Wall clock time and date at job start Tue Mar 31 2020 18:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.47103 * 119.99884 * 2 1 4 4 O 1.21618 * 119.99597 * 79.82890 * 3 2 1 5 5 N 1.34777 * 120.00453 * 259.82828 * 3 2 1 6 6 C 1.48117 * 127.03203 * 355.06945 * 5 3 2 7 7 C 1.54944 * 103.25466 * 140.67023 * 6 5 3 8 8 H 1.09001 * 110.73954 * 279.03744 * 7 6 5 9 9 C 1.52996 * 110.73803 * 155.71245 * 7 6 5 10 10 C 1.54618 * 102.83675 * 37.37620 * 7 6 5 11 11 H 1.09010 * 110.32227 * 219.25822 * 10 7 6 12 12 N 1.46902 * 110.41445 * 97.08947 * 10 7 6 13 13 C 1.46900 * 111.00107 * 156.49061 * 12 10 7 14 14 C 1.50692 * 109.46967 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00206 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99983 * 180.02562 * 14 13 12 17 17 C 1.37101 * 120.00319 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99718 * 359.97438 * 17 16 14 19 19 C 1.38944 * 120.00099 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00169 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99760 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47100 * 90.00001 * 21 19 17 23 23 H 1.48506 * 109.47145 * 209.99438 * 21 19 17 24 24 H 1.48499 * 109.47453 * 329.99702 * 21 19 17 25 25 C 1.47487 * 127.03196 * 175.01969 * 5 3 2 26 26 C 1.32987 * 119.99960 * 180.02562 * 2 1 3 27 27 C 1.51407 * 136.31263 * 179.63092 * 26 2 1 28 28 C 1.53384 * 87.51706 * 206.05162 * 27 26 2 29 29 C 1.51402 * 136.31810 * 359.97438 * 26 2 1 30 30 H 1.09001 * 109.47418 * 95.06488 * 1 2 3 31 31 H 1.08997 * 109.46781 * 215.06217 * 1 2 3 32 32 H 1.09001 * 109.47282 * 335.06264 * 1 2 3 33 33 H 1.08996 * 110.65826 * 259.11266 * 6 5 3 34 34 H 1.08998 * 110.66008 * 22.06325 * 6 5 3 35 35 H 1.08994 * 109.47198 * 306.58006 * 9 7 6 36 36 H 1.09000 * 109.47405 * 66.58430 * 9 7 6 37 37 H 1.09006 * 109.47127 * 186.58427 * 9 7 6 38 38 H 1.00901 * 110.99597 * 280.44025 * 12 10 7 39 39 H 1.09002 * 109.47042 * 300.00300 * 13 12 10 40 40 H 1.09007 * 109.46955 * 59.99838 * 13 12 10 41 41 H 0.97002 * 119.99727 * 359.97438 * 16 14 13 42 42 H 0.97006 * 119.99921 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.90652 * 86.12507 * 25 5 3 44 44 H 1.08998 * 110.07823 * 324.93842 * 25 5 3 45 45 H 1.08999 * 113.56264 * 320.62625 * 27 26 2 46 46 H 1.08997 * 113.56554 * 91.37358 * 27 26 2 47 47 H 1.08997 * 113.96766 * 220.29325 * 28 27 26 48 48 H 1.09000 * 113.71234 * 88.80651 * 28 27 26 49 49 H 1.08998 * 113.56133 * 268.62746 * 29 26 2 50 50 H 1.09001 * 113.56068 * 39.29271 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 2.3854 1.8935 1.0367 5 7 2.7580 1.7546 -1.1488 6 6 2.7658 1.0872 -2.4711 7 6 2.4809 2.2482 -3.4567 8 1 1.4138 2.4666 -3.4978 9 6 3.0226 1.9215 -4.8498 10 6 3.2578 3.4292 -2.8302 11 1 2.6843 4.3515 -2.9234 12 7 4.5700 3.5781 -3.4735 13 6 5.0772 4.9487 -3.3239 14 6 6.4220 5.0625 -3.9942 15 8 6.9102 4.0969 -4.5422 16 7 7.0828 6.2372 -3.9839 17 6 8.3061 6.3410 -4.5941 18 1 8.7405 5.4813 -5.0828 19 6 8.9871 7.5521 -4.5839 20 7 8.4584 8.5982 -3.9898 21 14 10.6542 7.6932 -5.4148 22 1 10.4682 8.0936 -6.8327 23 1 11.4712 8.7167 -4.7146 24 1 11.3484 6.3817 -5.3577 25 6 3.4287 3.0531 -1.3467 26 6 2.1719 -1.1517 -0.0005 27 6 3.6250 -1.5770 -0.0074 28 6 3.1708 -2.8815 -0.6743 29 6 1.8138 -2.6228 -0.0007 30 1 -0.3634 -0.0907 -1.0236 31 1 -0.3633 -0.8412 0.5904 32 1 -0.3634 0.9319 0.4333 33 1 3.7406 0.6428 -2.6717 34 1 1.9817 0.3320 -2.5253 35 1 4.0757 1.6502 -4.7757 36 1 2.4614 1.0877 -5.2716 37 1 2.9168 2.7940 -5.4946 38 1 5.2294 2.9068 -3.1094 39 1 4.3797 5.6467 -3.7869 40 1 5.1783 5.1850 -2.2646 41 1 6.6925 7.0093 -3.5453 42 1 8.9336 9.4438 -3.9830 43 1 4.4881 2.9641 -1.1059 44 1 2.9673 3.8126 -0.7155 45 1 4.2566 -0.9599 -0.6465 46 1 4.0421 -1.7196 0.9894 47 1 3.6835 -3.7695 -0.3048 48 1 3.1394 -2.8296 -1.7626 49 1 1.7344 -3.0520 0.9981 50 1 0.9592 -2.8631 -0.6332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281393113.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:20 Heat of formation + Delta-G solvation = -26.770809 kcal Electronic energy + Delta-G solvation = -29154.993130 eV Core-core repulsion = 25183.211621 eV Total energy + Delta-G solvation = -3971.781509 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.55368 -39.15043 -38.34270 -37.74486 -34.63620 -33.82424 -33.28632 -32.30265 -31.21701 -29.10869 -27.10519 -26.35895 -26.11203 -25.87810 -24.25803 -23.51441 -22.32008 -20.24233 -19.75030 -19.29788 -18.19962 -17.89821 -16.82433 -16.51975 -16.01017 -15.82421 -15.67860 -15.39872 -15.09568 -14.54797 -14.20723 -14.03583 -13.80416 -13.62031 -13.53497 -13.39156 -12.97211 -12.87371 -12.81746 -12.56116 -12.39566 -12.24113 -12.07247 -11.99298 -11.90775 -11.72624 -11.54613 -11.33378 -11.27043 -11.04718 -10.80140 -10.75146 -10.67885 -10.40193 -10.22687 -9.94992 -9.51860 -9.10652 -8.88667 -8.49876 -8.11201 -7.97151 -6.42474 -3.83436 1.41891 2.42047 2.80358 3.17338 3.26130 3.31748 3.89290 3.91149 4.04826 4.14147 4.27200 4.33111 4.38060 4.49971 4.70024 4.74614 4.86525 4.99620 5.09732 5.14870 5.17671 5.23086 5.24832 5.25603 5.26961 5.32886 5.37574 5.47221 5.53271 5.55017 5.59301 5.64546 5.68944 5.73665 5.80196 5.85836 5.87559 5.93282 6.01598 6.11537 6.20495 6.26289 6.40869 6.60700 7.14407 7.33843 7.54344 7.55793 7.96428 8.05064 8.59885 9.16852 9.53230 10.04216 10.75179 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.002177 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.775386 B =12856.850338 C =13019.815786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.137 4.137 3 C 0.581 3.419 4 O -0.539 6.539 5 N -0.613 5.613 6 C 0.103 3.897 7 C -0.094 4.094 8 H 0.081 0.919 9 C -0.121 4.121 10 C 0.078 3.922 11 H 0.093 0.907 12 N -0.650 5.650 13 C 0.047 3.953 14 C 0.441 3.559 15 O -0.584 6.584 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C 0.075 3.925 26 C -0.118 4.118 27 C -0.110 4.110 28 C -0.136 4.136 29 C -0.099 4.099 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.351 0.649 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.086 0.914 49 H 0.095 0.905 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.477 -18.778 5.876 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.140 4.140 3 C 0.370 3.630 4 O -0.416 6.416 5 N -0.346 5.346 6 C -0.019 4.019 7 C -0.113 4.113 8 H 0.099 0.901 9 C -0.179 4.179 10 C -0.034 4.034 11 H 0.111 0.889 12 N -0.282 5.282 13 C -0.085 4.085 14 C 0.226 3.774 15 O -0.468 6.468 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.542 5.542 21 Si 0.757 3.243 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.049 4.049 26 C -0.119 4.119 27 C -0.147 4.147 28 C -0.173 4.173 29 C -0.136 4.136 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.171 0.829 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.113 0.887 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.254 -18.808 5.551 26.120 hybrid contribution 0.907 0.837 0.905 1.530 sum -16.347 -17.972 6.456 25.137 Atomic orbital electron populations 1.20540 0.89163 1.03214 1.02351 1.20342 0.96375 0.90685 1.06589 1.18015 0.77962 0.85008 0.82049 1.90827 1.59645 1.60128 1.30985 1.48778 1.57483 1.19288 1.09065 1.22729 1.02195 0.95867 0.81152 1.22310 0.99537 0.93714 0.95788 0.90069 1.21434 1.01705 1.00900 0.93871 1.22553 0.92534 0.99176 0.89173 0.88855 1.60267 1.03175 1.04808 1.59937 1.21753 0.96801 0.91087 0.98889 1.19767 0.86977 0.84517 0.86091 1.90521 1.69390 1.37744 1.49150 1.41870 1.18395 1.10163 1.49556 1.19692 0.94323 0.97527 1.31328 0.87925 1.25266 1.00064 0.95000 0.97632 1.69613 1.39464 1.01555 1.43617 0.85860 0.81310 0.78168 0.78959 1.20380 1.20943 1.19435 1.23003 0.97721 0.85619 0.98584 1.23072 0.97740 0.93867 0.97214 1.22198 0.93690 0.97011 1.01780 1.22644 0.96562 0.97646 1.00439 1.22179 0.98366 0.91495 1.01559 0.91008 0.91035 0.91327 0.90577 0.90249 0.91047 0.93955 0.91746 0.82860 0.89409 0.93753 0.77451 0.91857 0.91358 0.90392 0.90754 0.88622 0.90464 0.89534 0.88663 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.74 9.96 36.01 0.36 -0.38 16 2 C -0.14 -1.40 4.55 -102.85 -0.47 -1.87 16 3 C 0.58 7.79 7.16 -12.66 -0.09 7.70 16 4 O -0.54 -9.43 17.49 5.26 0.09 -9.34 16 5 N -0.61 -7.23 3.29 -171.15 -0.56 -7.80 16 6 C 0.10 0.98 6.41 -2.13 -0.01 0.96 16 7 C -0.09 -0.91 3.64 -88.74 -0.32 -1.23 16 8 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 9 C -0.12 -1.27 8.52 37.16 0.32 -0.96 16 10 C 0.08 0.89 3.19 -66.34 -0.21 0.68 16 11 H 0.09 1.03 7.84 -51.92 -0.41 0.62 16 12 N -0.65 -9.48 4.20 -106.53 -0.45 -9.93 16 13 C 0.05 0.79 6.01 -4.98 -0.03 0.76 16 14 C 0.44 10.11 7.82 -10.99 -0.09 10.02 16 15 O -0.58 -15.36 15.78 5.55 0.09 -15.27 16 16 N -0.56 -14.11 5.29 -10.97 -0.06 -14.16 16 17 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 18 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 21 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C 0.08 0.93 6.59 -2.98 -0.02 0.91 16 26 C -0.12 -1.04 6.65 -100.49 -0.67 -1.71 16 27 C -0.11 -0.92 7.83 -27.55 -0.22 -1.14 16 28 C -0.14 -0.83 8.17 -26.18 -0.21 -1.05 16 29 C -0.10 -0.61 7.81 -27.39 -0.21 -0.82 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 32 H 0.07 0.58 8.08 -51.93 -0.42 0.17 16 33 H 0.08 0.74 8.02 -51.93 -0.42 0.32 16 34 H 0.08 0.64 7.34 -51.93 -0.38 0.26 16 35 H 0.07 0.88 7.41 -51.93 -0.38 0.49 16 36 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.35 5.46 7.86 -39.29 -0.31 5.15 16 39 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 40 H 0.04 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.07 0.92 7.57 -51.93 -0.39 0.52 16 44 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 410.73 15.07 6.19 6.19 Total: -1.00 -32.90 410.73 -9.57 -42.47 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -8.45 Total: 11.70 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -2.12 Total: 3.93 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.34 Total: -55.67 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: 0.18 Total: -24.61 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.90 -9.57 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281393113.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.697 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds