Wall clock time and date at job start Tue Mar 31 2020 18:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32878 * 1 3 3 C 1.47109 * 120.00238 * 2 1 4 4 C 1.50703 * 120.00394 * 3.07714 * 3 2 1 5 5 C 1.32873 * 120.00219 * 183.08222 * 3 2 1 6 6 C 1.50704 * 119.99502 * 354.07818 * 5 3 2 7 7 C 1.50695 * 109.46940 * 125.41420 * 6 5 3 8 8 O 1.21277 * 120.00302 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00044 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00088 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47211 * 324.99728 * 10 9 7 12 12 C 1.53000 * 109.47253 * 85.00108 * 10 9 7 13 13 C 1.53001 * 109.47173 * 204.99873 * 10 9 7 14 14 C 1.53933 * 113.73465 * 158.50322 * 13 10 9 15 15 N 1.48186 * 86.10536 * 221.95690 * 14 13 10 16 16 C 1.46898 * 111.07070 * 137.51677 * 15 14 13 17 17 C 1.50700 * 109.46826 * 90.57086 * 16 15 14 18 18 O 1.21294 * 119.99872 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00109 * 180.02562 * 17 16 15 20 20 C 1.37099 * 120.00246 * 180.02562 * 19 17 16 21 21 H 1.08005 * 119.99845 * 359.97438 * 20 19 17 22 22 C 1.38948 * 120.00547 * 179.97438 * 20 19 17 23 23 N 1.31419 * 119.99556 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00544 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46909 * 59.99955 * 24 22 20 26 26 H 1.48503 * 109.47321 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47171 * 300.00311 * 24 22 20 28 28 C 1.47958 * 90.79618 * 24.60059 * 15 14 13 29 29 H 1.07994 * 120.00461 * 179.97438 * 1 2 3 30 30 H 1.08003 * 119.99146 * 0.02562 * 1 2 3 31 31 H 1.07995 * 119.99460 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47412 * 270.00557 * 4 3 2 33 33 H 1.09008 * 109.46826 * 30.00167 * 4 3 2 34 34 H 1.08994 * 109.47653 * 150.00045 * 4 3 2 35 35 H 1.07999 * 120.00180 * 174.07987 * 5 3 2 36 36 H 1.08998 * 109.47161 * 5.41327 * 6 5 3 37 37 H 1.09001 * 109.46700 * 245.41018 * 6 5 3 38 38 H 0.97003 * 119.99878 * 359.97438 * 9 7 6 39 39 H 1.08997 * 109.47637 * 184.63915 * 12 10 9 40 40 H 1.08998 * 109.47024 * 304.64358 * 12 10 9 41 41 H 1.09004 * 109.47396 * 64.63482 * 12 10 9 42 42 H 1.08997 * 112.94369 * 290.07372 * 13 10 9 43 43 H 1.08999 * 113.75881 * 336.24566 * 14 13 10 44 44 H 1.09002 * 113.75891 * 107.60432 * 14 13 10 45 45 H 1.08998 * 109.47397 * 210.57098 * 16 15 14 46 46 H 1.09002 * 109.47165 * 330.57380 * 16 15 14 47 47 H 0.97004 * 120.00151 * 359.97438 * 19 17 16 48 48 H 0.96995 * 119.99937 * 179.97438 * 23 22 20 49 49 H 1.09002 * 113.76304 * 221.08418 * 28 15 14 50 50 H 1.09003 * 113.86126 * 89.72638 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3288 0.0000 0.0000 3 6 2.0644 1.2740 0.0000 4 6 1.3126 2.5782 0.0701 5 6 3.3917 1.2748 -0.0619 6 6 4.1497 -0.0261 0.0026 7 6 5.0592 -0.1373 -1.1938 8 8 5.0886 0.7519 -2.0179 9 7 5.8400 -1.2250 -1.3480 10 6 6.7237 -1.3334 -2.5113 11 1 6.2426 -0.8779 -3.3768 12 6 8.0405 -0.6105 -2.2206 13 6 7.0054 -2.8089 -2.8022 14 6 7.4613 -3.0794 -4.2473 15 7 6.5680 -4.2608 -4.2007 16 6 5.8086 -4.3983 -5.4507 17 6 6.5799 -5.2626 -6.4145 18 8 7.6561 -5.7196 -6.0917 19 7 6.0739 -5.5279 -7.6352 20 6 6.7753 -6.3147 -8.5119 21 1 7.7337 -6.7216 -8.2244 22 6 6.2535 -6.5887 -9.7701 23 7 5.0872 -6.0940 -10.1197 24 14 7.2095 -7.6601 -10.9649 25 1 7.4227 -9.0017 -10.3650 26 1 6.4416 -7.7996 -12.2283 27 1 8.5241 -7.0312 -11.2509 28 6 5.7460 -3.6236 -3.1484 29 1 -0.5400 -0.9352 -0.0004 30 1 -0.5399 0.9354 -0.0004 31 1 1.8687 -0.9353 0.0004 32 1 1.0835 2.9203 -0.9392 33 1 0.3850 2.4336 0.6240 34 1 1.9254 3.3242 0.5761 35 1 3.9272 2.2077 -0.1583 36 1 3.4450 -0.8577 0.0019 37 1 4.7449 -0.0549 0.9154 38 1 5.8168 -1.9361 -0.6886 39 1 8.6651 -0.6199 -3.1138 40 1 7.8333 0.4202 -1.9330 41 1 8.5612 -1.1168 -1.4078 42 1 7.6374 -3.2775 -2.0478 43 1 7.1439 -2.3165 -4.9581 44 1 8.5185 -3.3301 -4.3346 45 1 4.8437 -4.8599 -5.2407 46 1 5.6521 -3.4135 -5.8909 47 1 5.2130 -5.1628 -7.8932 48 1 4.7230 -6.2850 -10.9982 49 1 5.4351 -4.3081 -2.3591 50 1 4.9251 -3.0197 -3.5352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276413604.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:53 Heat of formation + Delta-G solvation = -33.153077 kcal Electronic energy + Delta-G solvation = -28049.121150 eV Core-core repulsion = 24077.062885 eV Total energy + Delta-G solvation = -3972.058265 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56776 -40.56463 -39.57078 -37.85172 -36.32669 -35.88509 -33.36275 -33.19230 -32.26298 -30.96773 -30.30645 -27.45835 -27.12690 -26.44154 -25.53584 -23.15705 -22.53368 -21.48119 -20.99519 -20.64802 -19.90184 -18.51684 -18.05010 -17.85364 -17.43230 -16.76090 -16.72571 -16.55377 -16.25399 -16.02774 -15.66706 -15.46781 -15.24412 -14.79740 -14.74170 -14.23970 -14.09687 -14.02429 -13.71138 -13.54402 -13.49119 -13.40403 -13.23241 -12.99415 -12.92113 -12.81639 -12.47064 -12.44183 -12.39478 -12.14729 -11.92042 -11.85290 -11.59558 -11.52527 -11.49980 -11.33536 -10.82795 -10.38895 -10.09766 -10.02495 -9.62932 -9.10095 -8.47442 -5.96610 0.46703 1.38795 1.40082 1.51528 1.70944 2.04149 2.05109 2.27711 2.33841 2.76533 3.18329 3.34509 3.44203 3.65038 3.76435 3.91133 4.01951 4.11307 4.16410 4.19389 4.24245 4.34243 4.39021 4.46900 4.48771 4.50411 4.53392 4.64047 4.69944 4.75699 4.77883 4.79891 4.82419 4.83268 4.95803 5.00886 5.16915 5.19922 5.33420 5.38650 5.41895 5.50924 5.55342 5.61235 5.83637 5.88855 6.06063 6.07426 6.59379 6.64337 7.11690 7.34689 7.55107 8.11409 8.69875 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.001929 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.266801 B =14510.308858 C =15687.063931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.145 4.145 3 C -0.113 4.113 4 C -0.119 4.119 5 C -0.138 4.138 6 C -0.111 4.111 7 C 0.513 3.487 8 O -0.587 6.587 9 N -0.711 5.711 10 C 0.157 3.843 11 H 0.063 0.937 12 C -0.156 4.156 13 C -0.097 4.097 14 C 0.013 3.987 15 N -0.481 5.481 16 C 0.023 3.977 17 C 0.442 3.558 18 O -0.617 6.617 19 N -0.577 5.577 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.270 1.270 27 H -0.272 1.272 28 C 0.013 3.987 29 H 0.113 0.887 30 H 0.105 0.895 31 H 0.128 0.872 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.417 0.583 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.075 0.925 42 H 0.122 0.878 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.073 0.927 47 H 0.395 0.605 48 H 0.278 0.722 49 H 0.108 0.892 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.403 14.635 25.157 30.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.163 4.163 3 C -0.113 4.113 4 C -0.176 4.176 5 C -0.157 4.157 6 C -0.150 4.150 7 C 0.301 3.699 8 O -0.467 6.467 9 N -0.363 5.363 10 C 0.052 3.948 11 H 0.081 0.919 12 C -0.215 4.215 13 C -0.116 4.116 14 C -0.117 4.117 15 N -0.203 5.203 16 C -0.108 4.108 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.464 4.464 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.196 1.196 26 H -0.194 1.194 27 H -0.197 1.197 28 C -0.115 4.115 29 H 0.131 0.869 30 H 0.123 0.877 31 H 0.146 0.854 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.125 0.875 36 H 0.139 0.861 37 H 0.149 0.851 38 H 0.255 0.745 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.140 0.860 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.124 0.876 46 H 0.091 0.909 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.126 0.874 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.519 14.269 24.692 29.255 hybrid contribution -0.327 0.161 -1.316 1.366 sum -6.846 14.430 23.376 28.312 Atomic orbital electron populations 1.24659 0.95694 1.02977 0.98136 1.22132 0.95828 0.96396 1.01915 1.20814 0.94049 0.95259 1.01168 1.20840 1.00616 0.93905 1.02220 1.22821 0.94240 0.98060 1.00576 1.20948 0.98492 0.98626 0.96912 1.21167 0.79991 0.81178 0.87542 1.90704 1.68774 1.41003 1.46210 1.45928 1.41962 1.22115 1.26280 1.20803 0.90897 0.94250 0.88880 0.91911 1.22089 0.96474 1.00029 1.02872 1.23142 0.97753 0.93646 0.97102 1.23995 0.99658 0.91380 0.96651 1.68381 1.12631 1.34628 1.04701 1.22340 0.97601 0.99125 0.91768 1.20787 0.87672 0.85421 0.83192 1.90477 1.24795 1.57207 1.77806 1.41968 1.20967 1.45767 1.12738 1.19629 1.03896 1.27447 0.95386 0.90363 1.26074 0.97230 0.99154 0.99002 1.69673 1.18313 1.45682 1.22600 0.84971 0.77939 0.78257 0.77056 1.19632 1.19408 1.19703 1.24041 0.95408 0.96618 0.95429 0.86879 0.87699 0.85402 0.91874 0.90481 0.91152 0.87480 0.86062 0.85051 0.74544 0.91662 0.93467 0.90554 0.86014 0.91425 0.90480 0.87613 0.90908 0.77136 0.91297 0.87354 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.98 14.09 66.64 0.94 -1.04 16 2 C -0.15 -1.85 9.33 23.42 0.22 -1.63 16 3 C -0.11 -1.66 5.98 -18.71 -0.11 -1.78 16 4 C -0.12 -1.47 9.44 71.24 0.67 -0.80 16 5 C -0.14 -2.15 8.43 24.51 0.21 -1.95 16 6 C -0.11 -1.22 5.98 29.10 0.17 -1.05 16 7 C 0.51 9.20 7.79 87.66 0.68 9.88 16 8 O -0.59 -16.58 15.70 -3.02 -0.05 -16.63 16 9 N -0.71 -9.57 4.87 -442.54 -2.16 -11.72 16 10 C 0.16 2.82 2.33 44.99 0.10 2.92 16 11 H 0.06 1.50 7.41 -2.39 -0.02 1.48 16 12 C -0.16 -2.68 9.47 71.98 0.68 -2.00 16 13 C -0.10 -1.82 3.35 -10.15 -0.03 -1.85 16 14 C 0.01 0.35 7.52 86.37 0.65 1.00 16 15 N -0.48 -15.29 5.65 -911.67 -5.15 -20.44 16 16 C 0.02 0.84 5.28 85.56 0.45 1.29 16 17 C 0.44 21.89 7.83 87.66 0.69 22.57 16 18 O -0.62 -35.49 16.01 -3.07 -0.05 -35.54 16 19 N -0.58 -30.61 5.29 -306.98 -1.62 -32.23 16 20 C -0.33 -19.46 9.68 84.04 0.81 -18.65 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.02 -0.82 5.50 84.92 0.47 -0.36 16 23 N -0.92 -50.78 13.05 21.66 0.28 -50.49 16 24 Si 0.99 43.72 29.55 68.60 2.03 45.75 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 28 C 0.01 0.28 7.31 86.41 0.63 0.91 16 29 H 0.11 0.97 8.06 -2.91 -0.02 0.95 16 30 H 0.10 1.05 6.24 -2.91 -0.02 1.03 16 31 H 0.13 1.25 5.76 -2.91 -0.02 1.23 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 0.75 6.56 -2.38 -0.02 0.73 16 34 H 0.07 0.78 8.07 -2.39 -0.02 0.76 16 35 H 0.11 1.90 8.06 -2.91 -0.02 1.87 16 36 H 0.12 0.90 5.24 -2.39 -0.01 0.89 16 37 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.42 2.84 8.60 -92.71 -0.80 2.04 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 1.88 7.33 -2.39 -0.02 1.87 16 44 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.11 3.36 8.08 -2.39 -0.02 3.34 16 46 H 0.07 2.37 7.39 -2.39 -0.02 2.35 16 47 H 0.40 19.94 7.90 -92.71 -0.73 19.21 16 48 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 49 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.07 1.48 7.88 -2.39 -0.02 1.46 16 Total: -1.00 -78.06 413.92 -0.06 -78.12 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: -0.58 Total: 35.72 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 7.23 Total: 7.48 kcal Atomic # 7 Polarization: -106.25 SS G_CDS: -8.65 Total: -114.90 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.10 Total: -52.17 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -78.06 -0.06 -78.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276413604.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.962 kcal (2) G-P(sol) polarization free energy of solvation -78.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds