Wall clock time and date at job start Tue Mar 31 2020 18:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32871 * 1 3 3 C 1.47109 * 120.00369 * 2 1 4 4 C 1.50697 * 120.00088 * 359.97438 * 3 2 1 5 5 C 1.32874 * 119.99982 * 179.97438 * 3 2 1 6 6 C 1.50699 * 119.99913 * 174.08272 * 5 3 2 7 7 C 1.50700 * 109.47060 * 234.27771 * 6 5 3 8 8 O 1.21278 * 120.00317 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99901 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00194 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.46852 * 35.00257 * 10 9 7 12 12 C 1.52999 * 109.46932 * 275.00277 * 10 9 7 13 13 C 1.52994 * 109.47188 * 155.00015 * 10 9 7 14 14 C 1.53939 * 113.73586 * 278.76645 * 13 10 9 15 15 N 1.48189 * 86.09895 * 221.95906 * 14 13 10 16 16 C 1.46900 * 111.06874 * 137.52120 * 15 14 13 17 17 C 1.50703 * 109.47084 * 90.56362 * 16 15 14 18 18 O 1.21287 * 119.99977 * 0.02562 * 17 16 15 19 19 N 1.34783 * 119.99751 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99613 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00144 * 0.02562 * 20 19 17 22 22 C 1.38945 * 120.00016 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99888 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00401 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46997 * 90.00103 * 24 22 20 26 26 H 1.48497 * 109.47382 * 210.00644 * 24 22 20 27 27 H 1.48506 * 109.46651 * 330.00295 * 24 22 20 28 28 C 1.47956 * 90.80322 * 24.60174 * 15 14 13 29 29 H 1.08006 * 119.99422 * 0.02562 * 1 2 3 30 30 H 1.07994 * 120.00405 * 179.97438 * 1 2 3 31 31 H 1.08007 * 119.99211 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47530 * 265.16655 * 4 3 2 33 33 H 1.09001 * 109.46854 * 25.16716 * 4 3 2 34 34 H 1.09000 * 109.46895 * 145.16463 * 4 3 2 35 35 H 1.07998 * 120.00118 * 354.08641 * 5 3 2 36 36 H 1.08995 * 109.46959 * 114.27958 * 6 5 3 37 37 H 1.08997 * 109.47262 * 354.27789 * 6 5 3 38 38 H 0.97001 * 120.00101 * 0.02562 * 9 7 6 39 39 H 1.08994 * 109.47306 * 299.99512 * 12 10 9 40 40 H 1.09004 * 109.47089 * 179.97438 * 12 10 9 41 41 H 1.09002 * 109.47334 * 60.00233 * 12 10 9 42 42 H 1.08997 * 112.94118 * 50.33439 * 13 10 9 43 43 H 1.08998 * 113.75705 * 336.23706 * 14 13 10 44 44 H 1.08997 * 113.75869 * 107.60449 * 14 13 10 45 45 H 1.09003 * 109.47282 * 210.56374 * 16 15 14 46 46 H 1.09006 * 109.47361 * 330.56582 * 16 15 14 47 47 H 0.96990 * 120.00262 * 0.02562 * 19 17 16 48 48 H 0.97002 * 120.00344 * 179.97438 * 23 22 20 49 49 H 1.08996 * 113.76048 * 221.08432 * 28 15 14 50 50 H 1.08997 * 113.76310 * 89.71864 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3110 2.5791 -0.0006 5 6 3.3931 1.2739 0.0005 6 6 4.1467 2.5719 -0.1340 7 6 5.1167 2.4728 -1.2831 8 8 5.1887 1.4492 -1.9294 9 7 5.9036 3.5222 -1.5931 10 6 6.8462 3.4261 -2.7105 11 1 6.4107 2.8160 -3.5018 12 6 8.1467 2.7815 -2.2266 13 6 7.1414 4.8268 -3.2506 14 6 6.0633 5.3604 -4.2112 15 7 7.1890 5.8605 -5.0351 16 6 6.9494 5.6121 -6.4630 17 6 6.2372 6.7953 -7.0662 18 8 5.9572 7.7516 -6.3747 19 7 5.9123 6.7913 -8.3743 20 6 5.2639 7.8675 -8.9228 21 1 5.0139 8.7187 -8.3069 22 6 4.9294 7.8636 -10.2714 23 7 5.2342 6.8281 -11.0210 24 14 4.0466 9.3302 -11.0191 25 1 5.0465 10.3046 -11.5249 26 1 3.1895 8.8724 -12.1420 27 1 3.2020 9.9796 -9.9845 28 6 8.0903 4.8362 -4.4627 29 1 -0.5399 0.9354 -0.0004 30 1 -0.5400 -0.9352 -0.0004 31 1 1.8686 -0.9354 0.0004 32 1 1.2047 2.9369 -1.0247 33 1 0.3236 2.4288 0.4361 34 1 1.8596 3.3156 0.5865 35 1 3.9330 0.3435 0.0973 36 1 4.6939 2.7715 0.7872 37 1 3.4430 3.3829 -0.3215 38 1 5.8458 4.3411 -1.0764 39 1 8.5822 3.3917 -1.4354 40 1 8.8479 2.7096 -3.0581 41 1 7.9364 1.7836 -1.8419 42 1 7.4210 5.5333 -2.4691 43 1 5.4794 4.5772 -4.6946 44 1 5.4459 6.1502 -3.7834 45 1 7.9024 5.4640 -6.9710 46 1 6.3337 4.7200 -6.5784 47 1 6.1366 6.0267 -8.9273 48 1 5.0003 6.8252 -11.9624 49 1 9.0894 5.2080 -4.2355 50 1 8.1004 3.8994 -5.0198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276413606.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:59 Heat of formation + Delta-G solvation = -35.453421 kcal Electronic energy + Delta-G solvation = -28016.679489 eV Core-core repulsion = 24044.521473 eV Total energy + Delta-G solvation = -3972.158015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.55563 -40.58192 -39.57880 -37.85088 -36.33198 -35.88896 -33.59885 -33.30648 -32.39582 -30.69127 -29.49320 -27.69547 -27.39301 -26.86108 -25.58467 -23.39361 -21.98218 -21.32870 -20.98925 -20.42243 -19.89348 -18.79030 -18.14973 -17.80260 -17.51944 -17.03427 -16.59415 -16.52226 -16.31835 -15.85161 -15.76661 -15.44594 -15.13322 -14.85324 -14.73925 -14.27698 -14.15780 -14.02548 -13.80123 -13.68405 -13.52622 -13.37043 -13.22545 -12.98916 -12.73654 -12.67009 -12.49024 -12.43679 -12.31800 -12.14118 -11.82759 -11.82057 -11.72774 -11.64436 -11.50742 -11.40320 -10.85496 -10.38761 -10.11215 -10.02404 -9.61140 -9.11832 -8.47626 -5.96715 0.42469 1.36927 1.40035 1.53225 1.68768 2.02053 2.04427 2.27547 2.36496 2.77569 3.18274 3.31546 3.46613 3.64966 3.74402 3.89647 4.00568 4.14737 4.17630 4.23154 4.31833 4.34872 4.41821 4.44163 4.45755 4.49049 4.51497 4.53250 4.60761 4.76725 4.78377 4.83018 4.84516 4.87161 4.99027 5.01796 5.12874 5.21519 5.33208 5.39059 5.43044 5.47416 5.57252 5.59549 5.78411 5.89344 6.04046 6.08025 6.59397 6.61509 7.11739 7.31964 7.55204 8.11443 8.69915 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010852 B = 0.002093 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.440223 B =13377.290015 C =15197.393556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.142 4.142 3 C -0.113 4.113 4 C -0.126 4.126 5 C -0.138 4.138 6 C -0.109 4.109 7 C 0.514 3.486 8 O -0.586 6.586 9 N -0.714 5.714 10 C 0.155 3.845 11 H 0.062 0.938 12 C -0.154 4.154 13 C -0.096 4.096 14 C 0.010 3.990 15 N -0.482 5.482 16 C 0.023 3.977 17 C 0.442 3.558 18 O -0.617 6.617 19 N -0.577 5.577 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.270 1.270 27 H -0.273 1.273 28 C 0.015 3.985 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.120 0.880 38 H 0.416 0.584 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.043 0.957 42 H 0.122 0.878 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.073 0.927 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.109 0.891 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.376 -12.501 24.581 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.160 4.160 3 C -0.113 4.113 4 C -0.182 4.182 5 C -0.156 4.156 6 C -0.148 4.148 7 C 0.302 3.698 8 O -0.466 6.466 9 N -0.366 5.366 10 C 0.050 3.950 11 H 0.080 0.920 12 C -0.212 4.212 13 C -0.115 4.115 14 C -0.119 4.119 15 N -0.204 5.204 16 C -0.109 4.109 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.215 5.215 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.195 1.195 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.114 4.114 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.150 0.850 37 H 0.137 0.863 38 H 0.253 0.747 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.140 0.860 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.126 0.874 46 H 0.091 0.909 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.127 0.873 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.355 -11.916 24.369 27.129 hybrid contribution -0.618 -0.429 -1.172 1.393 sum -0.973 -12.345 23.197 26.295 Atomic orbital electron populations 1.24646 0.95393 1.03110 0.98293 1.22007 0.95994 0.96220 1.01822 1.20822 0.94117 0.95229 1.01174 1.20971 1.00836 0.93954 1.02480 1.22784 0.94148 0.98013 1.00692 1.20820 0.97896 0.98296 0.97823 1.21071 0.80683 0.82721 0.85332 1.90696 1.70027 1.31695 1.54218 1.46000 1.39501 1.17132 1.33987 1.20886 0.90137 0.95217 0.88796 0.91976 1.22070 0.96216 1.00258 1.02673 1.23126 0.95332 0.95936 0.97145 1.24022 0.94652 0.98104 0.95101 1.68375 1.08281 1.42843 1.00950 1.22350 1.01311 0.94702 0.92518 1.20808 0.83850 0.90146 0.82277 1.90471 1.59582 1.38551 1.61709 1.41976 1.52308 1.18797 1.08418 1.19655 1.34837 0.98021 0.93731 0.90395 1.26073 0.98313 1.01107 0.96001 1.69678 1.47779 1.30953 1.07877 0.84912 0.78143 0.77455 0.77730 1.19537 1.19485 1.19746 1.24074 0.98638 0.94701 0.93950 0.87212 0.86921 0.87053 0.91804 0.90589 0.89601 0.87869 0.84980 0.86257 0.74682 0.90562 0.90514 0.93746 0.85972 0.92148 0.90777 0.87416 0.90920 0.77124 0.91310 0.87321 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 14.11 66.64 0.94 -1.44 16 2 C -0.14 -2.35 9.83 23.42 0.23 -2.12 16 3 C -0.11 -1.88 5.98 -18.71 -0.11 -2.00 16 4 C -0.13 -1.57 8.54 71.23 0.61 -0.96 16 5 C -0.14 -2.38 8.45 24.51 0.21 -2.17 16 6 C -0.11 -1.38 5.77 29.10 0.17 -1.21 16 7 C 0.51 10.05 7.79 87.66 0.68 10.73 16 8 O -0.59 -17.23 15.70 -3.02 -0.05 -17.28 16 9 N -0.71 -10.80 5.08 -442.53 -2.25 -13.04 16 10 C 0.15 2.75 2.38 44.99 0.11 2.86 16 11 H 0.06 1.48 7.42 -2.38 -0.02 1.46 16 12 C -0.15 -2.30 9.31 71.98 0.67 -1.63 16 13 C -0.10 -1.78 3.46 -10.15 -0.04 -1.81 16 14 C 0.01 0.28 7.53 86.37 0.65 0.93 16 15 N -0.48 -15.29 5.65 -911.70 -5.15 -20.43 16 16 C 0.02 0.82 5.28 85.56 0.45 1.27 16 17 C 0.44 21.86 7.83 87.66 0.69 22.54 16 18 O -0.62 -35.45 16.01 -3.05 -0.05 -35.50 16 19 N -0.58 -30.62 5.29 -306.98 -1.62 -32.24 16 20 C -0.33 -19.38 9.68 84.04 0.81 -18.57 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.02 -0.85 5.50 84.92 0.47 -0.38 16 23 N -0.92 -50.76 13.05 21.66 0.28 -50.47 16 24 Si 0.99 43.67 29.55 68.60 2.03 45.69 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 28 C 0.01 0.31 6.65 86.41 0.57 0.89 16 29 H 0.11 1.27 6.06 -2.91 -0.02 1.25 16 30 H 0.11 1.19 8.06 -2.91 -0.02 1.17 16 31 H 0.11 1.79 8.06 -2.91 -0.02 1.77 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.80 6.19 -2.39 -0.01 0.79 16 34 H 0.09 0.75 6.70 -2.39 -0.02 0.74 16 35 H 0.10 2.02 8.05 -2.91 -0.02 2.00 16 36 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.12 1.14 5.79 -2.39 -0.01 1.13 16 38 H 0.42 3.75 8.60 -92.71 -0.80 2.95 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.08 1.02 7.52 -2.39 -0.02 1.00 16 41 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.06 1.75 7.33 -2.39 -0.02 1.73 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.11 3.38 8.08 -2.39 -0.02 3.36 16 46 H 0.07 2.36 7.39 -2.38 -0.02 2.34 16 47 H 0.40 19.92 7.90 -92.72 -0.73 19.19 16 48 H 0.28 14.27 8.31 -92.71 -0.77 13.50 16 49 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.08 1.54 7.88 -2.39 -0.02 1.52 16 Total: -1.00 -78.56 413.22 -0.27 -78.83 By element: Atomic # 1 Polarization: 38.11 SS G_CDS: -0.58 Total: 37.53 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 7.11 Total: 6.92 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -8.74 Total: -116.19 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -0.10 Total: -52.78 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -78.56 -0.27 -78.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276413606.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.377 kcal (2) G-P(sol) polarization free energy of solvation -78.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds