Wall clock time and date at job start Tue Mar 31 2020 18:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47109 * 120.00369 * 2 1 4 4 C 1.50697 * 120.00088 * 359.97438 * 3 2 1 5 5 C 1.32874 * 119.99982 * 179.97438 * 3 2 1 6 6 C 1.50699 * 119.99913 * 174.08272 * 5 3 2 7 7 C 1.50700 * 109.47060 * 234.27771 * 6 5 3 8 8 O 1.21278 * 120.00317 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99901 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00194 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.46852 * 35.00257 * 10 9 7 12 12 C 1.52999 * 109.46932 * 275.00277 * 10 9 7 13 13 C 1.52994 * 109.47188 * 155.00015 * 10 9 7 14 14 C 1.53939 * 113.73586 * 278.76645 * 13 10 9 15 15 N 1.48189 * 86.09895 * 221.95906 * 14 13 10 16 16 C 1.46900 * 111.06874 * 137.52120 * 15 14 13 17 17 C 1.50703 * 109.47084 * 90.56362 * 16 15 14 18 18 O 1.21287 * 119.99977 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99751 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99613 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00144 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00016 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99888 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00401 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46997 * 90.00103 * 24 22 20 26 26 H 1.48497 * 109.47382 * 210.00644 * 24 22 20 27 27 H 1.48506 * 109.46651 * 330.00295 * 24 22 20 28 28 C 1.47956 * 90.80322 * 24.60174 * 15 14 13 29 29 H 1.08006 * 119.99422 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00405 * 179.97438 * 1 2 3 31 31 H 1.08007 * 119.99211 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47530 * 265.16655 * 4 3 2 33 33 H 1.09001 * 109.46854 * 25.16716 * 4 3 2 34 34 H 1.09000 * 109.46895 * 145.16463 * 4 3 2 35 35 H 1.07998 * 120.00118 * 354.08641 * 5 3 2 36 36 H 1.08995 * 109.46959 * 114.27958 * 6 5 3 37 37 H 1.08997 * 109.47262 * 354.27789 * 6 5 3 38 38 H 0.97001 * 120.00101 * 0.02562 * 9 7 6 39 39 H 1.08994 * 109.47306 * 299.99512 * 12 10 9 40 40 H 1.09004 * 109.47089 * 179.97438 * 12 10 9 41 41 H 1.09002 * 109.47334 * 60.00233 * 12 10 9 42 42 H 1.08997 * 112.94118 * 50.33439 * 13 10 9 43 43 H 1.08998 * 113.75705 * 336.23706 * 14 13 10 44 44 H 1.08997 * 113.75869 * 107.60449 * 14 13 10 45 45 H 1.09003 * 109.47282 * 210.56374 * 16 15 14 46 46 H 1.09006 * 109.47361 * 330.56582 * 16 15 14 47 47 H 0.96990 * 120.00262 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00344 * 179.97438 * 23 22 20 49 49 H 1.08996 * 113.76048 * 221.08432 * 28 15 14 50 50 H 1.08997 * 113.76310 * 89.71864 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3110 2.5791 -0.0006 5 6 3.3931 1.2739 0.0005 6 6 4.1467 2.5719 -0.1340 7 6 5.1167 2.4728 -1.2831 8 8 5.1887 1.4492 -1.9294 9 7 5.9036 3.5222 -1.5931 10 6 6.8462 3.4261 -2.7105 11 1 6.4107 2.8160 -3.5018 12 6 8.1467 2.7815 -2.2266 13 6 7.1414 4.8268 -3.2506 14 6 6.0633 5.3604 -4.2112 15 7 7.1890 5.8605 -5.0351 16 6 6.9494 5.6121 -6.4630 17 6 6.2372 6.7953 -7.0662 18 8 5.9572 7.7516 -6.3747 19 7 5.9123 6.7913 -8.3743 20 6 5.2639 7.8675 -8.9228 21 1 5.0139 8.7187 -8.3069 22 6 4.9294 7.8636 -10.2714 23 7 5.2342 6.8281 -11.0210 24 14 4.0466 9.3302 -11.0191 25 1 5.0465 10.3046 -11.5249 26 1 3.1895 8.8724 -12.1420 27 1 3.2020 9.9796 -9.9845 28 6 8.0903 4.8362 -4.4627 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8686 -0.9354 0.0004 32 1 1.2047 2.9369 -1.0247 33 1 0.3236 2.4288 0.4361 34 1 1.8596 3.3156 0.5865 35 1 3.9330 0.3435 0.0973 36 1 4.6939 2.7715 0.7872 37 1 3.4430 3.3829 -0.3215 38 1 5.8458 4.3411 -1.0764 39 1 8.5822 3.3917 -1.4354 40 1 8.8479 2.7096 -3.0581 41 1 7.9364 1.7836 -1.8419 42 1 7.4210 5.5333 -2.4691 43 1 5.4794 4.5772 -4.6946 44 1 5.4459 6.1502 -3.7834 45 1 7.9024 5.4640 -6.9710 46 1 6.3337 4.7200 -6.5784 47 1 6.1366 6.0267 -8.9273 48 1 5.0003 6.8252 -11.9624 49 1 9.0894 5.2080 -4.2355 50 1 8.1004 3.8994 -5.0198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276413606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:00 Heat of formation + Delta-G solvation = -9.510653 kcal Electronic energy + Delta-G solvation = -28015.554526 eV Core-core repulsion = 24044.521473 eV Total energy + Delta-G solvation = -3971.033052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.55714 -39.56720 -37.78554 -37.20518 -35.38342 -33.85420 -32.92451 -31.57450 -31.14689 -29.54629 -28.87510 -26.96121 -26.15246 -25.55211 -24.14376 -22.40970 -21.17449 -20.55775 -19.55671 -19.14669 -18.17698 -17.86670 -17.34406 -16.67496 -16.35932 -16.07023 -15.27204 -15.24841 -14.94570 -14.71864 -14.52955 -14.29140 -14.00450 -13.71608 -13.54209 -13.53941 -13.21941 -12.99179 -12.78265 -12.58244 -12.54977 -12.32756 -11.99159 -11.82924 -11.75743 -11.59627 -11.36460 -11.18205 -11.06257 -10.94304 -10.80632 -10.67014 -10.65016 -10.37648 -10.18887 -10.00477 -9.47263 -9.30551 -8.68751 -8.51190 -8.14131 -7.92939 -6.38689 -3.79421 1.03535 2.45307 2.66512 3.04925 3.19537 3.27673 3.33577 3.90708 3.96364 4.22615 4.32756 4.33158 4.52762 4.55535 4.60714 4.91041 4.95188 4.97549 4.99728 5.03453 5.10633 5.17802 5.22258 5.24824 5.30186 5.39576 5.40542 5.45498 5.52555 5.54339 5.66169 5.68163 5.70863 5.76828 5.78030 5.92092 6.02128 6.06127 6.15532 6.18538 6.30813 6.34848 6.37908 6.60274 6.63929 7.19359 7.29196 7.57754 8.03871 8.09224 8.65562 9.21494 9.58206 10.10713 10.79258 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.002093 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.440223 B =13377.290015 C =15197.393556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.117 4.117 3 C -0.107 4.107 4 C -0.126 4.126 5 C -0.122 4.122 6 C -0.118 4.118 7 C 0.518 3.482 8 O -0.537 6.537 9 N -0.725 5.725 10 C 0.150 3.850 11 H 0.088 0.912 12 C -0.161 4.161 13 C -0.125 4.125 14 C 0.018 3.982 15 N -0.449 5.449 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.010 3.990 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.401 0.599 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.091 0.909 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 -12.768 23.553 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.135 4.135 3 C -0.107 4.107 4 C -0.182 4.182 5 C -0.140 4.140 6 C -0.158 4.158 7 C 0.304 3.696 8 O -0.413 6.413 9 N -0.376 5.376 10 C 0.045 3.955 11 H 0.106 0.894 12 C -0.219 4.219 13 C -0.144 4.144 14 C -0.111 4.111 15 N -0.171 5.171 16 C -0.122 4.122 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.195 1.195 28 C -0.120 4.120 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.235 0.765 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.109 0.891 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.695 -12.184 23.325 26.325 hybrid contribution -0.494 -0.310 -0.880 1.056 sum -1.189 -12.494 22.444 25.715 Atomic orbital electron populations 1.24434 0.95726 1.02105 1.00149 1.21852 0.95318 0.96054 1.00238 1.20576 0.93925 0.94437 1.01746 1.20922 1.00286 0.94458 1.02523 1.22730 0.93857 0.97653 0.99780 1.20807 0.98275 0.98730 0.97946 1.20522 0.80605 0.83319 0.85165 1.90714 1.68492 1.29755 1.52382 1.46086 1.40265 1.16795 1.34490 1.21048 0.89396 0.96139 0.88932 0.89410 1.22132 0.96909 1.00981 1.01874 1.23317 0.97942 0.95569 0.97608 1.24011 0.94292 0.98681 0.94115 1.68407 1.06351 1.40256 1.02132 1.22481 1.01072 0.97508 0.91172 1.19695 0.85003 0.89011 0.83093 1.90511 1.58140 1.36371 1.60920 1.41883 1.51956 1.19121 1.07546 1.19687 1.32601 0.97429 0.92980 0.87993 1.25257 0.98207 0.98390 0.96218 1.69614 1.47708 1.29734 1.07422 0.85861 0.79155 0.80727 0.78558 1.20420 1.20954 1.19460 1.23951 0.98426 0.95401 0.94196 0.87986 0.88133 0.86822 0.91149 0.91401 0.91298 0.86429 0.87940 0.87821 0.76506 0.92360 0.91355 0.92252 0.87813 0.91450 0.89146 0.89425 0.92480 0.77561 0.91927 0.89094 0.91208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.34 14.11 28.88 0.41 -0.93 16 2 C -0.12 -0.96 9.83 -37.83 -0.37 -1.34 16 3 C -0.11 -0.91 5.98 -102.88 -0.62 -1.52 16 4 C -0.13 -0.86 8.54 36.00 0.31 -0.56 16 5 C -0.12 -1.06 8.45 -36.16 -0.31 -1.37 16 6 C -0.12 -0.83 5.77 -29.04 -0.17 -1.00 16 7 C 0.52 5.25 7.79 -10.99 -0.09 5.16 16 8 O -0.54 -7.74 15.70 5.56 0.09 -7.65 16 9 N -0.72 -6.07 5.08 -53.81 -0.27 -6.34 16 10 C 0.15 1.44 2.38 -67.93 -0.16 1.28 16 11 H 0.09 1.06 7.42 -51.93 -0.39 0.67 16 12 C -0.16 -1.37 9.31 37.16 0.35 -1.03 16 13 C -0.12 -1.29 3.46 -89.68 -0.31 -1.60 16 14 C 0.02 0.25 7.53 -2.63 -0.02 0.23 16 15 N -0.45 -7.37 5.65 -239.52 -1.35 -8.73 16 16 C 0.01 0.18 5.28 -4.97 -0.03 0.15 16 17 C 0.45 10.87 7.83 -10.98 -0.09 10.78 16 18 O -0.58 -16.11 16.01 5.55 0.09 -16.02 16 19 N -0.57 -14.75 5.29 -10.96 -0.06 -14.80 16 20 C -0.30 -8.45 9.68 -14.93 -0.14 -8.60 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -24.98 13.05 55.50 0.72 -24.25 16 24 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.01 0.12 6.65 -2.76 -0.02 0.10 16 29 H 0.10 0.66 6.06 -52.48 -0.32 0.34 16 30 H 0.10 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.11 0.87 8.06 -52.48 -0.42 0.44 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.41 6.19 -51.93 -0.32 0.09 16 34 H 0.07 0.38 6.70 -51.93 -0.35 0.03 16 35 H 0.12 1.09 8.05 -52.49 -0.42 0.66 16 36 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.10 0.61 5.79 -51.93 -0.30 0.31 16 38 H 0.40 2.32 8.60 -40.82 -0.35 1.97 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.54 7.52 -51.93 -0.39 0.15 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.97 7.33 -51.93 -0.38 0.59 16 44 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 46 H 0.06 0.95 7.39 -51.93 -0.38 0.56 16 47 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 48 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.07 0.75 7.88 -51.93 -0.41 0.34 16 LS Contribution 413.22 15.07 6.23 6.23 Total: -1.00 -35.15 413.22 -9.00 -44.15 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -8.07 Total: 10.84 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.35 Total: 0.23 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: -0.96 Total: -54.12 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: 0.18 Total: -23.67 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -35.15 -9.00 -44.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276413606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.641 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds