Wall clock time and date at job start Tue Mar 31 2020 18:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32876 * 1 3 3 C 1.47112 * 119.99768 * 2 1 4 4 C 1.50695 * 120.00374 * 5.49689 * 3 2 1 5 5 C 1.32874 * 119.99840 * 185.49942 * 3 2 1 6 6 C 1.50706 * 119.99828 * 6.24320 * 5 3 2 7 7 C 1.50696 * 109.46913 * 126.12962 * 6 5 3 8 8 O 1.21290 * 119.99905 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00005 * 180.02562 * 7 6 5 10 10 C 1.46502 * 119.99620 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.47248 * 35.00382 * 10 9 7 12 12 C 1.53000 * 109.47216 * 274.99785 * 10 9 7 13 13 C 1.53006 * 109.46534 * 154.99944 * 10 9 7 14 14 C 1.53934 * 113.73500 * 278.76674 * 13 10 9 15 15 N 1.48193 * 86.09964 * 221.95896 * 14 13 10 16 16 C 1.46902 * 111.06714 * 137.51914 * 15 14 13 17 17 C 1.50708 * 109.46835 * 90.57011 * 16 15 14 18 18 O 1.21283 * 119.99984 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99490 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99681 * 179.97438 * 19 17 16 21 21 H 1.07994 * 119.99622 * 0.02562 * 20 19 17 22 22 C 1.38944 * 120.00054 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00097 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00043 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46874 * 60.00455 * 24 22 20 26 26 H 1.48502 * 109.47328 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47567 * 300.00594 * 24 22 20 28 28 C 1.47956 * 90.79952 * 24.60258 * 15 14 13 29 29 H 1.07997 * 120.00228 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99836 * 0.02562 * 1 2 3 31 31 H 1.07997 * 119.99836 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47130 * 269.99952 * 4 3 2 33 33 H 1.08994 * 109.47069 * 29.99919 * 4 3 2 34 34 H 1.08997 * 109.47428 * 150.00312 * 4 3 2 35 35 H 1.08001 * 120.00431 * 186.25337 * 5 3 2 36 36 H 1.08998 * 109.47184 * 6.13114 * 6 5 3 37 37 H 1.09001 * 109.47000 * 246.12737 * 6 5 3 38 38 H 0.96998 * 119.99615 * 0.02562 * 9 7 6 39 39 H 1.08993 * 109.47058 * 300.00145 * 12 10 9 40 40 H 1.09004 * 109.46757 * 180.02562 * 12 10 9 41 41 H 1.08997 * 109.46863 * 60.00964 * 12 10 9 42 42 H 1.08997 * 112.93722 * 50.33548 * 13 10 9 43 43 H 1.09001 * 113.75902 * 336.23899 * 14 13 10 44 44 H 1.08994 * 113.75791 * 107.60386 * 14 13 10 45 45 H 1.09005 * 109.46798 * 210.56218 * 16 15 14 46 46 H 1.08993 * 109.47620 * 330.56858 * 16 15 14 47 47 H 0.96998 * 120.00637 * 359.97438 * 19 17 16 48 48 H 0.97000 * 120.00298 * 179.97438 * 23 22 20 49 49 H 1.09007 * 113.75648 * 221.08699 * 28 15 14 50 50 H 1.08996 * 113.76296 * 89.71876 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3160 2.5761 0.1250 5 6 3.3884 1.2767 -0.1103 6 6 4.1250 -0.0109 -0.3763 7 6 5.0036 0.1544 -1.5894 8 8 5.0295 1.2137 -2.1795 9 7 5.7606 -0.8748 -2.0185 10 6 6.6143 -0.7142 -3.1982 11 1 7.0056 0.3026 -3.2277 12 6 5.7941 -0.9821 -4.4616 13 6 7.7770 -1.7061 -3.1250 14 6 8.9361 -1.2370 -2.2272 15 7 9.8328 -1.7540 -3.2878 16 6 10.9436 -0.8259 -3.5388 17 6 12.1075 -1.1837 -2.6509 18 8 12.0202 -2.1194 -1.8841 19 7 13.2451 -0.4633 -2.7083 20 6 14.3039 -0.7884 -1.9001 21 1 14.2264 -1.6221 -1.2180 22 6 15.4769 -0.0461 -1.9596 23 7 15.5713 0.9680 -2.7900 24 14 16.9191 -0.4886 -0.8580 25 1 17.3579 -1.8768 -1.1509 26 1 18.0418 0.4498 -1.1115 27 1 16.5041 -0.3904 0.5644 28 6 8.7656 -1.5895 -4.2992 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8687 -0.9353 0.0004 32 1 1.0504 2.9393 -0.8678 33 1 0.4093 2.4195 0.7092 34 1 1.9472 3.3115 0.6239 35 1 3.9369 2.2016 -0.0092 36 1 3.4060 -0.8105 -0.5546 37 1 4.7411 -0.2621 0.4871 38 1 5.7395 -1.7221 -1.5467 39 1 5.4029 -1.9989 -4.4320 40 1 6.4295 -0.8630 -5.3393 41 1 4.9659 -0.2754 -4.5137 42 1 7.4523 -2.7271 -2.9246 43 1 8.9836 -0.1555 -2.1007 44 1 9.0094 -1.7803 -1.2852 45 1 11.2478 -0.8975 -4.5831 46 1 10.6217 0.1928 -3.3231 47 1 13.3149 0.2852 -3.3212 48 1 16.3901 1.4865 -2.8313 49 1 8.7030 -2.4140 -5.0095 50 1 8.7631 -0.6113 -4.7799 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276413603.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:50 Heat of formation + Delta-G solvation = -34.169190 kcal Electronic energy + Delta-G solvation = -27904.344925 eV Core-core repulsion = 23932.242598 eV Total energy + Delta-G solvation = -3972.102327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.55712 -40.58320 -39.57744 -37.86543 -36.33328 -35.88726 -33.36860 -33.20161 -32.28403 -30.95148 -30.27433 -27.61525 -26.98696 -26.44753 -25.50807 -23.21504 -22.53707 -21.53927 -20.98962 -20.55809 -19.89593 -18.53989 -18.05409 -17.79780 -17.56453 -16.80201 -16.61823 -16.55937 -16.25496 -15.89858 -15.73192 -15.58480 -15.18499 -14.91424 -14.53888 -14.32085 -14.17818 -14.00895 -13.68652 -13.55073 -13.50709 -13.39456 -13.23877 -12.98790 -12.90069 -12.72400 -12.66701 -12.44747 -12.43348 -12.14295 -11.83051 -11.80329 -11.64637 -11.52392 -11.50040 -11.32094 -10.85565 -10.38552 -10.11528 -10.02256 -9.61356 -9.12244 -8.47226 -5.96473 0.44424 1.38862 1.40169 1.51552 1.68034 2.03127 2.04842 2.27809 2.36721 2.77634 3.18606 3.31489 3.46481 3.64591 3.74072 3.90615 4.00886 4.12273 4.17328 4.22818 4.23911 4.33813 4.42125 4.44805 4.48020 4.51344 4.53504 4.59120 4.67793 4.76404 4.78245 4.79360 4.82759 4.84468 4.94511 5.01013 5.14540 5.20975 5.32527 5.38980 5.42952 5.50319 5.56769 5.59323 5.82462 5.89431 6.04794 6.08124 6.59683 6.60727 7.11883 7.31153 7.55436 8.11776 8.70009 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017632 B = 0.001794 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.610743 B =15601.341196 C =16412.644920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.145 4.145 3 C -0.111 4.111 4 C -0.119 4.119 5 C -0.142 4.142 6 C -0.111 4.111 7 C 0.514 3.486 8 O -0.586 6.586 9 N -0.714 5.714 10 C 0.155 3.845 11 H 0.063 0.937 12 C -0.154 4.154 13 C -0.096 4.096 14 C 0.010 3.990 15 N -0.482 5.482 16 C 0.023 3.977 17 C 0.441 3.559 18 O -0.618 6.618 19 N -0.576 5.576 20 C -0.336 4.336 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.015 3.985 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.131 0.869 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.416 0.584 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.122 0.878 43 H 0.061 0.939 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.073 0.927 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.108 0.892 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.971 -1.791 0.594 30.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.111 4.111 4 C -0.175 4.175 5 C -0.160 4.160 6 C -0.150 4.150 7 C 0.302 3.698 8 O -0.466 6.466 9 N -0.366 5.366 10 C 0.050 3.950 11 H 0.081 0.919 12 C -0.212 4.212 13 C -0.116 4.116 14 C -0.119 4.119 15 N -0.205 5.205 16 C -0.109 4.109 17 C 0.229 3.771 18 O -0.504 6.504 19 N -0.214 5.214 20 C -0.465 4.465 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.113 4.113 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.148 0.852 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.253 0.747 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.140 0.860 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.126 0.874 46 H 0.091 0.909 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.127 0.873 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -29.492 -2.155 0.714 29.579 hybrid contribution 1.012 1.044 0.281 1.481 sum -28.481 -1.112 0.994 28.520 Atomic orbital electron populations 1.24672 0.95573 1.03057 0.97761 1.22101 0.95860 0.96180 1.02131 1.20824 0.93811 0.95435 1.01007 1.20838 1.00508 0.93891 1.02289 1.22797 0.94508 0.97918 1.00809 1.20850 0.99166 0.98727 0.96257 1.21080 0.79916 0.83101 0.85723 1.90693 1.67324 1.28926 1.59630 1.46003 1.44063 1.15886 1.30690 1.20890 0.89698 0.98555 0.85875 0.91865 1.22070 0.99974 1.02399 0.96782 1.23124 0.92030 1.00695 0.95702 1.24023 0.92272 0.98500 0.97076 1.68377 1.03525 1.42859 1.05714 1.22348 0.92302 0.96139 1.00075 1.20808 0.84927 0.84583 0.86804 1.90470 1.83511 1.32620 1.43758 1.41964 1.12229 1.29918 1.37307 1.19633 0.92873 1.15047 1.18957 0.90394 1.26053 1.00996 0.95379 0.98887 1.69668 1.29583 1.19367 1.37578 0.84978 0.76906 0.78263 0.78109 1.19633 1.19393 1.19744 1.24074 0.88881 1.03102 0.95290 0.86530 0.87825 0.85176 0.91439 0.90507 0.91700 0.88037 0.85718 0.85963 0.74723 0.90626 0.90447 0.93855 0.86032 0.92067 0.90810 0.87418 0.90884 0.77119 0.91303 0.87335 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 14.07 66.64 0.94 -0.73 16 2 C -0.15 -1.72 9.20 23.42 0.22 -1.50 16 3 C -0.11 -1.70 5.98 -18.71 -0.11 -1.81 16 4 C -0.12 -1.57 9.38 71.23 0.67 -0.90 16 5 C -0.14 -2.48 8.43 24.51 0.21 -2.27 16 6 C -0.11 -1.49 5.92 29.10 0.17 -1.31 16 7 C 0.51 10.27 7.79 87.66 0.68 10.95 16 8 O -0.59 -17.33 15.70 -3.06 -0.05 -17.38 16 9 N -0.71 -11.09 5.08 -442.52 -2.25 -13.33 16 10 C 0.16 2.79 2.38 44.99 0.11 2.89 16 11 H 0.06 1.50 7.41 -2.39 -0.02 1.49 16 12 C -0.15 -2.36 9.31 71.98 0.67 -1.69 16 13 C -0.10 -1.80 3.46 -10.14 -0.04 -1.83 16 14 C 0.01 0.28 7.53 86.36 0.65 0.93 16 15 N -0.48 -15.34 5.65 -911.70 -5.15 -20.49 16 16 C 0.02 0.82 5.28 85.56 0.45 1.28 16 17 C 0.44 21.86 7.83 87.66 0.69 22.55 16 18 O -0.62 -35.54 16.01 -3.04 -0.05 -35.59 16 19 N -0.58 -30.59 5.29 -306.99 -1.62 -32.21 16 20 C -0.34 -19.56 9.68 84.04 0.81 -18.74 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -50.65 13.05 21.66 0.28 -50.37 16 24 Si 0.99 43.66 29.55 68.60 2.03 45.69 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 C 0.02 0.32 6.65 86.41 0.57 0.89 16 29 H 0.12 0.73 8.06 -2.91 -0.02 0.71 16 30 H 0.10 0.91 6.31 -2.91 -0.02 0.90 16 31 H 0.13 1.10 6.00 -2.91 -0.02 1.08 16 32 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.08 0.78 6.67 -2.39 -0.02 0.77 16 34 H 0.06 0.85 8.06 -2.39 -0.02 0.83 16 35 H 0.10 2.10 8.04 -2.91 -0.02 2.07 16 36 H 0.13 1.06 5.41 -2.39 -0.01 1.05 16 37 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.42 3.94 8.60 -92.71 -0.80 3.15 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 1.05 7.51 -2.39 -0.02 1.03 16 41 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.12 1.90 8.14 -2.39 -0.02 1.89 16 43 H 0.06 1.77 7.33 -2.39 -0.02 1.75 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.11 3.38 8.08 -2.38 -0.02 3.36 16 46 H 0.07 2.36 7.39 -2.39 -0.02 2.35 16 47 H 0.40 19.91 7.90 -92.71 -0.73 19.18 16 48 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 49 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 50 H 0.08 1.55 7.88 -2.39 -0.02 1.53 16 Total: -1.00 -78.19 413.15 -0.23 -78.41 By element: Atomic # 1 Polarization: 37.40 SS G_CDS: -0.58 Total: 36.82 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 7.16 Total: 8.44 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -8.74 Total: -116.40 kcal Atomic # 8 Polarization: -52.87 SS G_CDS: -0.10 Total: -52.97 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -78.19 -0.23 -78.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276413603.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.244 kcal (2) G-P(sol) polarization free energy of solvation -78.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds