27 C -0.175 4.175 28 C -0.160 4.160 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.154 0.846 33 H 0.415 0.585 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.074 0.926 42 H 0.395 0.605 43 H 0.278 0.722 44 H 0.106 0.894 45 H 0.073 0.927 46 H 0.130 0.870 47 H 0.099 0.901 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.762 -27.227 13.853 31.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.003 4.003 3 C -0.254 4.254 4 C 0.331 3.669 5 O -0.463 6.463 6 N -0.359 5.359 7 C 0.054 3.946 8 H 0.084 0.916 9 C -0.214 4.214 10 C -0.117 4.117 11 C -0.116 4.116 12 N -0.203 5.203 13 C -0.108 4.108 14 C 0.229 3.771 15 O -0.503 6.503 16 N -0.214 5.214 17 C -0.464 4.464 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.563 5.563 21 Si 0.818 3.182 22 H -0.195 1.195 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.115 4.115 26 C -0.160 4.160 27 C -0.211 4.211 28 C -0.197 4.197 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.172 0.828 33 H 0.252 0.748 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.138 0.862 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.092 0.908 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.124 0.876 45 H 0.091 0.909 46 H 0.148 0.852 47 H 0.118 0.882 48 H 0.131 0.869 49 H 0.134 0.866 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.757 -26.173 14.118 31.001 hybrid contribution -0.969 0.476 -0.674 1.272 sum 7.788 -25.698 13.445 30.030 Atomic orbital electron populations 1.21125 0.91919 1.02502 1.02584 1.21954 0.95660 0.93564 0.89128 1.22380 1.01408 0.90572 1.11075 1.18944 0.86568 0.85223 0.76174 1.90762 1.16904 1.88150 1.50442 1.45789 1.13509 1.04492 1.72097 1.20799 0.95548 0.82357 0.95894 0.91598 1.22086 1.02956 1.01479 0.94906 1.23137 1.00302 0.93462 0.94819 1.23958 0.97323 0.98747 0.91541 1.68346 1.32117 1.18704 1.01181 1.22344 0.97018 0.92841 0.98635 1.20783 0.82409 0.91469 0.82394 1.90476 1.48021 1.58813 1.52989 1.41968 1.37870 1.07896 1.33694 1.19671 1.23476 0.84054 1.19200 0.90389 1.26062 0.95228 1.04604 0.95455 1.69677 1.26074 1.36461 1.24039 0.84907 0.77988 0.76810 0.78491 1.19549 1.19465 1.19796 1.24037 1.03272 0.88827 0.95335 1.21336 1.00686 0.87944 1.05989 1.23212 1.00399 0.97645 0.99869 1.23048 1.04019 1.01179 0.91459 0.91497 0.91356 0.90834 0.82845 0.74848 0.91441 0.93519 0.90827 0.86188 0.91266 0.90476 0.87666 0.90799 0.77125 0.91303 0.87592 0.90879 0.85171 0.88247 0.86905 0.86647 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.21 71.24 0.58 -1.65 16 2 C 0.00 -0.02 5.81 -17.62 -0.10 -0.12 16 3 C -0.23 -3.42 9.67 23.43 0.23 -3.19 16 4 C 0.54 10.83 7.58 86.57 0.66 11.49 16 5 O -0.58 -16.09 12.95 -4.09 -0.05 -16.14 16 6 N -0.71 -11.10 4.89 -446.13 -2.18 -13.28 16 7 C 0.16 3.02 2.32 44.99 0.10 3.13 16 8 H 0.07 1.59 7.42 -2.39 -0.02 1.58 16 9 C -0.16 -2.83 9.47 71.98 0.68 -2.15 16 10 C -0.10 -1.93 3.36 -10.14 -0.03 -1.97 16 11 C 0.01 0.39 7.49 86.41 0.65 1.04 16 12 N -0.48 -15.62 5.65 -912.27 -5.15 -20.78 16 13 C 0.02 0.85 5.28 85.56 0.45 1.30 16 14 C 0.44 22.03 7.83 87.66 0.69 22.72 16 15 O -0.62 -35.73 16.01 -3.06 -0.05 -35.78 16 16 N -0.58 -30.72 5.29 -306.98 -1.62 -32.35 16 17 C -0.33 -19.56 9.68 84.04 0.81 -18.74 16 18 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 19 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 20 N -0.92 -50.80 13.05 21.66 0.28 -50.52 16 21 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 C 0.01 0.30 7.33 86.41 0.63 0.93 16 26 C -0.14 -1.39 6.01 -11.54 -0.07 -1.46 16 27 C -0.17 -1.44 9.87 30.59 0.30 -1.13 16 28 C -0.16 -1.32 10.20 30.59 0.31 -1.01 16 29 H 0.07 1.32 8.04 -2.39 -0.02 1.30 16 30 H 0.07 1.58 6.13 -2.39 -0.01 1.56 16 31 H 0.07 1.02 5.78 -2.39 -0.01 1.01 16 32 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.41 4.08 8.59 -92.71 -0.80 3.29 16 34 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.07 1.94 7.33 -2.39 -0.02 1.92 16 39 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 40 H 0.11 3.40 8.08 -2.39 -0.02 3.38 16 41 H 0.07 2.42 7.38 -2.39 -0.02 2.40 16 42 H 0.40 20.00 7.90 -92.70 -0.73 19.27 16 43 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 44 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.07 1.56 7.88 -2.39 -0.02 1.54 16 46 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.10 0.89 6.02 -2.38 -0.01 0.88 16 48 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -75.52 409.78 -0.96 -76.47 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -0.57 Total: 37.65 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 6.36 Total: 8.89 kcal Atomic # 7 Polarization: -108.25 SS G_CDS: -8.67 Total: -116.92 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: -0.10 Total: -51.92 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -75.52 -0.96 -76.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276350365.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.976 kcal (2) G-P(sol) polarization free energy of solvation -75.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds