Wall clock time and date at job start Tue Mar 31 2020 18:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32876 * 1 3 3 C 1.47112 * 119.99768 * 2 1 4 4 C 1.50695 * 120.00374 * 5.49689 * 3 2 1 5 5 C 1.32874 * 119.99840 * 185.49942 * 3 2 1 6 6 C 1.50706 * 119.99828 * 6.24320 * 5 3 2 7 7 C 1.50696 * 109.46913 * 126.12962 * 6 5 3 8 8 O 1.21290 * 119.99905 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00005 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99620 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.47248 * 35.00382 * 10 9 7 12 12 C 1.53000 * 109.47216 * 274.99785 * 10 9 7 13 13 C 1.53006 * 109.46534 * 154.99944 * 10 9 7 14 14 C 1.53934 * 113.73500 * 278.76674 * 13 10 9 15 15 N 1.48193 * 86.09964 * 221.95896 * 14 13 10 16 16 C 1.46902 * 111.06714 * 137.51914 * 15 14 13 17 17 C 1.50708 * 109.46835 * 90.57011 * 16 15 14 18 18 O 1.21283 * 119.99984 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99490 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99681 * 179.97438 * 19 17 16 21 21 H 1.07994 * 119.99622 * 0.02562 * 20 19 17 22 22 C 1.38944 * 120.00054 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00097 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00043 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46874 * 60.00455 * 24 22 20 26 26 H 1.48502 * 109.47328 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47567 * 300.00594 * 24 22 20 28 28 C 1.47956 * 90.79952 * 24.60258 * 15 14 13 29 29 H 1.07997 * 120.00228 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99836 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.99836 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47130 * 269.99952 * 4 3 2 33 33 H 1.08994 * 109.47069 * 29.99919 * 4 3 2 34 34 H 1.08997 * 109.47428 * 150.00312 * 4 3 2 35 35 H 1.08001 * 120.00431 * 186.25337 * 5 3 2 36 36 H 1.08998 * 109.47184 * 6.13114 * 6 5 3 37 37 H 1.09001 * 109.47000 * 246.12737 * 6 5 3 38 38 H 0.96998 * 119.99615 * 0.02562 * 9 7 6 39 39 H 1.08993 * 109.47058 * 300.00145 * 12 10 9 40 40 H 1.09004 * 109.46757 * 180.02562 * 12 10 9 41 41 H 1.08997 * 109.46863 * 60.00964 * 12 10 9 42 42 H 1.08997 * 112.93722 * 50.33548 * 13 10 9 43 43 H 1.09001 * 113.75902 * 336.23899 * 14 13 10 44 44 H 1.08994 * 113.75791 * 107.60386 * 14 13 10 45 45 H 1.09005 * 109.46798 * 210.56218 * 16 15 14 46 46 H 1.08993 * 109.47620 * 330.56858 * 16 15 14 47 47 H 0.96998 * 120.00637 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00298 * 179.97438 * 23 22 20 49 49 H 1.09007 * 113.75648 * 221.08699 * 28 15 14 50 50 H 1.08996 * 113.76296 * 89.71876 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3160 2.5761 0.1250 5 6 3.3884 1.2767 -0.1103 6 6 4.1250 -0.0109 -0.3763 7 6 5.0036 0.1544 -1.5894 8 8 5.0295 1.2137 -2.1795 9 7 5.7606 -0.8748 -2.0185 10 6 6.6143 -0.7142 -3.1982 11 1 7.0056 0.3026 -3.2277 12 6 5.7941 -0.9821 -4.4616 13 6 7.7770 -1.7061 -3.1250 14 6 8.9361 -1.2370 -2.2272 15 7 9.8328 -1.7540 -3.2878 16 6 10.9436 -0.8259 -3.5388 17 6 12.1075 -1.1837 -2.6509 18 8 12.0202 -2.1194 -1.8841 19 7 13.2451 -0.4633 -2.7083 20 6 14.3039 -0.7884 -1.9001 21 1 14.2264 -1.6221 -1.2180 22 6 15.4769 -0.0461 -1.9596 23 7 15.5713 0.9680 -2.7900 24 14 16.9191 -0.4886 -0.8580 25 1 17.3579 -1.8768 -1.1509 26 1 18.0418 0.4498 -1.1115 27 1 16.5041 -0.3904 0.5644 28 6 8.7656 -1.5895 -4.2992 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8687 -0.9353 0.0004 32 1 1.0504 2.9393 -0.8678 33 1 0.4093 2.4195 0.7092 34 1 1.9472 3.3115 0.6239 35 1 3.9369 2.2016 -0.0092 36 1 3.4060 -0.8105 -0.5546 37 1 4.7411 -0.2621 0.4871 38 1 5.7395 -1.7221 -1.5467 39 1 5.4029 -1.9989 -4.4320 40 1 6.4295 -0.8630 -5.3393 41 1 4.9659 -0.2754 -4.5137 42 1 7.4523 -2.7271 -2.9246 43 1 8.9836 -0.1555 -2.1007 44 1 9.0094 -1.7803 -1.2852 45 1 11.2478 -0.8975 -4.5831 46 1 10.6217 0.1928 -3.3231 47 1 13.3149 0.2852 -3.3212 48 1 16.3901 1.4865 -2.8313 49 1 8.7030 -2.4140 -5.0095 50 1 8.7631 -0.6113 -4.7799 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276413603.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:51 Heat of formation + Delta-G solvation = -8.353660 kcal Electronic energy + Delta-G solvation = -27903.225480 eV Core-core repulsion = 23932.242598 eV Total energy + Delta-G solvation = -3970.982881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.55607 -39.56864 -37.78768 -37.25565 -35.38211 -33.85215 -32.58090 -31.54838 -31.15894 -30.14523 -29.31636 -26.43288 -25.72698 -25.54810 -24.07466 -22.40740 -21.76002 -20.73176 -19.63580 -19.16181 -18.00163 -17.83209 -17.24824 -16.73088 -16.17517 -16.06783 -15.42095 -15.15052 -14.97514 -14.85716 -14.61103 -14.18853 -13.95454 -13.72022 -13.59552 -13.43530 -13.07672 -12.96637 -12.78783 -12.69465 -12.55526 -12.38640 -12.26942 -11.89075 -11.84546 -11.59372 -11.36500 -11.04604 -11.02074 -10.93578 -10.80663 -10.66794 -10.64876 -10.42115 -10.18252 -10.00859 -9.46171 -9.30518 -8.68921 -8.56570 -8.13885 -7.92770 -6.38412 -3.79233 0.98815 2.45509 2.60405 3.04045 3.21947 3.27205 3.31663 3.90988 3.96558 4.22753 4.28605 4.32728 4.50686 4.55216 4.57515 4.74284 4.91669 5.00224 5.03718 5.10139 5.17168 5.17864 5.22590 5.25318 5.30770 5.34489 5.39929 5.41348 5.45636 5.52897 5.66337 5.69080 5.70979 5.76955 5.78103 5.92451 6.01329 6.02746 6.07186 6.16053 6.30977 6.34855 6.36925 6.58429 6.60442 7.19535 7.29183 7.57728 8.03803 8.09247 8.65806 9.21609 9.58365 10.10973 10.79433 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.001794 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.610743 B =15601.341196 C =16412.644920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.126 4.126 3 C -0.112 4.112 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.120 4.120 7 C 0.518 3.482 8 O -0.537 6.537 9 N -0.725 5.725 10 C 0.150 3.850 11 H 0.088 0.912 12 C -0.161 4.161 13 C -0.125 4.125 14 C 0.018 3.982 15 N -0.450 5.450 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.567 5.567 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.010 3.990 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.401 0.599 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.091 0.909 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.588 -0.748 0.924 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.143 4.143 3 C -0.112 4.112 4 C -0.172 4.172 5 C -0.135 4.135 6 C -0.160 4.160 7 C 0.304 3.696 8 O -0.414 6.414 9 N -0.376 5.376 10 C 0.045 3.955 11 H 0.106 0.894 12 C -0.219 4.219 13 C -0.144 4.144 14 C -0.111 4.111 15 N -0.172 5.172 16 C -0.122 4.122 17 C 0.232 3.768 18 O -0.460 6.460 19 N -0.205 5.205 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.120 4.120 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.235 0.765 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.122 0.878 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.109 0.891 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.095 -1.098 1.055 28.136 hybrid contribution 0.672 0.715 0.178 0.998 sum -27.422 -0.383 1.233 27.453 Atomic orbital electron populations 1.24437 0.95758 1.02080 0.99759 1.21969 0.95372 0.96298 1.00706 1.20566 0.93858 0.94385 1.02359 1.20781 1.00027 0.94175 1.02169 1.22804 0.94017 0.97812 0.98887 1.20854 0.99160 0.98757 0.97210 1.20530 0.79973 0.83720 0.85380 1.90714 1.65668 1.27023 1.57986 1.46084 1.44996 1.15477 1.31067 1.21048 0.89577 1.00140 0.84731 0.89390 1.22133 1.00616 1.01875 0.97292 1.23317 0.93203 0.99956 0.97962 1.24011 0.90561 0.99062 0.97456 1.68410 1.02669 1.42806 1.03269 1.22479 0.93974 0.94980 1.00790 1.19693 0.84138 0.85892 0.87103 1.90510 1.82601 1.30945 1.41905 1.41875 1.11898 1.29432 1.37251 1.19644 0.91037 1.14505 1.17655 0.88043 1.25245 0.99050 0.95836 0.97840 1.69603 1.28705 1.19115 1.37040 0.85923 0.79998 0.78257 0.80052 1.19914 1.20992 1.19969 1.23952 0.90949 1.01641 0.95433 0.88152 0.88077 0.86544 0.91276 0.91812 0.91551 0.86126 0.88017 0.87728 0.76511 0.92386 0.91349 0.92250 0.87826 0.91437 0.89139 0.89434 0.92477 0.77560 0.91877 0.89099 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.08 14.07 28.88 0.41 -0.68 16 2 C -0.13 -0.86 9.20 -37.83 -0.35 -1.21 16 3 C -0.11 -0.89 5.98 -102.88 -0.61 -1.50 16 4 C -0.11 -0.78 9.38 36.00 0.34 -0.44 16 5 C -0.12 -1.01 8.43 -36.15 -0.30 -1.32 16 6 C -0.12 -0.87 5.92 -29.03 -0.17 -1.04 16 7 C 0.52 5.29 7.79 -10.99 -0.09 5.21 16 8 O -0.54 -7.74 15.70 5.55 0.09 -7.66 16 9 N -0.72 -6.13 5.08 -53.80 -0.27 -6.40 16 10 C 0.15 1.45 2.38 -67.93 -0.16 1.29 16 11 H 0.09 1.06 7.41 -51.93 -0.39 0.67 16 12 C -0.16 -1.40 9.31 37.16 0.35 -1.06 16 13 C -0.13 -1.29 3.46 -89.68 -0.31 -1.60 16 14 C 0.02 0.25 7.53 -2.63 -0.02 0.23 16 15 N -0.45 -7.38 5.65 -239.52 -1.35 -8.73 16 16 C 0.01 0.18 5.28 -4.97 -0.03 0.15 16 17 C 0.45 10.86 7.83 -10.98 -0.09 10.77 16 18 O -0.58 -16.11 16.01 5.55 0.09 -16.02 16 19 N -0.57 -14.72 5.29 -10.96 -0.06 -14.78 16 20 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.92 13.05 55.50 0.72 -24.19 16 24 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 C 0.01 0.12 6.65 -2.76 -0.02 0.10 16 29 H 0.10 0.46 8.06 -52.49 -0.42 0.04 16 30 H 0.10 0.55 6.31 -52.49 -0.33 0.21 16 31 H 0.12 0.64 6.00 -52.49 -0.31 0.32 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.36 6.67 -51.93 -0.35 0.01 16 34 H 0.07 0.42 8.06 -51.93 -0.42 0.00 16 35 H 0.12 1.14 8.04 -52.49 -0.42 0.72 16 36 H 0.10 0.55 5.41 -51.93 -0.28 0.27 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.40 2.36 8.60 -40.82 -0.35 2.01 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.55 7.51 -51.93 -0.39 0.16 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.97 7.33 -51.93 -0.38 0.59 16 44 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 46 H 0.06 0.94 7.39 -51.93 -0.38 0.56 16 47 H 0.39 9.70 7.90 -40.82 -0.32 9.37 16 48 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 50 H 0.07 0.75 7.88 -51.93 -0.41 0.34 16 LS Contribution 413.15 15.07 6.23 6.23 Total: -1.00 -35.02 413.15 -8.93 -43.95 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -8.05 Total: 10.52 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -1.30 Total: 0.76 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.96 Total: -54.11 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.18 Total: -23.68 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.02 -8.93 -43.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276413603.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.597 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds