Wall clock time and date at job start Tue Mar 31 2020 18:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47263 * 2 1 4 4 N 1.46503 * 109.47290 * 239.99949 * 2 1 3 5 5 C 1.34780 * 119.99730 * 85.00266 * 4 2 1 6 6 O 1.21281 * 119.99961 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99661 * 180.02562 * 5 4 2 8 8 C 1.52998 * 115.55027 * 179.91180 * 7 5 4 9 9 C 1.52996 * 117.49828 * 34.32519 * 8 7 5 10 10 C 1.53002 * 117.49848 * 325.66591 * 8 7 5 11 11 C 1.53002 * 117.50352 * 34.20002 * 7 5 4 12 12 C 1.53002 * 117.49940 * 325.57547 * 7 5 4 13 13 C 1.53001 * 109.47110 * 119.99907 * 2 1 3 14 14 C 1.53507 * 114.17269 * 299.99828 * 13 2 1 15 15 N 1.47479 * 87.93524 * 220.32890 * 14 13 2 16 16 C 1.46902 * 110.99664 * 138.70482 * 15 14 13 17 17 C 1.50706 * 109.46577 * 170.00012 * 16 15 14 18 18 O 1.21292 * 120.00254 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99762 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99962 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99996 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99667 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00253 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99802 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47118 * 90.00030 * 24 22 20 26 26 H 1.48499 * 109.47293 * 210.00034 * 24 22 20 27 27 H 1.48504 * 109.47104 * 330.00279 * 24 22 20 28 28 C 1.47481 * 87.83240 * 27.01037 * 15 14 13 29 29 H 1.08997 * 109.46948 * 60.00100 * 1 2 3 30 30 H 1.09000 * 109.47054 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47030 * 300.00074 * 1 2 3 32 32 H 0.96999 * 120.00150 * 265.00365 * 4 2 1 33 33 H 1.09002 * 115.55432 * 179.97438 * 8 7 5 34 34 H 1.08999 * 117.50531 * 0.02562 * 9 8 7 35 35 H 1.09007 * 117.49973 * 145.02366 * 9 8 7 36 36 H 1.08996 * 117.49947 * 214.98226 * 10 8 7 37 37 H 1.09003 * 117.49747 * 359.97438 * 10 8 7 38 38 H 1.08997 * 117.49799 * 0.02562 * 11 7 5 39 39 H 1.08992 * 117.49983 * 145.02498 * 11 7 5 40 40 H 1.09004 * 117.50033 * 214.98081 * 12 7 5 41 41 H 1.09003 * 117.50155 * 359.97438 * 12 7 5 42 42 H 1.08998 * 113.38372 * 73.08450 * 13 2 1 43 43 H 1.09000 * 113.47310 * 105.55876 * 14 13 2 44 44 H 1.09005 * 113.53007 * 335.10763 * 14 13 2 45 45 H 1.09000 * 109.46894 * 50.00246 * 16 15 14 46 46 H 1.09000 * 109.47263 * 289.99812 * 16 15 14 47 47 H 0.96999 * 120.00047 * 0.02562 * 19 17 16 48 48 H 0.96996 * 119.99717 * 179.97438 * 23 22 20 49 49 H 1.08996 * 113.47284 * 87.75825 * 28 15 14 50 50 H 1.08997 * 113.47252 * 218.21878 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1584 -2.4117 7 6 2.6490 -0.7287 -3.5877 8 6 2.7536 0.1305 -4.8493 9 6 3.1437 1.5994 -4.6732 10 6 1.7060 1.2283 -5.0453 11 6 2.2596 -2.1979 -3.7634 12 6 3.6966 -1.8265 -3.3918 13 6 2.0400 -0.7212 1.2493 14 6 1.5894 -0.0839 2.5711 15 7 2.9423 -0.3452 3.0966 16 6 3.4288 0.7932 3.8874 17 6 4.6941 0.4013 4.6062 18 8 5.1458 -0.7164 4.4731 19 7 5.3237 1.2929 5.3968 20 6 6.4745 0.9363 6.0511 21 1 6.8767 -0.0590 5.9326 22 6 7.1233 1.8554 6.8666 23 7 6.6336 3.0663 7.0111 24 14 8.6916 1.3697 7.7575 25 1 9.8640 1.6776 6.8995 26 1 8.7949 2.1308 9.0285 27 1 8.6629 -0.0854 8.0528 28 6 3.4347 -0.2733 1.7083 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2490 -1.6318 -1.1526 33 1 3.1170 -0.3833 -5.7393 34 1 3.3262 1.9536 -3.6586 35 1 3.7631 2.0520 -5.4476 36 1 1.3801 1.4367 -6.0642 37 1 0.9420 1.3380 -4.2756 38 1 1.6402 -2.6505 -2.9891 39 1 2.0779 -2.5526 -4.7778 40 1 4.4601 -1.9368 -4.1619 41 1 4.0232 -2.0345 -2.3728 42 1 1.9097 -1.8026 1.2079 43 1 0.8088 -0.6482 3.0813 44 1 1.3544 0.9771 2.4848 45 1 2.6707 1.0797 4.6163 46 1 3.6328 1.6348 3.2254 47 1 4.9623 2.1867 5.5034 48 1 7.0863 3.7077 7.5807 49 1 3.6926 0.7370 1.3909 50 1 4.2182 -0.9982 1.4874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276389941.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:00 Heat of formation + Delta-G solvation = 20.640955 kcal Electronic energy + Delta-G solvation = -28926.599465 eV Core-core repulsion = 24956.873885 eV Total energy + Delta-G solvation = -3969.725581 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01833 -40.16568 -37.92394 -37.42592 -36.20014 -34.93033 -33.85828 -31.49989 -31.11036 -29.44953 -26.30130 -25.52918 -25.21923 -24.14416 -23.08271 -22.83510 -22.23368 -21.20476 -20.45925 -19.37567 -19.02392 -17.86175 -17.09784 -16.83112 -16.08661 -15.76458 -15.51503 -15.27910 -15.05760 -14.72570 -14.68195 -14.29271 -13.99880 -13.71704 -13.54416 -13.43196 -13.04653 -12.76983 -12.61917 -12.52617 -12.35868 -12.11712 -11.91485 -11.72682 -11.63636 -11.39939 -11.38233 -11.18388 -11.07868 -10.98345 -10.75243 -10.48132 -10.38054 -10.36164 -10.19509 -9.74061 -9.73555 -9.48001 -9.31165 -8.77124 -8.18344 -7.93839 -6.39459 -3.80168 2.18952 2.82266 3.19050 3.27347 3.32335 3.33431 3.88965 3.91695 3.97692 4.04620 4.12168 4.22377 4.29358 4.53529 4.55886 4.62811 4.86902 4.95617 4.98353 5.00096 5.06033 5.13621 5.15893 5.20013 5.22530 5.35632 5.42139 5.43382 5.46646 5.50438 5.60102 5.60946 5.62798 5.67987 5.72737 5.74239 5.75555 5.90510 5.99634 6.03800 6.15456 6.22149 6.29107 6.33407 6.54556 7.18085 7.25104 7.57148 8.00459 8.08389 8.64686 9.20754 9.57214 10.09710 10.78513 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016392 B = 0.002124 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.705433 B =13181.470547 C =13707.883982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.154 3.846 3 H 0.090 0.910 4 N -0.722 5.722 5 C 0.550 3.450 6 O -0.529 6.529 7 C -0.125 4.125 8 C -0.118 4.118 9 C -0.167 4.167 10 C -0.168 4.168 11 C -0.155 4.155 12 C -0.154 4.154 13 C -0.126 4.126 14 C 0.006 3.994 15 N -0.439 5.439 16 C 0.008 3.992 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.567 5.567 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.012 3.988 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.399 0.601 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.059 0.941 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.067 0.933 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.142 -6.288 -22.496 26.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.108 0.892 4 N -0.373 5.373 5 C 0.337 3.663 6 O -0.406 6.406 7 C -0.129 4.129 8 C -0.137 4.137 9 C -0.204 4.204 10 C -0.205 4.205 11 C -0.193 4.193 12 C -0.192 4.192 13 C -0.146 4.146 14 C -0.123 4.123 15 N -0.161 5.161 16 C -0.124 4.124 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 C -0.118 4.118 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.233 0.767 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.077 0.923 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.814 -6.592 -22.019 26.315 hybrid contribution 0.620 0.789 0.206 1.024 sum -12.194 -5.803 -21.813 25.655 Atomic orbital electron populations 1.22132 0.94895 1.02236 1.02619 1.20993 0.94173 0.97139 0.82735 0.89241 1.46044 1.67600 1.14110 1.09567 1.19436 0.76966 0.86681 0.83220 1.90654 1.49853 1.15604 1.84509 1.20979 1.06589 0.90646 0.94643 1.21377 1.06597 0.90308 0.95373 1.23057 0.97887 0.95778 1.03653 1.23039 0.93598 1.01825 1.01991 1.23097 0.98240 0.93979 1.03947 1.23135 0.92549 0.99569 1.03925 1.23045 0.97502 1.01041 0.92974 1.23832 0.94883 0.99961 0.93672 1.68817 1.02351 1.36417 1.08521 1.22514 0.98394 0.92825 0.98665 1.19666 0.86464 0.86480 0.84188 1.90517 1.67791 1.21178 1.66414 1.41878 1.23746 1.13584 1.41264 1.19689 1.00354 0.99862 1.22812 0.87986 1.25255 0.99748 0.95072 0.97958 1.69612 1.40666 1.04613 1.39583 0.85863 0.81216 0.78725 0.78517 1.20441 1.20930 1.19423 1.23899 0.96828 1.01245 0.89783 0.92184 0.92363 0.91281 0.76662 0.87378 0.87345 0.89569 0.89659 0.87471 0.88098 0.87564 0.87461 0.87817 0.87567 0.89428 0.91239 0.89366 0.92273 0.77556 0.91914 0.91448 0.89508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 9.29 37.16 0.35 -1.01 16 2 C 0.15 1.46 2.47 -67.93 -0.17 1.29 16 3 H 0.09 1.03 7.33 -51.93 -0.38 0.65 16 4 N -0.72 -6.21 4.88 -53.80 -0.26 -6.47 16 5 C 0.55 5.72 7.20 -10.99 -0.08 5.64 16 6 O -0.53 -7.10 11.50 5.56 0.06 -7.04 16 7 C -0.13 -1.03 2.47 -155.66 -0.38 -1.42 16 8 C -0.12 -1.02 5.85 -90.62 -0.53 -1.55 16 9 C -0.17 -1.68 9.66 -26.70 -0.26 -1.94 16 10 C -0.17 -1.61 9.66 -26.69 -0.26 -1.87 16 11 C -0.16 -0.88 9.59 -26.73 -0.26 -1.13 16 12 C -0.15 -0.97 9.59 -26.73 -0.26 -1.23 16 13 C -0.13 -1.29 3.64 -90.09 -0.33 -1.62 16 14 C 0.01 0.07 6.33 -7.56 -0.05 0.02 16 15 N -0.44 -7.19 5.82 -246.11 -1.43 -8.62 16 16 C 0.01 0.15 5.30 -4.97 -0.03 0.12 16 17 C 0.45 10.85 7.85 -10.98 -0.09 10.76 16 18 O -0.58 -16.12 16.01 5.55 0.09 -16.04 16 19 N -0.57 -14.70 5.29 -10.96 -0.06 -14.75 16 20 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 24 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 28 C 0.01 0.16 7.28 -7.56 -0.06 0.11 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.54 7.48 -51.93 -0.39 0.15 16 32 H 0.40 2.63 6.79 -40.82 -0.28 2.36 16 33 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.11 1.34 6.28 -51.93 -0.33 1.02 16 35 H 0.09 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.11 1.23 6.28 -51.93 -0.33 0.91 16 38 H 0.10 0.48 7.54 -51.93 -0.39 0.09 16 39 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.63 7.55 -51.93 -0.39 0.23 16 42 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 45 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 46 H 0.06 0.97 7.30 -51.93 -0.38 0.59 16 47 H 0.39 9.67 7.90 -40.82 -0.32 9.34 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.07 0.94 7.21 -51.93 -0.37 0.57 16 50 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 403.28 15.07 6.08 6.08 Total: -1.00 -33.75 403.28 -10.58 -44.33 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -8.12 Total: 12.33 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.63 Total: -1.93 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -1.03 Total: -54.04 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.15 Total: -23.07 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.75 -10.58 -44.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276389941.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.967 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds