Wall clock time and date at job start Tue Mar 31 2020 18:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32993 * 120.00234 * 2 1 4 4 C 1.47108 * 119.99813 * 5.99939 * 3 2 1 5 5 O 1.21614 * 119.99938 * 354.80263 * 4 3 2 6 6 N 1.34776 * 119.99901 * 175.06913 * 4 3 2 7 7 C 1.46495 * 120.00016 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.47137 * 34.99634 * 7 6 4 9 9 C 1.53003 * 109.47143 * 275.00235 * 7 6 4 10 10 C 1.52998 * 109.47404 * 155.00329 * 7 6 4 11 11 C 1.53937 * 113.73076 * 278.76503 * 10 7 6 12 12 N 1.48186 * 86.10105 * 221.95668 * 11 10 7 13 13 C 1.46902 * 111.07523 * 137.52194 * 12 11 10 14 14 C 1.50695 * 109.47103 * 90.56321 * 13 12 11 15 15 O 1.21292 * 120.00040 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99974 * 180.02562 * 14 13 12 17 17 C 1.37102 * 119.99893 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99879 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99686 * 180.02562 * 17 16 14 20 20 N 1.31412 * 120.00157 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99752 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47037 * 89.99505 * 21 19 17 23 23 H 1.48502 * 109.46779 * 209.99602 * 21 19 17 24 24 H 1.48495 * 109.46904 * 329.99365 * 21 19 17 25 25 C 1.47964 * 90.80219 * 24.60009 * 12 11 10 26 26 C 1.50703 * 120.00216 * 179.97438 * 2 1 3 27 27 C 1.53005 * 117.49672 * 14.74364 * 26 2 1 28 28 C 1.52995 * 117.49873 * 306.12467 * 26 2 1 29 29 H 1.08996 * 109.47210 * 55.82408 * 1 2 3 30 30 H 1.09000 * 109.47259 * 175.82563 * 1 2 3 31 31 H 1.09005 * 109.47114 * 295.82083 * 1 2 3 32 32 H 1.08004 * 120.00280 * 186.00502 * 3 2 1 33 33 H 0.97002 * 120.00084 * 0.02562 * 6 4 3 34 34 H 1.09001 * 109.47194 * 300.00205 * 9 7 6 35 35 H 1.09000 * 109.47139 * 59.99777 * 9 7 6 36 36 H 1.09000 * 109.47637 * 179.97438 * 9 7 6 37 37 H 1.08997 * 112.93887 * 50.33284 * 10 7 6 38 38 H 1.08992 * 113.75938 * 336.23692 * 11 10 7 39 39 H 1.08994 * 113.75907 * 107.60444 * 11 10 7 40 40 H 1.08997 * 109.47558 * 210.56826 * 13 12 11 41 41 H 1.09002 * 109.46427 * 330.56977 * 13 12 11 42 42 H 0.96998 * 120.00111 * 0.02562 * 16 14 13 43 43 H 0.97003 * 119.99698 * 180.02562 * 20 19 17 44 44 H 1.08997 * 113.76175 * 221.08661 * 25 12 11 45 45 H 1.09002 * 113.85837 * 89.72602 * 25 12 11 46 46 H 1.09001 * 115.55041 * 160.44714 * 26 2 1 47 47 H 1.08998 * 117.49447 * 359.97438 * 27 26 2 48 48 H 1.08995 * 117.49844 * 145.01920 * 27 26 2 49 49 H 1.09006 * 117.49661 * 214.97625 * 28 26 2 50 50 H 1.09005 * 117.50314 * 359.97152 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4425 2.4222 0.1332 5 8 0.2264 2.4265 0.1481 6 7 2.1217 3.5820 0.2332 7 6 1.3953 4.8472 0.3663 8 1 0.4938 4.6880 0.9580 9 6 1.0097 5.3624 -1.0218 10 6 2.2874 5.8767 1.0628 11 6 2.3155 5.7362 2.5955 12 7 2.2369 7.2155 2.6313 13 6 1.2994 7.6698 3.6671 14 6 2.0418 7.8718 4.9628 15 8 3.2346 7.6589 5.0179 16 7 1.3803 8.2892 6.0605 17 6 2.0559 8.4735 7.2392 18 1 3.1180 8.2839 7.2882 19 6 1.3738 8.9033 8.3709 20 7 0.0814 9.1335 8.3113 21 14 2.2943 9.1551 9.9768 22 1 2.7907 10.5529 10.0488 23 1 1.3798 8.8950 11.1175 24 1 3.4441 8.2176 10.0404 25 6 1.6011 7.2349 1.2953 26 6 2.2605 -1.3051 0.0006 27 6 1.4771 -2.5733 -0.3443 28 6 1.9209 -2.3164 1.0972 29 1 -0.3633 0.5772 -0.8502 30 1 -0.3634 -1.0249 -0.0748 31 1 -0.3633 0.4476 0.9251 32 1 3.2476 1.1543 -0.0978 33 1 3.0916 3.5790 0.2170 34 1 1.9112 5.5216 -1.6136 35 1 0.3742 4.6290 -1.5180 36 1 0.4689 6.3036 -0.9228 37 1 3.2763 5.9565 0.6113 38 1 1.4369 5.2397 3.0071 39 1 3.2523 5.3356 2.9826 40 1 0.8448 8.6110 3.3582 41 1 0.5215 6.9192 3.8073 42 1 0.4264 8.4591 6.0165 43 1 -0.3947 9.4339 9.1013 44 1 1.9683 8.0294 0.6457 45 1 0.5130 7.1778 1.3241 46 1 3.2981 -1.2490 -0.3286 47 1 0.4166 -2.4637 -0.5711 48 1 1.9992 -3.3518 -0.9005 49 1 2.7351 -2.9260 1.4894 50 1 1.1527 -2.0377 1.8186 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276350366.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:47 Heat of formation + Delta-G solvation = -22.327916 kcal Electronic energy + Delta-G solvation = -28166.952707 eV Core-core repulsion = 24195.363856 eV Total energy + Delta-G solvation = -3971.588851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.56658 -40.68294 -39.62902 -38.82318 -36.41251 -35.90046 -34.10576 -33.32832 -32.55122 -30.65601 -28.65541 -27.57611 -26.92691 -25.76312 -25.03613 -23.25306 -22.87075 -21.53839 -20.99971 -20.67220 -19.91981 -19.36496 -17.96722 -17.81685 -17.60285 -16.81142 -16.61037 -16.41638 -16.32902 -15.90213 -15.77178 -15.64072 -15.19191 -14.88739 -14.55285 -14.27827 -14.05202 -14.00383 -13.84184 -13.68866 -13.52866 -13.27482 -12.98927 -12.95145 -12.70074 -12.65353 -12.49488 -12.43971 -12.14723 -12.13889 -11.86075 -11.82460 -11.77755 -11.64622 -11.51063 -11.35994 -10.57598 -10.39236 -10.20150 -10.02644 -9.76515 -9.57829 -8.47854 -5.96937 0.35564 1.36681 1.39734 1.52991 2.04132 2.21284 2.27709 2.32934 2.77127 3.01761 3.17949 3.30589 3.45589 3.58472 3.66566 3.87124 3.95446 4.07835 4.11416 4.16800 4.17121 4.22871 4.26987 4.36415 4.42441 4.47103 4.50891 4.52926 4.64801 4.75982 4.78917 4.81783 4.83484 4.84248 4.98280 5.00090 5.11363 5.12876 5.20659 5.24636 5.32831 5.38765 5.42406 5.52240 5.54225 5.62818 5.89081 6.07838 6.59250 6.65953 7.11514 7.33688 7.54887 8.11306 8.69650 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012926 B = 0.002010 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.656244 B =13925.877195 C =15318.919586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.001 4.001 3 C -0.237 4.237 4 C 0.539 3.461 5 O -0.580 6.580 6 N -0.712 5.712 7 C 0.157 3.843 8 H 0.065 0.935 9 C -0.153 4.153 10 C -0.097 4.097 11 C 0.011 3.989 12 N -0.482 5.482 13 C 0.023 3.977 14 C 0.441 3.559 15 O -0.618 6.618 16 N -0.577 5.577 17 C -0.334 4.334 18 H 0.078 0.922 19 C -0.015 4.015 20 N -0.921 5.921 21 Si 0.994 3.006 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.273 1.273 25 C 0.016 3.984 26 C -0.143 4.143 27 C -0.168 4.168 28 C -0.166 4.166 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.151 0.849 33 H 0.413 0.587 34 H 0.072 0.928 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.395 0.605 43 H 0.278 0.722 44 H 0.109 0.891 45 H 0.084 0.916 46 H 0.130 0.870 47 H 0.101 0.899 48 H 0.115 0.885 49 H 0.114 0.886 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.956 -18.844 -22.288 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.003 4.003 3 C -0.258 4.258 4 C 0.330 3.670 5 O -0.462 6.462 6 N -0.363 5.363 7 C 0.052 3.948 8 H 0.083 0.917 9 C -0.211 4.211 10 C -0.117 4.117 11 C -0.118 4.118 12 N -0.205 5.205 13 C -0.109 4.109 14 C 0.229 3.771 15 O -0.504 6.504 16 N -0.214 5.214 17 C -0.463 4.463 18 H 0.096 0.904 19 C -0.215 4.215 20 N -0.562 5.562 21 Si 0.818 3.182 22 H -0.195 1.195 23 H -0.194 1.194 24 H -0.198 1.198 25 C -0.112 4.112 26 C -0.161 4.161 27 C -0.205 4.205 28 C -0.203 4.203 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.169 0.831 33 H 0.249 0.751 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.137 0.863 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.102 0.898 46 H 0.148 0.852 47 H 0.120 0.880 48 H 0.134 0.866 49 H 0.132 0.868 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.344 -18.479 -21.947 28.722 hybrid contribution -0.554 0.128 1.154 1.286 sum 0.790 -18.351 -20.793 27.744 Atomic orbital electron populations 1.21000 0.91652 1.01822 1.02710 1.21986 0.95801 0.93526 0.89028 1.22403 1.01306 0.90794 1.11305 1.18926 0.87106 0.85182 0.75789 1.90764 1.15295 1.87916 1.52253 1.45874 1.10911 1.05473 1.74069 1.20877 0.94362 0.82379 0.97180 0.91705 1.22066 1.02223 1.01420 0.95414 1.23125 1.00874 0.94264 0.93410 1.24008 1.01545 0.89443 0.96841 1.68376 1.38044 1.12466 1.01579 1.22348 0.94277 1.03094 0.91139 1.20816 0.88093 0.82182 0.86035 1.90474 1.17147 1.56933 1.85839 1.41971 1.11090 1.59687 1.08702 1.19657 0.94513 1.44261 0.87890 0.90445 1.26071 0.96594 0.96308 1.02482 1.69678 1.08288 1.46164 1.32084 0.84912 0.77798 0.78784 0.76733 1.19518 1.19438 1.19812 1.24068 0.98914 0.97661 0.90584 1.21353 1.00255 0.87616 1.06855 1.23210 1.01166 0.97794 0.98297 1.23059 1.04154 1.00950 0.92116 0.91249 0.90911 0.92013 0.83138 0.75070 0.90872 0.93693 0.90347 0.86266 0.92057 0.91034 0.87326 0.90861 0.77097 0.91298 0.87324 0.89779 0.85237 0.88038 0.86640 0.86763 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 8.10 71.23 0.58 -1.62 16 2 C 0.00 -0.02 5.82 -17.62 -0.10 -0.13 16 3 C -0.24 -4.01 9.67 23.43 0.23 -3.78 16 4 C 0.54 11.87 7.69 86.57 0.67 12.53 16 5 O -0.58 -16.76 12.77 -4.08 -0.05 -16.81 16 6 N -0.71 -12.65 5.07 -446.14 -2.26 -14.91 16 7 C 0.16 2.99 2.38 44.99 0.11 3.10 16 8 H 0.06 1.58 7.42 -2.39 -0.02 1.56 16 9 C -0.15 -2.45 9.31 71.98 0.67 -1.78 16 10 C -0.10 -1.93 3.46 -10.15 -0.04 -1.97 16 11 C 0.01 0.31 7.53 86.37 0.65 0.96 16 12 N -0.48 -15.67 5.65 -911.72 -5.15 -20.82 16 13 C 0.02 0.84 5.28 85.56 0.45 1.29 16 14 C 0.44 22.06 7.83 87.65 0.69 22.75 16 15 O -0.62 -35.92 16.01 -3.07 -0.05 -35.97 16 16 N -0.58 -30.79 5.29 -306.98 -1.62 -32.41 16 17 C -0.33 -19.54 9.68 84.04 0.81 -18.73 16 18 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 19 C -0.02 -0.82 5.50 84.93 0.47 -0.36 16 20 N -0.92 -50.83 13.05 21.66 0.28 -50.55 16 21 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 22 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 23 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 C 0.02 0.35 6.65 86.41 0.57 0.93 16 26 C -0.14 -1.65 6.01 -11.54 -0.07 -1.72 16 27 C -0.17 -1.54 9.83 30.59 0.30 -1.24 16 28 C -0.17 -1.74 10.13 30.59 0.31 -1.43 16 29 H 0.07 1.52 7.19 -2.39 -0.02 1.50 16 30 H 0.07 1.05 5.57 -2.39 -0.01 1.04 16 31 H 0.06 1.45 7.28 -2.38 -0.02 1.43 16 32 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 33 H 0.41 5.21 8.59 -92.71 -0.80 4.41 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 1.09 7.52 -2.39 -0.02 1.07 16 37 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 1.83 7.33 -2.39 -0.02 1.82 16 39 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.11 3.44 8.08 -2.39 -0.02 3.42 16 41 H 0.07 2.40 7.39 -2.39 -0.02 2.38 16 42 H 0.40 20.02 7.90 -92.71 -0.73 19.29 16 43 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 44 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.08 1.61 7.88 -2.39 -0.02 1.59 16 46 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.10 0.96 6.09 -2.39 -0.01 0.94 16 48 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 50 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -76.12 408.61 -1.10 -77.22 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -0.57 Total: 39.55 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 6.29 Total: 8.80 kcal Atomic # 7 Polarization: -109.94 SS G_CDS: -8.75 Total: -118.69 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -0.10 Total: -52.78 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -76.12 -1.10 -77.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276350366.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.890 kcal (2) G-P(sol) polarization free energy of solvation -76.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds