Wall clock time and date at job start Tue Mar 31 2020 18:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47263 * 2 1 4 4 N 1.46503 * 109.47290 * 239.99949 * 2 1 3 5 5 C 1.34780 * 119.99730 * 85.00266 * 4 2 1 6 6 O 1.21281 * 119.99961 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99661 * 180.02562 * 5 4 2 8 8 C 1.52998 * 115.55027 * 179.91180 * 7 5 4 9 9 C 1.52996 * 117.49828 * 34.32519 * 8 7 5 10 10 C 1.53002 * 117.49848 * 325.66591 * 8 7 5 11 11 C 1.53002 * 117.50352 * 34.20002 * 7 5 4 12 12 C 1.53002 * 117.49940 * 325.57547 * 7 5 4 13 13 C 1.53001 * 109.47110 * 119.99907 * 2 1 3 14 14 C 1.53507 * 114.17269 * 299.99828 * 13 2 1 15 15 N 1.47479 * 87.93524 * 220.32890 * 14 13 2 16 16 C 1.46902 * 110.99664 * 138.70482 * 15 14 13 17 17 C 1.50706 * 109.46577 * 170.00012 * 16 15 14 18 18 O 1.21292 * 120.00254 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99762 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99962 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99996 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99667 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00253 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99802 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47118 * 90.00030 * 24 22 20 26 26 H 1.48499 * 109.47293 * 210.00034 * 24 22 20 27 27 H 1.48504 * 109.47104 * 330.00279 * 24 22 20 28 28 C 1.47481 * 87.83240 * 27.01037 * 15 14 13 29 29 H 1.08997 * 109.46948 * 60.00100 * 1 2 3 30 30 H 1.09000 * 109.47054 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47030 * 300.00074 * 1 2 3 32 32 H 0.96999 * 120.00150 * 265.00365 * 4 2 1 33 33 H 1.09002 * 115.55432 * 179.97438 * 8 7 5 34 34 H 1.08999 * 117.50531 * 0.02562 * 9 8 7 35 35 H 1.09007 * 117.49973 * 145.02366 * 9 8 7 36 36 H 1.08996 * 117.49947 * 214.98226 * 10 8 7 37 37 H 1.09003 * 117.49747 * 359.97438 * 10 8 7 38 38 H 1.08997 * 117.49799 * 0.02562 * 11 7 5 39 39 H 1.08992 * 117.49983 * 145.02498 * 11 7 5 40 40 H 1.09004 * 117.50033 * 214.98081 * 12 7 5 41 41 H 1.09003 * 117.50155 * 359.97438 * 12 7 5 42 42 H 1.08998 * 113.38372 * 73.08450 * 13 2 1 43 43 H 1.09000 * 113.47310 * 105.55876 * 14 13 2 44 44 H 1.09005 * 113.53007 * 335.10763 * 14 13 2 45 45 H 1.09000 * 109.46894 * 50.00246 * 16 15 14 46 46 H 1.09000 * 109.47263 * 289.99812 * 16 15 14 47 47 H 0.96999 * 120.00047 * 0.02562 * 19 17 16 48 48 H 0.96996 * 119.99717 * 179.97438 * 23 22 20 49 49 H 1.08996 * 113.47284 * 87.75825 * 28 15 14 50 50 H 1.08997 * 113.47252 * 218.21878 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1471 -0.0182 -2.3571 6 8 1.8583 1.1584 -2.4117 7 6 2.6490 -0.7287 -3.5877 8 6 2.7536 0.1305 -4.8493 9 6 3.1437 1.5994 -4.6732 10 6 1.7060 1.2283 -5.0453 11 6 2.2596 -2.1979 -3.7634 12 6 3.6966 -1.8265 -3.3918 13 6 2.0400 -0.7212 1.2493 14 6 1.5894 -0.0839 2.5711 15 7 2.9423 -0.3452 3.0966 16 6 3.4288 0.7932 3.8874 17 6 4.6941 0.4013 4.6062 18 8 5.1458 -0.7164 4.4731 19 7 5.3237 1.2929 5.3968 20 6 6.4745 0.9363 6.0511 21 1 6.8767 -0.0590 5.9326 22 6 7.1233 1.8554 6.8666 23 7 6.6336 3.0663 7.0111 24 14 8.6916 1.3697 7.7575 25 1 9.8640 1.6776 6.8995 26 1 8.7949 2.1308 9.0285 27 1 8.6629 -0.0854 8.0528 28 6 3.4347 -0.2733 1.7083 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2490 -1.6318 -1.1526 33 1 3.1170 -0.3833 -5.7393 34 1 3.3262 1.9536 -3.6586 35 1 3.7631 2.0520 -5.4476 36 1 1.3801 1.4367 -6.0642 37 1 0.9420 1.3380 -4.2756 38 1 1.6402 -2.6505 -2.9891 39 1 2.0779 -2.5526 -4.7778 40 1 4.4601 -1.9368 -4.1619 41 1 4.0232 -2.0345 -2.3728 42 1 1.9097 -1.8026 1.2079 43 1 0.8088 -0.6482 3.0813 44 1 1.3544 0.9771 2.4848 45 1 2.6707 1.0797 4.6163 46 1 3.6328 1.6348 3.2254 47 1 4.9623 2.1867 5.5034 48 1 7.0863 3.7077 7.5807 49 1 3.6926 0.7370 1.3909 50 1 4.2182 -0.9982 1.4874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276389941.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:59 Heat of formation + Delta-G solvation = -3.654106 kcal Electronic energy + Delta-G solvation = -28927.652978 eV Core-core repulsion = 24956.873885 eV Total energy + Delta-G solvation = -3970.779093 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.87840 -41.17307 -39.70457 -38.25124 -36.94407 -36.00116 -35.66327 -33.32881 -32.34918 -30.58569 -27.61662 -26.86534 -26.02333 -25.47011 -23.77593 -23.61947 -22.90047 -22.12005 -21.31211 -21.01882 -20.10012 -19.85490 -17.87841 -17.76938 -17.62966 -16.71150 -16.61799 -16.45494 -16.29541 -16.01439 -15.76349 -15.65823 -15.25808 -14.90993 -14.65778 -14.31780 -14.15090 -13.99785 -13.67609 -13.54629 -13.42494 -13.28574 -12.99233 -12.74362 -12.70280 -12.57886 -12.44103 -12.35013 -12.16011 -12.14221 -11.91082 -11.84739 -11.73036 -11.52861 -11.47886 -11.07187 -10.51046 -10.41142 -10.37233 -10.11419 -10.03280 -9.71021 -8.48387 -5.97465 1.36358 1.39699 1.48448 1.52944 2.03360 2.09903 2.27338 2.68005 2.80761 3.17129 3.24940 3.28302 3.43662 3.46662 3.56999 3.66362 3.93086 3.98998 4.12008 4.13234 4.20079 4.23092 4.31387 4.36156 4.37411 4.40653 4.44826 4.48299 4.51188 4.73831 4.74535 4.78306 4.81568 4.85978 4.86479 4.97619 5.01170 5.05122 5.15931 5.18508 5.28161 5.36431 5.37761 5.39166 5.42163 5.57047 5.88521 6.07106 6.55244 6.58653 7.11011 7.27108 7.54226 8.10557 8.69200 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016392 B = 0.002124 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.705433 B =13181.470547 C =13707.883982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.161 3.839 3 H 0.066 0.934 4 N -0.714 5.714 5 C 0.543 3.457 6 O -0.567 6.567 7 C -0.152 4.152 8 C -0.104 4.104 9 C -0.182 4.182 10 C -0.172 4.172 11 C -0.134 4.134 12 C -0.149 4.149 13 C -0.097 4.097 14 C 0.012 3.988 15 N -0.473 5.473 16 C 0.021 3.979 17 C 0.442 3.558 18 O -0.618 6.618 19 N -0.577 5.577 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.269 1.269 27 H -0.273 1.273 28 C 0.004 3.996 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.410 0.590 33 H 0.131 0.869 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.104 0.896 42 H 0.122 0.878 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.109 0.891 46 H 0.076 0.924 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.063 0.937 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.947 -7.483 -23.354 28.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.056 3.944 3 H 0.084 0.916 4 N -0.365 5.365 5 C 0.331 3.669 6 O -0.447 6.447 7 C -0.155 4.155 8 C -0.122 4.122 9 C -0.219 4.219 10 C -0.209 4.209 11 C -0.171 4.171 12 C -0.186 4.186 13 C -0.116 4.116 14 C -0.117 4.117 15 N -0.195 5.195 16 C -0.111 4.111 17 C 0.229 3.771 18 O -0.504 6.504 19 N -0.214 5.214 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.125 4.125 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.247 0.753 33 H 0.149 0.851 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.130 0.870 39 H 0.140 0.860 40 H 0.136 0.864 41 H 0.123 0.877 42 H 0.140 0.860 43 H 0.123 0.877 44 H 0.101 0.899 45 H 0.127 0.873 46 H 0.094 0.906 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.081 0.919 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.642 -7.790 -22.878 27.752 hybrid contribution 0.856 1.159 0.459 1.512 sum -12.785 -6.632 -22.419 26.647 Atomic orbital electron populations 1.22066 0.93546 1.03191 1.02352 1.20832 0.95024 0.95885 0.82687 0.91559 1.45956 1.67089 1.14570 1.08924 1.19897 0.76420 0.86394 0.84143 1.90644 1.51548 1.17311 1.85168 1.20990 1.09136 0.91807 0.93553 1.21537 1.04798 0.89589 0.96314 1.22975 0.98720 0.97858 1.02375 1.22977 0.92815 1.03030 1.02037 1.23244 0.97602 0.91025 1.05262 1.23235 0.93143 0.97766 1.04443 1.22873 0.94221 1.01785 0.92761 1.23926 0.92793 1.01299 0.93703 1.68777 1.05208 1.36058 1.09454 1.22385 0.95524 0.93971 0.99171 1.20786 0.87670 0.85495 0.83139 1.90476 1.69379 1.22969 1.67585 1.41967 1.23599 1.14080 1.41784 1.19652 1.02193 0.99490 1.24966 0.90438 1.26065 1.02504 0.94855 0.97976 1.69674 1.41721 1.05148 1.39706 0.84920 0.77355 0.78250 0.77764 1.19605 1.19395 1.19732 1.23934 0.98512 1.00733 0.89308 0.93656 0.90730 0.90376 0.75292 0.85093 0.90320 0.88359 0.88027 0.89788 0.86961 0.85984 0.86416 0.87745 0.86008 0.87739 0.89859 0.87264 0.90581 0.77082 0.91280 0.91858 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.29 71.98 0.67 -1.63 16 2 C 0.16 2.87 2.47 44.99 0.11 2.98 16 3 H 0.07 1.54 7.33 -2.38 -0.02 1.52 16 4 N -0.71 -11.55 4.88 -442.52 -2.16 -13.71 16 5 C 0.54 11.21 7.20 87.66 0.63 11.84 16 6 O -0.57 -15.91 11.50 -3.03 -0.03 -15.95 16 7 C -0.15 -2.30 2.47 -52.93 -0.13 -2.43 16 8 C -0.10 -1.68 5.85 -10.79 -0.06 -1.74 16 9 C -0.18 -3.75 9.66 30.62 0.30 -3.46 16 10 C -0.17 -3.29 9.66 30.62 0.30 -3.00 16 11 C -0.13 -1.13 9.59 30.60 0.29 -0.84 16 12 C -0.15 -1.54 9.59 30.60 0.29 -1.25 16 13 C -0.10 -1.82 3.64 -10.45 -0.04 -1.86 16 14 C 0.01 0.24 6.33 83.57 0.53 0.77 16 15 N -0.47 -15.07 5.82 -932.55 -5.43 -20.50 16 16 C 0.02 0.75 5.30 85.56 0.45 1.21 16 17 C 0.44 21.89 7.85 87.66 0.69 22.57 16 18 O -0.62 -35.71 16.01 -3.07 -0.05 -35.76 16 19 N -0.58 -30.57 5.29 -306.98 -1.62 -32.19 16 20 C -0.33 -19.43 9.68 84.04 0.81 -18.61 16 21 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -50.67 13.05 21.66 0.28 -50.39 16 24 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 C 0.00 0.12 7.28 83.57 0.61 0.73 16 29 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.08 1.04 7.48 -2.39 -0.02 1.02 16 32 H 0.41 4.64 6.79 -92.71 -0.63 4.01 16 33 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 2.11 6.28 -2.39 -0.01 2.09 16 35 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 2.02 6.28 -2.39 -0.01 2.01 16 38 H 0.11 0.70 7.54 -2.39 -0.02 0.68 16 39 H 0.12 0.69 8.14 -2.39 -0.02 0.68 16 40 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.10 1.07 7.55 -2.39 -0.02 1.05 16 42 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.08 1.55 7.87 -2.38 -0.02 1.53 16 45 H 0.11 3.40 8.08 -2.39 -0.02 3.38 16 46 H 0.08 2.43 7.30 -2.39 -0.02 2.42 16 47 H 0.40 19.88 7.90 -92.71 -0.73 19.14 16 48 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 49 H 0.06 1.80 7.21 -2.39 -0.02 1.78 16 50 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -76.12 403.28 -1.47 -77.58 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -0.40 Total: 40.26 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 5.92 Total: 4.95 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -8.93 Total: -116.79 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -0.08 Total: -51.71 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -76.12 -1.47 -77.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276389941.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.928 kcal (2) G-P(sol) polarization free energy of solvation -76.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds