Wall clock time and date at job start Tue Mar 31 2020 18:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32993 * 120.00234 * 2 1 4 4 C 1.47108 * 119.99813 * 5.99939 * 3 2 1 5 5 O 1.21614 * 119.99938 * 354.80263 * 4 3 2 6 6 N 1.34776 * 119.99901 * 175.06913 * 4 3 2 7 7 C 1.46495 * 120.00016 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.47137 * 34.99634 * 7 6 4 9 9 C 1.53003 * 109.47143 * 275.00235 * 7 6 4 10 10 C 1.52998 * 109.47404 * 155.00329 * 7 6 4 11 11 C 1.53937 * 113.73076 * 278.76503 * 10 7 6 12 12 N 1.48186 * 86.10105 * 221.95668 * 11 10 7 13 13 C 1.46902 * 111.07523 * 137.52194 * 12 11 10 14 14 C 1.50695 * 109.47103 * 90.56321 * 13 12 11 15 15 O 1.21292 * 120.00040 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99974 * 180.02562 * 14 13 12 17 17 C 1.37102 * 119.99893 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99879 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99686 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00157 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99752 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47037 * 89.99505 * 21 19 17 23 23 H 1.48502 * 109.46779 * 209.99602 * 21 19 17 24 24 H 1.48495 * 109.46904 * 329.99365 * 21 19 17 25 25 C 1.47964 * 90.80219 * 24.60009 * 12 11 10 26 26 C 1.50703 * 120.00216 * 179.97438 * 2 1 3 27 27 C 1.53005 * 117.49672 * 14.74364 * 26 2 1 28 28 C 1.52995 * 117.49873 * 306.12467 * 26 2 1 29 29 H 1.08996 * 109.47210 * 55.82408 * 1 2 3 30 30 H 1.09000 * 109.47259 * 175.82563 * 1 2 3 31 31 H 1.09005 * 109.47114 * 295.82083 * 1 2 3 32 32 H 1.08004 * 120.00280 * 186.00502 * 3 2 1 33 33 H 0.97002 * 120.00084 * 0.02562 * 6 4 3 34 34 H 1.09001 * 109.47194 * 300.00205 * 9 7 6 35 35 H 1.09000 * 109.47139 * 59.99777 * 9 7 6 36 36 H 1.09000 * 109.47637 * 179.97438 * 9 7 6 37 37 H 1.08997 * 112.93887 * 50.33284 * 10 7 6 38 38 H 1.08992 * 113.75938 * 336.23692 * 11 10 7 39 39 H 1.08994 * 113.75907 * 107.60444 * 11 10 7 40 40 H 1.08997 * 109.47558 * 210.56826 * 13 12 11 41 41 H 1.09002 * 109.46427 * 330.56977 * 13 12 11 42 42 H 0.96998 * 120.00111 * 0.02562 * 16 14 13 43 43 H 0.97003 * 119.99698 * 180.02562 * 20 19 17 44 44 H 1.08997 * 113.76175 * 221.08661 * 25 12 11 45 45 H 1.09002 * 113.85837 * 89.72602 * 25 12 11 46 46 H 1.09001 * 115.55041 * 160.44714 * 26 2 1 47 47 H 1.08998 * 117.49447 * 359.97438 * 27 26 2 48 48 H 1.08995 * 117.49844 * 145.01920 * 27 26 2 49 49 H 1.09006 * 117.49661 * 214.97625 * 28 26 2 50 50 H 1.09005 * 117.50314 * 359.97152 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4425 2.4222 0.1332 5 8 0.2264 2.4265 0.1481 6 7 2.1217 3.5820 0.2332 7 6 1.3953 4.8472 0.3663 8 1 0.4938 4.6880 0.9580 9 6 1.0097 5.3624 -1.0218 10 6 2.2874 5.8767 1.0628 11 6 2.3155 5.7362 2.5955 12 7 2.2369 7.2155 2.6313 13 6 1.2994 7.6698 3.6671 14 6 2.0418 7.8718 4.9628 15 8 3.2346 7.6589 5.0179 16 7 1.3803 8.2892 6.0605 17 6 2.0559 8.4735 7.2392 18 1 3.1180 8.2839 7.2882 19 6 1.3738 8.9033 8.3709 20 7 0.0814 9.1335 8.3113 21 14 2.2943 9.1551 9.9768 22 1 2.7907 10.5529 10.0488 23 1 1.3798 8.8950 11.1175 24 1 3.4441 8.2176 10.0404 25 6 1.6011 7.2349 1.2953 26 6 2.2605 -1.3051 0.0006 27 6 1.4771 -2.5733 -0.3443 28 6 1.9209 -2.3164 1.0972 29 1 -0.3633 0.5772 -0.8502 30 1 -0.3634 -1.0249 -0.0748 31 1 -0.3633 0.4476 0.9251 32 1 3.2476 1.1543 -0.0978 33 1 3.0916 3.5790 0.2170 34 1 1.9112 5.5216 -1.6136 35 1 0.3742 4.6290 -1.5180 36 1 0.4689 6.3036 -0.9228 37 1 3.2763 5.9565 0.6113 38 1 1.4369 5.2397 3.0071 39 1 3.2523 5.3356 2.9826 40 1 0.8448 8.6110 3.3582 41 1 0.5215 6.9192 3.8073 42 1 0.4264 8.4591 6.0165 43 1 -0.3947 9.4339 9.1013 44 1 1.9683 8.0294 0.6457 45 1 0.5130 7.1778 1.3241 46 1 3.2981 -1.2490 -0.3286 47 1 0.4166 -2.4637 -0.5711 48 1 1.9992 -3.3518 -0.9005 49 1 2.7351 -2.9260 1.4894 50 1 1.1527 -2.0377 1.8186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276350366.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:48 Heat of formation + Delta-G solvation = 2.241595 kcal Electronic energy + Delta-G solvation = -28165.887293 eV Core-core repulsion = 24195.363856 eV Total energy + Delta-G solvation = -3970.523437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.54050 -39.67170 -38.31379 -37.70424 -35.45528 -33.84232 -33.42052 -31.64552 -31.14264 -29.43641 -27.91958 -26.24160 -25.52971 -24.72103 -23.87153 -22.81892 -21.86733 -20.69384 -19.74624 -19.20623 -18.64550 -17.82654 -17.16317 -16.81326 -16.12667 -15.96424 -15.27731 -15.25237 -15.00699 -14.72714 -14.64449 -14.23717 -13.78687 -13.67385 -13.53418 -13.33010 -13.15996 -12.94429 -12.59943 -12.52017 -12.36373 -12.27254 -11.93150 -11.80836 -11.62216 -11.56786 -11.34058 -11.30140 -11.04725 -10.92581 -10.88515 -10.63026 -10.61285 -10.36835 -10.17703 -9.71777 -9.46274 -9.40173 -9.02794 -8.65903 -8.12444 -7.91876 -6.37800 -3.78429 1.06462 3.00704 3.09576 3.20235 3.28262 3.34332 3.50997 3.92798 3.98040 4.13086 4.24704 4.39307 4.40147 4.47476 4.57979 4.58941 4.74786 4.92051 5.01539 5.06953 5.14654 5.20982 5.24173 5.27979 5.34348 5.42207 5.44042 5.47982 5.56274 5.59552 5.62010 5.65882 5.68624 5.72940 5.77828 5.78950 5.84783 5.95515 6.05772 6.19459 6.19523 6.25796 6.32371 6.42888 6.62610 7.21937 7.41227 7.58656 8.10297 8.13713 8.66682 9.22523 9.59295 10.11944 10.80157 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012926 B = 0.002010 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.656244 B =13925.877195 C =15318.919586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.000 4.000 3 C -0.230 4.230 4 C 0.547 3.453 5 O -0.543 6.543 6 N -0.720 5.720 7 C 0.151 3.849 8 H 0.088 0.912 9 C -0.160 4.160 10 C -0.125 4.125 11 C 0.018 3.982 12 N -0.450 5.450 13 C 0.010 3.990 14 C 0.447 3.553 15 O -0.576 6.576 16 N -0.568 5.568 17 C -0.297 4.297 18 H 0.102 0.898 19 C 0.020 3.980 20 N -0.903 5.903 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.010 3.990 26 C -0.135 4.135 27 C -0.175 4.175 28 C -0.163 4.163 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.400 0.600 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.090 0.910 45 H 0.070 0.930 46 H 0.115 0.885 47 H 0.103 0.897 48 H 0.099 0.901 49 H 0.101 0.899 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.458 -18.338 -21.158 28.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.001 4.001 3 C -0.251 4.251 4 C 0.337 3.663 5 O -0.423 6.423 6 N -0.371 5.371 7 C 0.046 3.954 8 H 0.106 0.894 9 C -0.219 4.219 10 C -0.144 4.144 11 C -0.111 4.111 12 N -0.172 5.172 13 C -0.122 4.122 14 C 0.232 3.768 15 O -0.459 6.459 16 N -0.205 5.205 17 C -0.427 4.427 18 H 0.120 0.880 19 C -0.181 4.181 20 N -0.545 5.545 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.195 1.195 25 C -0.120 4.120 26 C -0.153 4.153 27 C -0.211 4.211 28 C -0.200 4.200 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.143 0.857 33 H 0.235 0.765 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.133 0.867 47 H 0.121 0.879 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.850 -17.984 -20.794 27.505 hybrid contribution -0.380 -0.005 0.823 0.906 sum 0.470 -17.989 -19.971 26.883 Atomic orbital electron populations 1.21104 0.90679 1.01285 1.04532 1.21789 0.96193 0.92370 0.89796 1.22269 1.00166 0.91864 1.10770 1.18487 0.87359 0.84154 0.76322 1.90778 1.13685 1.87371 1.50456 1.45937 1.10260 1.06025 1.74857 1.21018 0.95364 0.82255 0.96731 0.89424 1.22131 1.01691 1.01498 0.96530 1.23315 1.00099 0.94780 0.96253 1.24004 1.02751 0.90448 0.93854 1.68409 1.37245 1.11410 1.00097 1.22475 0.94505 1.01392 0.93843 1.19702 0.88250 0.84236 0.84603 1.90514 1.15009 1.55572 1.84820 1.41883 1.10954 1.59114 1.08582 1.19691 0.95084 1.41888 0.86019 0.87995 1.25255 0.95702 0.97389 0.99727 1.69616 1.07408 1.46563 1.30902 0.85862 0.78979 0.78772 0.80692 1.20425 1.20965 1.19466 1.23948 0.98031 0.96666 0.93316 1.21288 0.99628 0.88429 1.05957 1.23121 1.01186 0.98218 0.98622 1.22992 1.03902 1.01096 0.92018 0.89730 0.92677 0.89778 0.85696 0.76546 0.92425 0.92241 0.91421 0.87862 0.91454 0.89163 0.89434 0.92488 0.77564 0.91944 0.89132 0.91214 0.86700 0.87852 0.88273 0.88076 0.88239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.10 36.00 0.29 -0.82 16 2 C 0.00 0.00 5.82 -101.17 -0.59 -0.59 16 3 C -0.23 -2.04 9.67 -37.80 -0.37 -2.40 16 4 C 0.55 6.05 7.69 -12.66 -0.10 5.96 16 5 O -0.54 -7.60 12.77 5.26 0.07 -7.53 16 6 N -0.72 -6.74 5.07 -54.99 -0.28 -7.02 16 7 C 0.15 1.53 2.38 -67.93 -0.16 1.37 16 8 H 0.09 1.08 7.42 -51.93 -0.39 0.69 16 9 C -0.16 -1.44 9.31 37.16 0.35 -1.09 16 10 C -0.13 -1.35 3.46 -89.68 -0.31 -1.66 16 11 C 0.02 0.27 7.53 -2.63 -0.02 0.25 16 12 N -0.45 -7.51 5.65 -239.52 -1.35 -8.87 16 13 C 0.01 0.18 5.28 -4.98 -0.03 0.16 16 14 C 0.45 10.95 7.83 -10.99 -0.09 10.87 16 15 O -0.58 -16.24 16.01 5.55 0.09 -16.15 16 16 N -0.57 -14.83 5.29 -10.96 -0.06 -14.88 16 17 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 18 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 19 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 20 N -0.90 -25.03 13.05 55.50 0.72 -24.31 16 21 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.01 0.12 6.65 -2.75 -0.02 0.10 16 26 C -0.13 -0.89 6.01 -91.77 -0.55 -1.44 16 27 C -0.17 -0.96 9.83 -26.73 -0.26 -1.22 16 28 C -0.16 -0.97 10.13 -26.74 -0.27 -1.24 16 29 H 0.08 0.88 7.19 -51.93 -0.37 0.51 16 30 H 0.05 0.40 5.57 -51.93 -0.29 0.11 16 31 H 0.08 0.92 7.28 -51.93 -0.38 0.54 16 32 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.40 2.86 8.59 -40.82 -0.35 2.51 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.56 7.52 -51.93 -0.39 0.17 16 37 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.07 0.99 7.33 -51.93 -0.38 0.61 16 39 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 41 H 0.06 0.95 7.39 -51.93 -0.38 0.57 16 42 H 0.39 9.75 7.90 -40.82 -0.32 9.43 16 43 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 46 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.56 6.09 -51.93 -0.32 0.24 16 48 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 408.61 15.07 6.16 6.16 Total: -1.00 -34.18 408.61 -10.17 -44.35 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -8.14 Total: 11.76 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -2.36 Total: 0.06 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.97 Total: -55.08 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: 0.16 Total: -23.68 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.18 -10.17 -44.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276350366.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.596 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds