Wall clock time and date at job start Tue Mar 31 2020 19:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47403 * 2 1 4 4 C 1.53007 * 109.47114 * 120.00615 * 2 1 3 5 5 C 1.50703 * 109.46741 * 294.99648 * 4 2 1 6 6 O 1.21279 * 120.00238 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99884 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00076 * 184.44159 * 7 5 4 9 9 C 1.52999 * 109.49604 * 297.71961 * 8 7 5 10 10 O 1.42898 * 109.47683 * 302.45375 * 9 8 7 11 11 C 1.53041 * 109.52481 * 57.80278 * 8 7 5 12 12 C 1.53043 * 109.53739 * 58.60074 * 11 8 7 13 13 C 1.53190 * 109.30907 * 61.36557 * 12 11 8 14 14 N 1.46919 * 108.77707 * 305.36502 * 13 12 11 15 15 C 1.36937 * 120.62802 * 233.58562 * 14 13 12 16 16 H 1.08003 * 119.99969 * 153.26078 * 15 14 13 17 17 C 1.38814 * 120.00395 * 333.26204 * 15 14 13 18 18 N 1.31624 * 119.99518 * 331.21447 * 17 15 14 19 19 Si 1.86799 * 120.00221 * 151.21323 * 17 15 14 20 20 H 1.48497 * 109.47150 * 94.95514 * 19 17 15 21 21 H 1.48502 * 109.47175 * 214.95168 * 19 17 15 22 22 H 1.48496 * 109.47425 * 334.94986 * 19 17 15 23 23 C 1.46922 * 118.74097 * 53.60855 * 14 13 12 24 24 N 1.46497 * 109.46887 * 240.00020 * 2 1 3 25 25 C 1.36339 * 125.63989 * 299.69722 * 24 2 1 26 26 C 1.34847 * 108.22303 * 179.83314 * 25 24 2 27 27 C 1.40895 * 107.41726 * 0.41951 * 26 25 24 28 28 C 1.34862 * 107.41130 * 359.73832 * 27 26 25 29 29 H 1.09006 * 109.46989 * 299.99571 * 1 2 3 30 30 H 1.08993 * 109.46991 * 59.99497 * 1 2 3 31 31 H 1.08999 * 109.46925 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46893 * 175.00016 * 4 2 1 33 33 H 1.08999 * 109.47426 * 54.99488 * 4 2 1 34 34 H 0.97004 * 120.00012 * 4.44752 * 7 5 4 35 35 H 1.09004 * 109.47208 * 182.45482 * 9 8 7 36 36 H 1.09004 * 109.47129 * 62.45410 * 9 8 7 37 37 H 0.96698 * 114.00245 * 180.02562 * 10 9 8 38 38 H 1.08994 * 109.46057 * 178.62209 * 11 8 7 39 39 H 1.09006 * 109.45888 * 298.58201 * 11 8 7 40 40 H 1.08998 * 109.49653 * 301.41629 * 12 11 8 41 41 H 1.09001 * 109.52036 * 181.33360 * 12 11 8 42 42 H 1.09000 * 109.57990 * 185.57382 * 13 12 11 43 43 H 1.09000 * 109.70142 * 65.22772 * 13 12 11 44 44 H 0.97002 * 119.99832 * 179.97438 * 18 17 15 45 45 H 1.08998 * 109.58579 * 186.59921 * 23 14 13 46 46 H 1.09005 * 109.58492 * 66.18228 * 23 14 13 47 47 H 1.08005 * 125.89177 * 359.95381 * 25 24 2 48 48 H 1.07999 * 126.29682 * 180.16070 * 26 25 24 49 49 H 1.07995 * 126.29562 * 179.74222 * 27 26 25 50 50 H 1.07997 * 125.88369 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 8 1.0110 1.0868 2.3634 7 7 1.9854 -0.3916 3.7001 8 6 1.5156 0.3111 4.8967 9 6 2.0727 1.7361 4.9037 10 8 3.5000 1.6900 4.8514 11 6 -0.0140 0.3606 4.8934 12 6 -0.5720 -1.0639 4.8532 13 6 -0.1154 -1.8223 6.1035 14 7 1.3493 -1.7503 6.1917 15 6 2.0978 -2.8905 6.3133 16 1 3.1170 -2.9081 5.9565 17 6 1.5466 -4.0239 6.8951 18 7 0.6009 -3.9040 7.8028 19 14 2.1468 -5.7192 6.3901 20 1 3.1963 -6.1750 7.3366 21 1 1.0100 -6.6743 6.4140 22 1 2.7113 -5.6560 5.0180 23 6 1.9958 -0.4317 6.1474 24 7 2.0183 -0.6906 -1.1962 25 6 1.7655 -1.9901 -1.5220 26 6 2.3798 -2.2586 -2.6920 27 6 3.0440 -1.0845 -3.0988 28 6 2.8054 -0.1416 -2.1646 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1264 -0.7996 1.2055 33 1 1.6054 -1.7199 1.2951 34 1 2.5441 -1.1797 3.7884 35 1 1.7588 2.2444 5.8154 36 1 1.6947 2.2782 4.0368 37 1 3.9219 2.5600 4.8531 38 1 -0.3630 0.8620 5.7960 39 1 -0.3576 0.9101 4.0169 40 1 -0.2033 -1.5741 3.9634 41 1 -1.6611 -1.0278 4.8270 42 1 -0.4266 -2.8645 6.0325 43 1 -0.5577 -1.3686 6.9904 44 1 0.2154 -4.6959 8.2091 45 1 3.0778 -0.5565 6.1055 46 1 1.7258 0.1377 7.0368 47 1 1.1736 -2.6843 -0.9439 48 1 2.3686 -3.2016 -3.2183 49 1 3.6355 -0.9621 -3.9941 50 1 3.1746 0.8732 -2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279517780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:31 Heat of formation + Delta-G solvation = -12.512712 kcal Electronic energy + Delta-G solvation = -30850.827128 eV Core-core repulsion = 26879.663896 eV Total energy + Delta-G solvation = -3971.163231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.29904 -40.18429 -37.83876 -36.10915 -35.00526 -33.90453 -32.40325 -30.60369 -30.43995 -29.51214 -28.74014 -27.69318 -25.51820 -25.14472 -23.08534 -22.26183 -21.20835 -20.55138 -20.20173 -19.36396 -18.81300 -17.58937 -17.05150 -16.78039 -16.49762 -15.55203 -15.37669 -14.88870 -14.72544 -14.45850 -14.25895 -13.99685 -13.68942 -13.64788 -13.31624 -13.06882 -12.86957 -12.86613 -12.57829 -12.44461 -12.28605 -12.09276 -12.02818 -11.83708 -11.65994 -11.38581 -11.24772 -11.19941 -11.16461 -10.75827 -10.46994 -10.29029 -10.17527 -9.86822 -9.81722 -9.62270 -9.16193 -8.63195 -8.56227 -8.48347 -8.16286 -6.83378 -5.92359 -3.26158 2.27943 2.78516 2.87075 3.05717 3.31583 3.41210 3.43018 3.59049 4.41349 4.42776 4.44442 4.68823 4.85989 4.99979 5.10692 5.19709 5.22403 5.27916 5.36926 5.42996 5.47149 5.50792 5.54895 5.60208 5.61797 5.69633 5.75142 5.83693 5.85937 5.94257 6.12301 6.19701 6.27308 6.30518 6.33175 6.38686 6.54637 6.57591 6.73335 6.77450 6.99337 6.99896 7.20722 7.25088 7.38862 7.44359 7.73339 7.79741 7.93841 8.30430 8.51165 9.07804 9.74036 10.31408 11.15785 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.003849 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.810019 B = 7272.554813 C = 8766.710205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.152 3.848 3 H 0.104 0.896 4 C -0.154 4.154 5 C 0.523 3.477 6 O -0.554 6.554 7 N -0.684 5.684 8 C 0.167 3.833 9 C 0.066 3.934 10 O -0.566 6.566 11 C -0.119 4.119 12 C -0.134 4.134 13 C 0.170 3.830 14 N -0.586 5.586 15 C -0.267 4.267 16 H 0.066 0.934 17 C 0.013 3.987 18 N -0.885 5.885 19 Si 0.889 3.111 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.278 1.278 23 C 0.148 3.852 24 N -0.441 5.441 25 C -0.011 4.011 26 C -0.207 4.207 27 C -0.206 4.206 28 C -0.017 4.017 29 H 0.097 0.903 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.408 0.592 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.370 0.630 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.019 0.981 44 H 0.254 0.746 45 H 0.067 0.933 46 H 0.031 0.969 47 H 0.157 0.843 48 H 0.131 0.869 49 H 0.131 0.869 50 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 9.694 -14.118 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.050 3.950 3 H 0.122 0.878 4 C -0.195 4.195 5 C 0.308 3.692 6 O -0.435 6.435 7 N -0.333 5.333 8 C 0.079 3.921 9 C -0.013 4.013 10 O -0.370 6.370 11 C -0.158 4.158 12 C -0.173 4.173 13 C 0.044 3.956 14 N -0.309 5.309 15 C -0.396 4.396 16 H 0.084 0.916 17 C -0.188 4.188 18 N -0.527 5.527 19 Si 0.717 3.283 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.203 1.203 23 C 0.021 3.979 24 N -0.117 5.117 25 C -0.141 4.141 26 C -0.231 4.231 27 C -0.231 4.231 28 C -0.147 4.147 29 H 0.116 0.884 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.243 0.757 35 H 0.063 0.937 36 H 0.082 0.918 37 H 0.216 0.784 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.037 0.963 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.048 0.952 47 H 0.175 0.825 48 H 0.149 0.851 49 H 0.149 0.851 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.637 9.785 -13.739 16.880 hybrid contribution 0.617 -0.812 -0.042 1.021 sum 1.255 8.973 -13.781 16.492 Atomic orbital electron populations 1.22275 0.92828 1.02860 1.04252 1.21080 0.95979 0.96406 0.81535 0.87824 1.22014 1.03682 1.01084 0.92717 1.20057 0.79329 0.85281 0.84501 1.90564 1.41641 1.24571 1.86708 1.45784 1.51787 1.31323 1.04367 1.20980 0.93973 0.90033 0.87116 1.22663 0.80784 0.97533 1.00319 1.86508 1.19409 1.33391 1.97651 1.21736 0.93399 0.98560 1.02091 1.22057 0.98474 0.95354 1.01463 1.20719 0.83501 0.99431 0.91905 1.44089 1.01767 1.00383 1.84625 1.19044 0.97697 0.88540 1.34299 0.91589 1.24899 0.99229 0.98842 0.95808 1.70208 1.30164 1.28513 1.23827 0.86519 0.77909 0.84958 0.78871 1.21441 1.21545 1.20325 1.21074 0.97366 0.87689 0.91782 1.44409 1.39036 1.10113 1.18122 1.21772 1.06640 0.86210 0.99491 1.20865 1.04979 0.99289 0.97983 1.20854 1.06983 0.94056 1.01213 1.21825 1.01372 0.99733 0.91732 0.88419 0.92311 0.92382 0.88487 0.88216 0.75698 0.93657 0.91835 0.78446 0.91983 0.90994 0.92744 0.93192 0.90721 0.96276 0.93608 0.91437 0.95161 0.82525 0.85070 0.85106 0.82556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 8.98 37.16 0.33 -1.51 16 2 C 0.15 1.70 2.67 -67.93 -0.18 1.52 16 3 H 0.10 1.17 7.88 -51.93 -0.41 0.76 16 4 C -0.15 -1.81 5.16 -27.88 -0.14 -1.95 16 5 C 0.52 7.42 6.90 -10.98 -0.08 7.35 16 6 O -0.55 -8.59 10.24 5.56 0.06 -8.53 16 7 N -0.68 -10.66 4.01 -47.50 -0.19 -10.85 16 8 C 0.17 2.76 0.45 -131.70 -0.06 2.70 16 9 C 0.07 0.96 5.73 37.16 0.21 1.17 16 10 O -0.57 -7.90 13.02 -35.23 -0.46 -8.36 16 11 C -0.12 -1.98 4.44 -26.69 -0.12 -2.10 16 12 C -0.13 -2.44 5.93 -26.61 -0.16 -2.60 16 13 C 0.17 3.80 5.42 -3.72 -0.02 3.78 16 14 N -0.59 -13.49 2.91 -172.33 -0.50 -13.99 16 15 C -0.27 -6.84 9.50 -15.06 -0.14 -6.98 16 16 H 0.07 1.67 7.97 -52.48 -0.42 1.25 16 17 C 0.01 0.34 4.58 -17.43 -0.08 0.26 16 18 N -0.89 -24.80 11.93 55.49 0.66 -24.14 16 19 Si 0.89 20.68 29.64 -169.99 -5.04 15.64 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 C 0.15 2.92 5.03 -3.72 -0.02 2.90 16 24 N -0.44 -5.08 2.62 -110.02 -0.29 -5.36 16 25 C -0.01 -0.13 10.45 -16.75 -0.18 -0.30 16 26 C -0.21 -2.42 10.86 -39.78 -0.43 -2.85 16 27 C -0.21 -2.35 10.86 -39.77 -0.43 -2.78 16 28 C -0.02 -0.19 11.39 -16.75 -0.19 -0.38 16 29 H 0.10 1.24 5.95 -51.93 -0.31 0.94 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.63 7.92 -51.93 -0.41 0.22 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.10 1.15 8.05 -51.93 -0.42 0.73 16 34 H 0.41 6.66 8.48 -40.82 -0.35 6.32 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.95 6.26 -51.93 -0.33 0.63 16 37 H 0.37 3.45 9.12 45.56 0.42 3.87 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.19 6.21 -51.93 -0.32 0.87 16 40 H 0.05 1.01 7.48 -51.93 -0.39 0.62 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.87 6.35 -51.93 -0.33 1.54 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.07 1.38 7.71 -51.93 -0.40 0.98 16 46 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.16 1.60 8.06 -52.48 -0.42 1.18 16 48 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 49 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 50 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -29.75 390.94 -9.00 -38.75 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -7.45 Total: 12.74 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -1.68 Total: -1.79 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.32 Total: -54.35 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.40 Total: -16.90 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.04 Total: 15.64 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.75 -9.00 -38.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279517780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.234 kcal (2) G-P(sol) polarization free energy of solvation -29.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds