Wall clock time and date at job start Tue Mar 31 2020 19:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47403 * 2 1 4 4 C 1.53007 * 109.47114 * 120.00615 * 2 1 3 5 5 C 1.50703 * 109.46741 * 294.99648 * 4 2 1 6 6 O 1.21279 * 120.00238 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99884 * 180.02562 * 5 4 2 8 8 C 1.46500 * 120.00076 * 184.44159 * 7 5 4 9 9 C 1.52999 * 109.49604 * 297.71961 * 8 7 5 10 10 O 1.42898 * 109.47683 * 302.45375 * 9 8 7 11 11 C 1.53041 * 109.52481 * 57.80278 * 8 7 5 12 12 C 1.53043 * 109.53739 * 58.60074 * 11 8 7 13 13 C 1.53190 * 109.30907 * 61.36557 * 12 11 8 14 14 N 1.46919 * 108.77707 * 305.36502 * 13 12 11 15 15 C 1.36937 * 120.62802 * 233.58562 * 14 13 12 16 16 H 1.08003 * 119.99969 * 153.26078 * 15 14 13 17 17 C 1.38814 * 120.00395 * 333.26204 * 15 14 13 18 18 N 1.31624 * 119.99518 * 331.21447 * 17 15 14 19 19 Si 1.86799 * 120.00221 * 151.21323 * 17 15 14 20 20 H 1.48497 * 109.47150 * 94.95514 * 19 17 15 21 21 H 1.48502 * 109.47175 * 214.95168 * 19 17 15 22 22 H 1.48496 * 109.47425 * 334.94986 * 19 17 15 23 23 C 1.46922 * 118.74097 * 53.60855 * 14 13 12 24 24 N 1.46497 * 109.46887 * 240.00020 * 2 1 3 25 25 C 1.36339 * 125.63989 * 299.69722 * 24 2 1 26 26 C 1.34847 * 108.22303 * 179.83314 * 25 24 2 27 27 C 1.40895 * 107.41726 * 0.41951 * 26 25 24 28 28 C 1.34862 * 107.41130 * 359.73832 * 27 26 25 29 29 H 1.09006 * 109.46989 * 299.99571 * 1 2 3 30 30 H 1.08993 * 109.46991 * 59.99497 * 1 2 3 31 31 H 1.08999 * 109.46925 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46893 * 175.00016 * 4 2 1 33 33 H 1.08999 * 109.47426 * 54.99488 * 4 2 1 34 34 H 0.97004 * 120.00012 * 4.44752 * 7 5 4 35 35 H 1.09004 * 109.47208 * 182.45482 * 9 8 7 36 36 H 1.09004 * 109.47129 * 62.45410 * 9 8 7 37 37 H 0.96698 * 114.00245 * 180.02562 * 10 9 8 38 38 H 1.08994 * 109.46057 * 178.62209 * 11 8 7 39 39 H 1.09006 * 109.45888 * 298.58201 * 11 8 7 40 40 H 1.08998 * 109.49653 * 301.41629 * 12 11 8 41 41 H 1.09001 * 109.52036 * 181.33360 * 12 11 8 42 42 H 1.09000 * 109.57990 * 185.57382 * 13 12 11 43 43 H 1.09000 * 109.70142 * 65.22772 * 13 12 11 44 44 H 0.97002 * 119.99832 * 179.97438 * 18 17 15 45 45 H 1.08998 * 109.58579 * 186.59921 * 23 14 13 46 46 H 1.09005 * 109.58492 * 66.18228 * 23 14 13 47 47 H 1.08005 * 125.89177 * 359.95381 * 25 24 2 48 48 H 1.07999 * 126.29682 * 180.16070 * 26 25 24 49 49 H 1.07995 * 126.29562 * 179.74222 * 27 26 25 50 50 H 1.07997 * 125.88369 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6414 0.0569 2.4766 6 8 1.0110 1.0868 2.3634 7 7 1.9854 -0.3916 3.7001 8 6 1.5156 0.3111 4.8967 9 6 2.0727 1.7361 4.9037 10 8 3.5000 1.6900 4.8514 11 6 -0.0140 0.3606 4.8934 12 6 -0.5720 -1.0639 4.8532 13 6 -0.1154 -1.8223 6.1035 14 7 1.3493 -1.7503 6.1917 15 6 2.0978 -2.8905 6.3133 16 1 3.1170 -2.9081 5.9565 17 6 1.5466 -4.0239 6.8951 18 7 0.6009 -3.9040 7.8028 19 14 2.1468 -5.7192 6.3901 20 1 3.1963 -6.1750 7.3366 21 1 1.0100 -6.6743 6.4140 22 1 2.7113 -5.6560 5.0180 23 6 1.9958 -0.4317 6.1474 24 7 2.0183 -0.6906 -1.1962 25 6 1.7655 -1.9901 -1.5220 26 6 2.3798 -2.2586 -2.6920 27 6 3.0440 -1.0845 -3.0988 28 6 2.8054 -0.1416 -2.1646 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1264 -0.7996 1.2055 33 1 1.6054 -1.7199 1.2951 34 1 2.5441 -1.1797 3.7884 35 1 1.7588 2.2444 5.8154 36 1 1.6947 2.2782 4.0368 37 1 3.9219 2.5600 4.8531 38 1 -0.3630 0.8620 5.7960 39 1 -0.3576 0.9101 4.0169 40 1 -0.2033 -1.5741 3.9634 41 1 -1.6611 -1.0278 4.8270 42 1 -0.4266 -2.8645 6.0325 43 1 -0.5577 -1.3686 6.9904 44 1 0.2154 -4.6959 8.2091 45 1 3.0778 -0.5565 6.1055 46 1 1.7258 0.1377 7.0368 47 1 1.1736 -2.6843 -0.9439 48 1 2.3686 -3.2016 -3.2183 49 1 3.6355 -0.9621 -3.9941 50 1 3.1746 0.8732 -2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279517780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:30 Heat of formation + Delta-G solvation = -30.768418 kcal Electronic energy + Delta-G solvation = -30851.618754 eV Core-core repulsion = 26879.663896 eV Total energy + Delta-G solvation = -3971.954858 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.18191 -41.40023 -39.16244 -37.39372 -36.01546 -35.36323 -33.94467 -32.36907 -31.76759 -30.49401 -29.57873 -28.68402 -27.29508 -26.60334 -24.12393 -23.85105 -22.57126 -21.69668 -21.24506 -20.26239 -20.12984 -18.67215 -18.54042 -18.13081 -17.62878 -16.84708 -16.61549 -16.52776 -15.88391 -15.72032 -15.50640 -15.22969 -15.02510 -14.72593 -14.59397 -14.38412 -14.23834 -14.06682 -13.92345 -13.54993 -13.45214 -13.18539 -13.11077 -13.01639 -12.92024 -12.79191 -12.74173 -12.47143 -12.32254 -12.21073 -12.09307 -11.96751 -11.79078 -11.50057 -11.20895 -11.03068 -10.53433 -10.33571 -9.80374 -9.49317 -9.01395 -8.74793 -7.91811 -5.27294 1.41873 1.45630 1.50623 1.58821 1.70916 1.90413 2.20087 2.47363 2.52098 3.21417 3.31622 3.52389 3.62968 3.73427 3.83653 4.05221 4.08144 4.16841 4.25456 4.26620 4.35428 4.43091 4.47835 4.53334 4.54884 4.62385 4.70215 4.73883 4.78179 4.86879 4.87854 4.91056 4.97338 4.98492 5.06891 5.17549 5.22694 5.27312 5.44498 5.45895 5.49005 5.61373 5.70489 5.74338 6.15196 6.34174 6.39974 6.54801 6.72165 6.94200 7.11642 7.33713 7.83305 8.37169 9.14649 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010632 B = 0.003849 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.810019 B = 7272.554813 C = 8766.710205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 H 0.105 0.895 4 C -0.145 4.145 5 C 0.525 3.475 6 O -0.564 6.564 7 N -0.689 5.689 8 C 0.172 3.828 9 C 0.076 3.924 10 O -0.579 6.579 11 C -0.112 4.112 12 C -0.120 4.120 13 C 0.178 3.822 14 N -0.597 5.597 15 C -0.265 4.265 16 H 0.069 0.931 17 C -0.038 4.038 18 N -0.923 5.923 19 Si 0.950 3.050 20 H -0.290 1.290 21 H -0.296 1.296 22 H -0.266 1.266 23 C 0.152 3.848 24 N -0.444 5.444 25 C -0.024 4.024 26 C -0.221 4.221 27 C -0.220 4.220 28 C -0.024 4.024 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.404 0.596 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.391 0.609 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.042 0.958 43 H -0.002 1.002 44 H 0.249 0.751 45 H 0.059 0.941 46 H 0.023 0.977 47 H 0.167 0.833 48 H 0.141 0.859 49 H 0.145 0.855 50 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 10.626 -15.865 19.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.057 3.943 3 H 0.123 0.877 4 C -0.186 4.186 5 C 0.312 3.688 6 O -0.445 6.445 7 N -0.338 5.338 8 C 0.084 3.916 9 C -0.004 4.004 10 O -0.387 6.387 11 C -0.151 4.151 12 C -0.159 4.159 13 C 0.053 3.947 14 N -0.320 5.320 15 C -0.395 4.395 16 H 0.086 0.914 17 C -0.235 4.235 18 N -0.567 5.567 19 Si 0.778 3.222 20 H -0.217 1.217 21 H -0.223 1.223 22 H -0.191 1.191 23 C 0.026 3.974 24 N -0.120 5.120 25 C -0.154 4.154 26 C -0.246 4.246 27 C -0.245 4.245 28 C -0.154 4.154 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.238 0.762 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.240 0.760 38 H 0.084 0.916 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.041 0.959 47 H 0.185 0.815 48 H 0.159 0.841 49 H 0.162 0.838 50 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.328 10.758 -15.519 18.930 hybrid contribution 0.459 -1.037 0.503 1.240 sum 1.787 9.722 -15.016 17.978 Atomic orbital electron populations 1.22183 0.92867 1.02794 1.03706 1.20987 0.95820 0.96289 0.81219 0.87689 1.21943 1.04097 1.00845 0.91675 1.20351 0.78731 0.85154 0.84544 1.90563 1.42015 1.25105 1.86829 1.45789 1.52093 1.31288 1.04609 1.20787 0.93919 0.90903 0.85981 1.22484 0.81226 0.95749 1.00897 1.86455 1.19027 1.35528 1.97655 1.21674 0.93455 0.97300 1.02651 1.21871 0.99461 0.95773 0.98840 1.20539 0.83249 0.97921 0.93029 1.44255 1.01990 1.01118 1.84665 1.19352 0.97920 0.89485 1.32762 0.91354 1.25564 1.00004 1.01799 0.96105 1.70315 1.32083 1.28853 1.25470 0.85557 0.76915 0.80958 0.78784 1.21704 1.22279 1.19105 1.21080 0.96661 0.86352 0.93292 1.44440 1.39199 1.10123 1.18192 1.22036 1.06975 0.86557 0.99818 1.21153 1.05142 0.99995 0.98291 1.21153 1.07278 0.94089 1.01937 1.22245 1.01023 1.00686 0.91447 0.89753 0.91947 0.92221 0.87814 0.87801 0.76172 0.92516 0.91774 0.75968 0.91556 0.90143 0.92931 0.91617 0.93907 0.98431 0.94170 0.92289 0.95885 0.81546 0.84119 0.83755 0.80567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 8.98 71.98 0.65 -2.61 16 2 C 0.16 3.22 2.67 44.99 0.12 3.34 16 3 H 0.11 2.13 7.88 -2.39 -0.02 2.11 16 4 C -0.15 -3.11 5.16 29.85 0.15 -2.95 16 5 C 0.53 13.88 6.90 87.66 0.60 14.49 16 6 O -0.56 -16.23 10.24 -3.03 -0.03 -16.26 16 7 N -0.69 -20.43 4.01 -422.58 -1.69 -22.12 16 8 C 0.17 5.43 0.45 3.68 0.00 5.43 16 9 C 0.08 2.03 5.73 71.98 0.41 2.44 16 10 O -0.58 -14.88 13.02 -148.98 -1.94 -16.82 16 11 C -0.11 -3.55 4.44 30.62 0.14 -3.41 16 12 C -0.12 -4.27 5.93 30.67 0.18 -4.09 16 13 C 0.18 8.08 5.42 86.36 0.47 8.55 16 14 N -0.60 -27.64 2.91 -699.13 -2.03 -29.67 16 15 C -0.27 -13.65 9.50 84.03 0.80 -12.85 16 16 H 0.07 3.43 7.97 -2.91 -0.02 3.40 16 17 C -0.04 -2.01 4.58 84.86 0.39 -1.62 16 18 N -0.92 -53.00 11.93 21.65 0.26 -52.74 16 19 Si 0.95 42.97 29.64 68.60 2.03 45.01 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 21 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 C 0.15 5.94 5.03 86.36 0.43 6.38 16 24 N -0.44 -9.31 2.62 -501.99 -1.31 -10.63 16 25 C -0.02 -0.52 10.45 83.21 0.87 0.35 16 26 C -0.22 -4.85 10.86 22.14 0.24 -4.60 16 27 C -0.22 -4.62 10.86 22.14 0.24 -4.38 16 28 C -0.02 -0.49 11.39 83.22 0.95 0.46 16 29 H 0.08 2.00 5.95 -2.38 -0.01 1.98 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.19 7.92 -2.39 -0.02 1.18 16 32 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.10 2.18 8.05 -2.39 -0.02 2.16 16 34 H 0.40 12.69 8.48 -92.71 -0.79 11.90 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.75 6.26 -2.39 -0.01 1.74 16 37 H 0.39 6.27 9.12 -74.06 -0.68 5.60 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.08 2.47 6.21 -2.38 -0.01 2.46 16 40 H 0.05 1.89 7.48 -2.39 -0.02 1.87 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.04 2.20 6.35 -2.39 -0.02 2.18 16 43 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 45 H 0.06 2.38 7.71 -2.39 -0.02 2.37 16 46 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 47 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 48 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 49 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 50 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -63.22 390.94 1.41 -61.81 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -0.52 Total: 36.52 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 6.64 Total: 4.91 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -4.78 Total: -115.17 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -1.97 Total: -33.08 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.01 kcal Total: -63.22 1.41 -61.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279517780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.041 kcal (2) G-P(sol) polarization free energy of solvation -63.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds