Wall clock time and date at job start Tue Mar 31 2020 18:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.47107 * 120.00322 * 2 1 4 4 O 1.21607 * 119.99793 * 79.88170 * 3 2 1 5 5 N 1.34776 * 120.00061 * 259.88703 * 3 2 1 6 6 C 1.47020 * 125.64824 * 5.05555 * 5 3 2 7 7 C 1.54326 * 107.27327 * 181.02620 * 6 5 3 8 8 H 1.08994 * 110.72265 * 140.55520 * 7 6 5 9 9 C 1.52998 * 110.71692 * 263.65251 * 7 6 5 10 10 C 1.55155 * 102.93790 * 22.18810 * 7 6 5 11 11 H 1.09005 * 111.00504 * 82.57759 * 10 7 6 12 12 N 1.46905 * 111.00323 * 206.38378 * 10 7 6 13 13 C 1.46891 * 111.00048 * 205.00075 * 12 10 7 14 14 C 1.50701 * 109.47153 * 180.02562 * 13 12 10 15 15 O 1.21291 * 119.99807 * 0.02562 * 14 13 12 16 16 N 1.34783 * 119.99941 * 180.02562 * 14 13 12 17 17 C 1.37104 * 119.99492 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00156 * 359.97438 * 17 16 14 19 19 C 1.38947 * 119.99397 * 180.02562 * 17 16 14 20 20 N 1.31418 * 119.99374 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00292 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.46891 * 90.00519 * 21 19 17 23 23 H 1.48500 * 109.46963 * 210.00220 * 21 19 17 24 24 H 1.48491 * 109.47038 * 330.00399 * 21 19 17 25 25 C 1.47427 * 125.64888 * 184.74914 * 5 3 2 26 26 C 1.32996 * 119.99870 * 180.02562 * 2 1 3 27 27 C 1.51405 * 136.31469 * 179.62744 * 26 2 1 28 28 C 1.53377 * 87.51694 * 206.05614 * 27 26 2 29 29 C 1.51404 * 136.31629 * 359.97438 * 26 2 1 30 30 H 1.09003 * 109.47118 * 85.14051 * 1 2 3 31 31 H 1.09008 * 109.47036 * 325.14296 * 1 2 3 32 32 H 1.08994 * 109.47145 * 205.14140 * 1 2 3 33 33 H 1.08999 * 109.88353 * 300.43919 * 6 5 3 34 34 H 1.09001 * 109.88590 * 61.60418 * 6 5 3 35 35 H 1.09003 * 109.47468 * 58.54423 * 9 7 6 36 36 H 1.09002 * 109.46917 * 178.54326 * 9 7 6 37 37 H 1.08995 * 109.47393 * 298.54213 * 9 7 6 38 38 H 1.00900 * 111.00178 * 328.96144 * 12 10 7 39 39 H 1.09000 * 109.47746 * 300.00424 * 13 12 10 40 40 H 1.09005 * 109.47384 * 60.00486 * 13 12 10 41 41 H 0.96986 * 120.00190 * 359.97438 * 16 14 13 42 42 H 0.97002 * 119.99421 * 179.97438 * 20 19 17 43 43 H 1.09004 * 110.36343 * 274.74836 * 25 5 3 44 44 H 1.09000 * 110.36640 * 37.06383 * 25 5 3 45 45 H 1.08994 * 113.56601 * 320.63802 * 27 26 2 46 46 H 1.09000 * 113.55770 * 91.37223 * 27 26 2 47 47 H 1.09000 * 113.96642 * 220.29472 * 28 27 26 48 48 H 1.08997 * 113.60037 * 88.79632 * 28 27 26 49 49 H 1.08997 * 113.56007 * 268.62752 * 29 26 2 50 50 H 1.09002 * 113.56054 * 39.29115 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 2.3863 1.8930 1.0368 5 7 2.7570 1.7550 -1.1491 6 6 2.5695 1.1680 -2.4838 7 6 3.3595 2.0394 -3.4829 8 1 3.8495 1.4185 -4.2328 9 6 2.4417 3.0664 -4.1490 10 6 4.4085 2.7396 -2.5792 11 1 5.2670 2.0915 -2.4027 12 7 4.8307 4.0218 -3.1586 13 6 6.1710 4.3961 -2.6885 14 6 6.5688 5.7138 -3.3021 15 8 5.8101 6.2851 -4.0565 16 7 7.7677 6.2574 -3.0126 17 6 8.1293 7.4565 -3.5705 18 1 7.4537 7.9652 -4.2422 19 6 9.3655 8.0166 -3.2724 20 7 9.7118 9.1662 -3.8068 21 14 10.5342 7.1364 -2.1111 22 1 11.4126 6.2261 -2.8890 23 1 11.3672 8.1361 -1.3955 24 1 9.7521 6.3474 -1.1259 25 6 3.5958 2.9607 -1.2765 26 6 2.1719 -1.1518 -0.0005 27 6 3.6250 -1.5772 -0.0075 28 6 3.1707 -2.8815 -0.6744 29 6 1.8137 -2.6228 -0.0007 30 1 -0.3633 0.0871 -1.0240 31 1 -0.3633 0.8433 0.5874 32 1 -0.3633 -0.9303 0.4366 33 1 2.9534 0.1480 -2.4975 34 1 1.5112 1.1714 -2.7450 35 1 1.9853 3.6956 -3.3848 36 1 3.0244 3.6868 -4.8300 37 1 1.6615 2.5486 -4.7068 38 1 4.7962 3.9920 -4.1666 39 1 6.1624 4.4894 -1.6025 40 1 6.8866 3.6278 -2.9814 41 1 8.3742 5.8008 -2.4091 42 1 10.5747 9.5574 -3.5984 43 1 2.9712 3.8499 -1.3625 44 1 4.2664 3.0484 -0.4217 45 1 4.2566 -0.9601 -0.6464 46 1 4.0419 -1.7197 0.9894 47 1 3.6833 -3.7696 -0.3048 48 1 3.1397 -2.8275 -1.7626 49 1 1.7343 -3.0520 0.9981 50 1 0.9590 -2.8631 -0.6332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281393112.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:16 Heat of formation + Delta-G solvation = -46.766155 kcal Electronic energy + Delta-G solvation = -29112.723538 eV Core-core repulsion = 25140.074966 eV Total energy + Delta-G solvation = -3972.648572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.50845 -40.36335 -39.66218 -38.91797 -36.26378 -35.63426 -34.08445 -33.75389 -33.09638 -30.16886 -28.29502 -27.59232 -27.36714 -26.41275 -25.79059 -24.27754 -22.85785 -21.34581 -20.98428 -20.80265 -20.29505 -19.10681 -17.72507 -17.54836 -17.34465 -16.99820 -16.66895 -16.52213 -16.31934 -16.13787 -15.66944 -15.12006 -15.01731 -14.77100 -14.58395 -14.44577 -14.19082 -14.07057 -13.95383 -13.73647 -13.39101 -13.35723 -13.27002 -13.10609 -13.08230 -12.90568 -12.87791 -12.50134 -12.43002 -12.08218 -11.99129 -11.83976 -11.77838 -11.63294 -11.52108 -11.38610 -10.84200 -10.44863 -10.25878 -9.82586 -9.72790 -9.40973 -8.42304 -6.02997 0.73538 1.29634 1.33861 1.43159 1.45961 1.90327 1.94182 2.21717 2.70374 3.14216 3.20180 3.29696 3.48417 3.52772 3.62601 3.81330 3.95837 4.01209 4.11621 4.21255 4.24080 4.27240 4.40326 4.42189 4.50980 4.52875 4.62272 4.68283 4.74148 4.75579 4.76434 4.78285 4.86067 4.87777 4.96539 5.00583 5.04320 5.09642 5.17475 5.23002 5.30026 5.38905 5.48886 5.52015 5.77969 5.88479 6.00588 6.32674 6.43355 6.58381 6.86914 6.99889 7.38553 7.94523 8.75248 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.002284 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.635096 B =12254.613710 C =12821.843508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.158 4.158 3 C 0.572 3.428 4 O -0.592 6.592 5 N -0.608 5.608 6 C 0.111 3.889 7 C -0.096 4.096 8 H 0.118 0.882 9 C -0.136 4.136 10 C 0.084 3.916 11 H 0.081 0.919 12 N -0.670 5.670 13 C 0.060 3.940 14 C 0.450 3.550 15 O -0.611 6.611 16 N -0.592 5.592 17 C -0.327 4.327 18 H 0.057 0.943 19 C -0.016 4.016 20 N -0.934 5.934 21 Si 0.964 3.036 22 H -0.254 1.254 23 H -0.276 1.276 24 H -0.235 1.235 25 C 0.114 3.886 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.124 4.124 29 C -0.092 4.092 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.055 0.945 37 H 0.076 0.924 38 H 0.356 0.644 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.389 0.611 42 H 0.279 0.721 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.094 0.906 49 H 0.104 0.896 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.530 -32.317 5.510 35.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.161 4.161 3 C 0.363 3.637 4 O -0.473 6.473 5 N -0.340 5.340 6 C -0.011 4.011 7 C -0.115 4.115 8 H 0.136 0.864 9 C -0.193 4.193 10 C -0.027 4.027 11 H 0.099 0.901 12 N -0.305 5.305 13 C -0.072 4.072 14 C 0.238 3.762 15 O -0.495 6.495 16 N -0.234 5.234 17 C -0.456 4.456 18 H 0.075 0.925 19 C -0.214 4.214 20 N -0.574 5.574 21 Si 0.784 3.216 22 H -0.179 1.179 23 H -0.201 1.201 24 H -0.158 1.158 25 C -0.009 4.009 26 C -0.115 4.115 27 C -0.158 4.158 28 C -0.162 4.162 29 C -0.129 4.129 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.178 0.822 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.225 0.775 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.112 0.888 49 H 0.122 0.878 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.170 -31.093 6.018 35.115 hybrid contribution 1.526 0.460 0.183 1.604 sum -13.645 -30.632 6.201 34.102 Atomic orbital electron populations 1.20582 0.87835 1.03427 1.03226 1.20322 0.97251 0.89526 1.08975 1.18634 0.77838 0.85580 0.81660 1.90792 1.61422 1.61658 1.33406 1.48506 1.50355 1.27458 1.07674 1.22280 1.01544 0.97561 0.79678 1.22417 0.95461 0.96911 0.96740 0.86443 1.21665 0.99192 0.98256 1.00206 1.22693 0.97034 0.89237 0.93716 0.90115 1.59883 1.25103 1.30650 1.14822 1.21706 0.91331 0.92990 1.01194 1.20904 0.81641 0.89033 0.84607 1.90546 1.52761 1.65432 1.40802 1.42048 1.16862 1.20481 1.43973 1.19005 1.02339 0.97846 1.26451 0.92529 1.26109 0.98901 0.96746 0.99668 1.69807 1.23239 1.19126 1.45263 0.85375 0.78557 0.78931 0.78735 1.17855 1.20138 1.15803 1.22209 0.93172 0.87587 0.97981 1.23391 0.98381 0.94710 0.95041 1.22329 0.93247 0.98325 1.01864 1.22641 0.96083 0.96744 1.00690 1.22250 0.99171 0.88987 1.02485 0.89599 0.92886 0.89257 0.89307 0.89718 0.94088 0.92620 0.90516 0.82154 0.87822 0.89813 0.77542 0.91156 0.92182 0.92332 0.91667 0.88912 0.89201 0.88754 0.87760 0.88955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 10.01 71.23 0.71 -0.55 16 2 C -0.16 -2.87 4.93 -18.70 -0.09 -2.96 16 3 C 0.57 14.86 7.15 86.57 0.62 15.48 16 4 O -0.59 -21.30 17.40 -4.05 -0.07 -21.37 16 5 N -0.61 -13.23 3.32 -815.62 -2.71 -15.94 16 6 C 0.11 1.54 6.05 86.73 0.53 2.06 16 7 C -0.10 -1.40 3.38 -9.61 -0.03 -1.43 16 8 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 9 C -0.14 -2.38 8.50 71.98 0.61 -1.76 16 10 C 0.08 1.69 3.19 46.38 0.15 1.84 16 11 H 0.08 1.39 7.83 -2.38 -0.02 1.37 16 12 N -0.67 -18.43 5.39 -488.02 -2.63 -21.06 16 13 C 0.06 1.80 6.03 85.56 0.52 2.31 16 14 C 0.45 20.11 7.82 87.66 0.69 20.80 16 15 O -0.61 -33.41 15.78 -3.06 -0.05 -33.46 16 16 N -0.59 -27.95 5.09 -306.97 -1.56 -29.51 16 17 C -0.33 -19.23 10.16 84.04 0.85 -18.38 16 18 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 19 C -0.02 -0.87 5.50 84.92 0.47 -0.40 16 20 N -0.93 -56.60 13.96 21.66 0.30 -56.29 16 21 Si 0.96 39.16 27.74 68.60 1.90 41.07 16 22 H -0.25 -9.66 7.11 99.48 0.71 -8.96 16 23 H -0.28 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.23 -8.15 6.52 99.48 0.65 -7.50 16 25 C 0.11 2.87 6.28 86.93 0.55 3.42 16 26 C -0.11 -1.58 6.65 -17.17 -0.11 -1.70 16 27 C -0.12 -1.49 7.83 30.06 0.24 -1.26 16 28 C -0.12 -0.83 8.17 30.95 0.25 -0.57 16 29 C -0.09 -0.68 7.63 30.16 0.23 -0.45 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.09 0.85 7.78 -2.39 -0.02 0.83 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.00 7.84 -2.39 -0.02 0.98 16 35 H 0.04 0.90 7.44 -2.39 -0.02 0.89 16 36 H 0.05 1.15 6.76 -2.39 -0.02 1.14 16 37 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.36 10.00 6.72 -89.69 -0.60 9.40 16 39 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.08 1.95 8.09 -2.38 -0.02 1.93 16 41 H 0.39 15.28 5.76 -92.72 -0.53 14.75 16 42 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.06 1.78 7.71 -2.38 -0.02 1.76 16 44 H 0.06 1.64 8.09 -2.39 -0.02 1.62 16 45 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -83.46 406.10 1.10 -82.36 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: -0.25 Total: 37.77 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 6.16 Total: 16.44 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -6.60 Total: -122.81 kcal Atomic # 8 Polarization: -54.71 SS G_CDS: -0.12 Total: -54.83 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 1.90 Total: 41.07 kcal Total: -83.46 1.10 -82.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281393112.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.598 kcal (2) G-P(sol) polarization free energy of solvation -83.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds