Wall clock time and date at job start Tue Mar 31 2020 18:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.47107 * 120.00322 * 2 1 4 4 O 1.21607 * 119.99793 * 79.88170 * 3 2 1 5 5 N 1.34776 * 120.00061 * 259.88703 * 3 2 1 6 6 C 1.47020 * 125.64824 * 5.05555 * 5 3 2 7 7 C 1.54326 * 107.27327 * 181.02620 * 6 5 3 8 8 H 1.08994 * 110.72265 * 140.55520 * 7 6 5 9 9 C 1.52998 * 110.71692 * 263.65251 * 7 6 5 10 10 C 1.55155 * 102.93790 * 22.18810 * 7 6 5 11 11 H 1.09005 * 111.00504 * 82.57759 * 10 7 6 12 12 N 1.46905 * 111.00323 * 206.38378 * 10 7 6 13 13 C 1.46891 * 111.00048 * 205.00075 * 12 10 7 14 14 C 1.50701 * 109.47153 * 180.02562 * 13 12 10 15 15 O 1.21291 * 119.99807 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99941 * 180.02562 * 14 13 12 17 17 C 1.37104 * 119.99492 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00156 * 359.97438 * 17 16 14 19 19 C 1.38947 * 119.99397 * 180.02562 * 17 16 14 20 20 N 1.31418 * 119.99374 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00292 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46891 * 90.00519 * 21 19 17 23 23 H 1.48500 * 109.46963 * 210.00220 * 21 19 17 24 24 H 1.48491 * 109.47038 * 330.00399 * 21 19 17 25 25 C 1.47427 * 125.64888 * 184.74914 * 5 3 2 26 26 C 1.32996 * 119.99870 * 180.02562 * 2 1 3 27 27 C 1.51405 * 136.31469 * 179.62744 * 26 2 1 28 28 C 1.53377 * 87.51694 * 206.05614 * 27 26 2 29 29 C 1.51404 * 136.31629 * 359.97438 * 26 2 1 30 30 H 1.09003 * 109.47118 * 85.14051 * 1 2 3 31 31 H 1.09008 * 109.47036 * 325.14296 * 1 2 3 32 32 H 1.08994 * 109.47145 * 205.14140 * 1 2 3 33 33 H 1.08999 * 109.88353 * 300.43919 * 6 5 3 34 34 H 1.09001 * 109.88590 * 61.60418 * 6 5 3 35 35 H 1.09003 * 109.47468 * 58.54423 * 9 7 6 36 36 H 1.09002 * 109.46917 * 178.54326 * 9 7 6 37 37 H 1.08995 * 109.47393 * 298.54213 * 9 7 6 38 38 H 1.00900 * 111.00178 * 328.96144 * 12 10 7 39 39 H 1.09000 * 109.47746 * 300.00424 * 13 12 10 40 40 H 1.09005 * 109.47384 * 60.00486 * 13 12 10 41 41 H 0.96986 * 120.00190 * 359.97438 * 16 14 13 42 42 H 0.97002 * 119.99421 * 179.97438 * 20 19 17 43 43 H 1.09004 * 110.36343 * 274.74836 * 25 5 3 44 44 H 1.09000 * 110.36640 * 37.06383 * 25 5 3 45 45 H 1.08994 * 113.56601 * 320.63802 * 27 26 2 46 46 H 1.09000 * 113.55770 * 91.37223 * 27 26 2 47 47 H 1.09000 * 113.96642 * 220.29472 * 28 27 26 48 48 H 1.08997 * 113.60037 * 88.79632 * 28 27 26 49 49 H 1.08997 * 113.56007 * 268.62752 * 29 26 2 50 50 H 1.09002 * 113.56054 * 39.29115 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 2.3863 1.8930 1.0368 5 7 2.7570 1.7550 -1.1491 6 6 2.5695 1.1680 -2.4838 7 6 3.3595 2.0394 -3.4829 8 1 3.8495 1.4185 -4.2328 9 6 2.4417 3.0664 -4.1490 10 6 4.4085 2.7396 -2.5792 11 1 5.2670 2.0915 -2.4027 12 7 4.8307 4.0218 -3.1586 13 6 6.1710 4.3961 -2.6885 14 6 6.5688 5.7138 -3.3021 15 8 5.8101 6.2851 -4.0565 16 7 7.7677 6.2574 -3.0126 17 6 8.1293 7.4565 -3.5705 18 1 7.4537 7.9652 -4.2422 19 6 9.3655 8.0166 -3.2724 20 7 9.7118 9.1662 -3.8068 21 14 10.5342 7.1364 -2.1111 22 1 11.4126 6.2261 -2.8890 23 1 11.3672 8.1361 -1.3955 24 1 9.7521 6.3474 -1.1259 25 6 3.5958 2.9607 -1.2765 26 6 2.1719 -1.1518 -0.0005 27 6 3.6250 -1.5772 -0.0075 28 6 3.1707 -2.8815 -0.6744 29 6 1.8137 -2.6228 -0.0007 30 1 -0.3633 0.0871 -1.0240 31 1 -0.3633 0.8433 0.5874 32 1 -0.3633 -0.9303 0.4366 33 1 2.9534 0.1480 -2.4975 34 1 1.5112 1.1714 -2.7450 35 1 1.9853 3.6956 -3.3848 36 1 3.0244 3.6868 -4.8300 37 1 1.6615 2.5486 -4.7068 38 1 4.7962 3.9920 -4.1666 39 1 6.1624 4.4894 -1.6025 40 1 6.8866 3.6278 -2.9814 41 1 8.3742 5.8008 -2.4091 42 1 10.5747 9.5574 -3.5984 43 1 2.9712 3.8499 -1.3625 44 1 4.2664 3.0484 -0.4217 45 1 4.2566 -0.9601 -0.6464 46 1 4.0419 -1.7197 0.9894 47 1 3.6833 -3.7696 -0.3048 48 1 3.1397 -2.8275 -1.7626 49 1 1.7343 -3.0520 0.9981 50 1 0.9590 -2.8631 -0.6332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281393112.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:17 Heat of formation + Delta-G solvation = -21.932631 kcal Electronic energy + Delta-G solvation = -29111.646676 eV Core-core repulsion = 25140.074966 eV Total energy + Delta-G solvation = -3971.571710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.62634 -39.20254 -38.48370 -37.87582 -34.85843 -33.89434 -33.36074 -32.24249 -31.64751 -29.11245 -27.25301 -26.74046 -26.38830 -25.93282 -24.24965 -23.28811 -22.13678 -20.30536 -19.89742 -19.41164 -18.53439 -18.13095 -16.85780 -16.50311 -16.08166 -15.79262 -15.73464 -15.45395 -15.35692 -14.76218 -14.43886 -14.10827 -13.75050 -13.59408 -13.50932 -13.38742 -13.20328 -12.89566 -12.83213 -12.67157 -12.50704 -12.45796 -12.32441 -12.20015 -12.03918 -11.93770 -11.86912 -11.38442 -11.24292 -11.16371 -10.98236 -10.84950 -10.76122 -10.59800 -9.98723 -9.96663 -9.58169 -9.15730 -8.83976 -8.61760 -8.26608 -8.18142 -6.31830 -3.83323 1.38207 2.40352 2.78052 3.03043 3.06309 3.15083 3.72182 3.87074 4.01709 4.06693 4.09955 4.19992 4.26885 4.34502 4.63978 4.66674 4.69730 4.83857 4.94299 5.04507 5.14177 5.17890 5.20815 5.21500 5.22917 5.26692 5.30659 5.32681 5.41315 5.46853 5.52993 5.54964 5.63364 5.68353 5.74500 5.76628 5.78684 5.83078 5.87590 5.92447 6.00043 6.11069 6.28670 6.37339 7.01854 7.28737 7.48426 7.57169 7.95132 8.13347 8.58558 8.93944 9.41472 9.81013 10.81209 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.002284 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.635096 B =12254.613710 C =12821.843508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.135 4.135 3 C 0.578 3.422 4 O -0.535 6.535 5 N -0.611 5.611 6 C 0.111 3.889 7 C -0.106 4.106 8 H 0.088 0.912 9 C -0.138 4.138 10 C 0.077 3.923 11 H 0.062 0.938 12 N -0.653 5.653 13 C 0.046 3.954 14 C 0.450 3.550 15 O -0.564 6.564 16 N -0.590 5.590 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.879 3.121 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C 0.116 3.884 26 C -0.119 4.119 27 C -0.109 4.109 28 C -0.136 4.136 29 C -0.099 4.099 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.357 0.643 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.085 0.915 49 H 0.095 0.905 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 -27.410 4.897 31.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.138 4.138 3 C 0.366 3.634 4 O -0.411 6.411 5 N -0.346 5.346 6 C -0.013 4.013 7 C -0.126 4.126 8 H 0.107 0.893 9 C -0.196 4.196 10 C -0.035 4.035 11 H 0.080 0.920 12 N -0.288 5.288 13 C -0.087 4.087 14 C 0.236 3.764 15 O -0.446 6.446 16 N -0.229 5.229 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.521 5.521 21 Si 0.706 3.294 22 H -0.197 1.197 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.007 4.007 26 C -0.120 4.120 27 C -0.146 4.146 28 C -0.173 4.173 29 C -0.136 4.136 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.179 0.821 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.203 0.797 42 H 0.084 0.916 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.103 0.897 49 H 0.113 0.887 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.565 -26.142 5.436 30.906 hybrid contribution 1.753 -1.124 0.458 2.132 sum -13.812 -27.266 5.894 31.127 Atomic orbital electron populations 1.20567 0.89249 1.03273 1.02422 1.20375 0.96425 0.90762 1.06230 1.17983 0.78343 0.84819 0.82219 1.90835 1.59189 1.59746 1.31366 1.48431 1.51338 1.28131 1.06659 1.22088 1.00546 0.96927 0.81726 1.22401 0.96387 0.97181 0.96590 0.89330 1.21701 0.98666 0.98253 1.00948 1.22715 0.96080 0.90368 0.94293 0.92034 1.59987 1.25854 1.28212 1.14707 1.21807 0.89645 0.96249 1.01003 1.19653 0.82970 0.87583 0.86200 1.90566 1.51536 1.63598 1.38925 1.42210 1.15757 1.21599 1.43377 1.19428 1.02371 0.95745 1.25799 0.86254 1.25046 0.97205 0.96087 0.97846 1.69626 1.22208 1.16906 1.43327 0.86671 0.81624 0.79970 0.81140 1.19678 1.20144 1.19441 1.22332 0.93314 0.87516 0.97565 1.23024 0.97620 0.93791 0.97603 1.22189 0.93744 0.96905 1.01752 1.22642 0.96700 0.97673 1.00312 1.22175 0.98284 0.91554 1.01573 0.91089 0.91070 0.91070 0.91513 0.91039 0.91734 0.91135 0.92789 0.82087 0.89407 0.93579 0.79683 0.91605 0.89815 0.90678 0.90889 0.88618 0.90470 0.89677 0.88651 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.01 36.00 0.36 -0.37 16 2 C -0.13 -1.31 4.93 -102.85 -0.51 -1.82 16 3 C 0.58 7.49 7.15 -12.66 -0.09 7.40 16 4 O -0.53 -9.20 17.40 5.27 0.09 -9.11 16 5 N -0.61 -6.90 3.32 -171.77 -0.57 -7.47 16 6 C 0.11 0.92 6.05 -3.06 -0.02 0.90 16 7 C -0.11 -0.92 3.38 -88.79 -0.30 -1.22 16 8 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 9 C -0.14 -1.30 8.50 37.16 0.32 -0.98 16 10 C 0.08 0.85 3.19 -65.45 -0.21 0.64 16 11 H 0.06 0.65 7.83 -51.93 -0.41 0.24 16 12 N -0.65 -9.34 5.39 -105.60 -0.57 -9.91 16 13 C 0.05 0.73 6.03 -4.98 -0.03 0.70 16 14 C 0.45 10.02 7.82 -10.98 -0.09 9.93 16 15 O -0.56 -14.82 15.78 5.55 0.09 -14.74 16 16 N -0.59 -13.96 5.09 -10.96 -0.06 -14.02 16 17 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 18 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 19 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 20 N -0.88 -25.75 13.96 55.50 0.77 -24.97 16 21 Si 0.88 19.41 27.74 -169.99 -4.71 14.70 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 25 C 0.12 1.45 6.28 -2.41 -0.02 1.44 16 26 C -0.12 -0.97 6.65 -100.48 -0.67 -1.64 16 27 C -0.11 -0.81 7.83 -27.56 -0.22 -1.02 16 28 C -0.14 -0.71 8.17 -26.19 -0.21 -0.92 16 29 C -0.10 -0.55 7.63 -27.39 -0.21 -0.75 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.07 0.42 7.78 -51.93 -0.40 0.02 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.53 7.84 -51.93 -0.41 0.12 16 35 H 0.06 0.71 7.44 -51.93 -0.39 0.32 16 36 H 0.07 0.75 6.76 -51.93 -0.35 0.40 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.36 5.17 6.72 -39.29 -0.26 4.90 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 41 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.08 1.18 7.71 -51.93 -0.40 0.78 16 44 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 406.10 15.07 6.12 6.12 Total: -1.00 -34.56 406.10 -9.30 -43.86 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -8.32 Total: 10.98 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -2.13 Total: 4.55 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.42 Total: -56.36 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.18 Total: -23.85 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -4.71 Total: 14.70 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.56 -9.30 -43.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281393112.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.925 kcal (2) G-P(sol) polarization free energy of solvation -34.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds