Wall clock time and date at job start Tue Mar 31 2020 18:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.47103 * 119.99884 * 2 1 4 4 O 1.21618 * 119.99597 * 79.82890 * 3 2 1 5 5 N 1.34777 * 120.00453 * 259.82828 * 3 2 1 6 6 C 1.48117 * 127.03203 * 355.06945 * 5 3 2 7 7 C 1.54944 * 103.25466 * 140.67023 * 6 5 3 8 8 H 1.09001 * 110.73954 * 279.03744 * 7 6 5 9 9 C 1.52996 * 110.73803 * 155.71245 * 7 6 5 10 10 C 1.54618 * 102.83675 * 37.37620 * 7 6 5 11 11 H 1.09010 * 110.32227 * 219.25822 * 10 7 6 12 12 N 1.46902 * 110.41445 * 97.08947 * 10 7 6 13 13 C 1.46900 * 111.00107 * 156.49061 * 12 10 7 14 14 C 1.50692 * 109.46967 * 179.97438 * 13 12 10 15 15 O 1.21290 * 120.00206 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99983 * 180.02562 * 14 13 12 17 17 C 1.37101 * 120.00319 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99718 * 359.97438 * 17 16 14 19 19 C 1.38944 * 120.00099 * 179.97438 * 17 16 14 20 20 N 1.31408 * 120.00169 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99760 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47100 * 90.00001 * 21 19 17 23 23 H 1.48506 * 109.47145 * 209.99438 * 21 19 17 24 24 H 1.48499 * 109.47453 * 329.99702 * 21 19 17 25 25 C 1.47487 * 127.03196 * 175.01969 * 5 3 2 26 26 C 1.32987 * 119.99960 * 180.02562 * 2 1 3 27 27 C 1.51407 * 136.31263 * 179.63092 * 26 2 1 28 28 C 1.53384 * 87.51706 * 206.05162 * 27 26 2 29 29 C 1.51402 * 136.31810 * 359.97438 * 26 2 1 30 30 H 1.09001 * 109.47418 * 95.06488 * 1 2 3 31 31 H 1.08997 * 109.46781 * 215.06217 * 1 2 3 32 32 H 1.09001 * 109.47282 * 335.06264 * 1 2 3 33 33 H 1.08996 * 110.65826 * 259.11266 * 6 5 3 34 34 H 1.08998 * 110.66008 * 22.06325 * 6 5 3 35 35 H 1.08994 * 109.47198 * 306.58006 * 9 7 6 36 36 H 1.09000 * 109.47405 * 66.58430 * 9 7 6 37 37 H 1.09006 * 109.47127 * 186.58427 * 9 7 6 38 38 H 1.00901 * 110.99597 * 280.44025 * 12 10 7 39 39 H 1.09002 * 109.47042 * 300.00300 * 13 12 10 40 40 H 1.09007 * 109.46955 * 59.99838 * 13 12 10 41 41 H 0.97002 * 119.99727 * 359.97438 * 16 14 13 42 42 H 0.97006 * 119.99921 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.90652 * 86.12507 * 25 5 3 44 44 H 1.08998 * 110.07823 * 324.93842 * 25 5 3 45 45 H 1.08999 * 113.56264 * 320.62625 * 27 26 2 46 46 H 1.08997 * 113.56554 * 91.37358 * 27 26 2 47 47 H 1.08997 * 113.96766 * 220.29325 * 28 27 26 48 48 H 1.09000 * 113.71234 * 88.80651 * 28 27 26 49 49 H 1.08998 * 113.56133 * 268.62746 * 29 26 2 50 50 H 1.09001 * 113.56068 * 39.29271 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 2.3854 1.8935 1.0367 5 7 2.7580 1.7546 -1.1488 6 6 2.7658 1.0872 -2.4711 7 6 2.4809 2.2482 -3.4567 8 1 1.4138 2.4666 -3.4978 9 6 3.0226 1.9215 -4.8498 10 6 3.2578 3.4292 -2.8302 11 1 2.6843 4.3515 -2.9234 12 7 4.5700 3.5781 -3.4735 13 6 5.0772 4.9487 -3.3239 14 6 6.4220 5.0625 -3.9942 15 8 6.9102 4.0969 -4.5422 16 7 7.0828 6.2372 -3.9839 17 6 8.3061 6.3410 -4.5941 18 1 8.7405 5.4813 -5.0828 19 6 8.9871 7.5521 -4.5839 20 7 8.4584 8.5982 -3.9898 21 14 10.6542 7.6932 -5.4148 22 1 10.4682 8.0936 -6.8327 23 1 11.4712 8.7167 -4.7146 24 1 11.3484 6.3817 -5.3577 25 6 3.4287 3.0531 -1.3467 26 6 2.1719 -1.1517 -0.0005 27 6 3.6250 -1.5770 -0.0074 28 6 3.1708 -2.8815 -0.6743 29 6 1.8138 -2.6228 -0.0007 30 1 -0.3634 -0.0907 -1.0236 31 1 -0.3633 -0.8412 0.5904 32 1 -0.3634 0.9319 0.4333 33 1 3.7406 0.6428 -2.6717 34 1 1.9817 0.3320 -2.5253 35 1 4.0757 1.6502 -4.7757 36 1 2.4614 1.0877 -5.2716 37 1 2.9168 2.7940 -5.4946 38 1 5.2294 2.9068 -3.1094 39 1 4.3797 5.6467 -3.7869 40 1 5.1783 5.1850 -2.2646 41 1 6.6925 7.0093 -3.5453 42 1 8.9336 9.4438 -3.9830 43 1 4.4881 2.9641 -1.1059 44 1 2.9673 3.8126 -0.7155 45 1 4.2566 -0.9599 -0.6465 46 1 4.0421 -1.7196 0.9894 47 1 3.6835 -3.7695 -0.3048 48 1 3.1394 -2.8296 -1.7626 49 1 1.7344 -3.0520 0.9981 50 1 0.9592 -2.8631 -0.6332 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281393113.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:19 Heat of formation + Delta-G solvation = -48.132876 kcal Electronic energy + Delta-G solvation = -29155.919459 eV Core-core repulsion = 25183.211621 eV Total energy + Delta-G solvation = -3972.707838 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.50698 -40.25792 -39.62818 -38.92508 -36.15741 -35.49230 -34.05761 -33.35264 -33.14576 -30.22950 -28.09955 -27.40398 -27.18200 -26.44208 -25.80428 -24.58253 -23.06837 -21.17778 -21.01472 -20.64799 -19.93465 -19.04195 -17.76465 -17.72129 -17.24050 -17.02642 -16.55813 -16.36498 -16.28897 -16.19122 -15.71565 -15.33177 -15.02063 -14.82906 -14.45718 -14.14259 -13.95762 -13.93537 -13.83551 -13.50182 -13.41704 -13.36428 -13.16427 -13.06158 -12.93197 -12.88080 -12.82061 -12.53015 -12.42131 -12.23960 -12.12733 -11.87341 -11.64815 -11.58789 -11.50521 -11.41784 -10.87304 -10.34125 -10.01745 -9.90594 -9.78024 -9.37740 -8.46979 -5.95635 0.70775 1.37585 1.41235 1.42145 1.53916 1.88242 2.05586 2.28406 2.86097 3.19723 3.20651 3.43482 3.50372 3.54908 3.69702 3.79412 3.92029 4.02678 4.10468 4.23617 4.28109 4.33371 4.41394 4.44166 4.51008 4.56741 4.66630 4.69815 4.72203 4.73413 4.75818 4.76659 4.80113 4.88581 4.98583 4.99236 5.06631 5.11253 5.24164 5.28314 5.33292 5.36361 5.40646 5.71439 5.75134 5.87137 6.07513 6.29902 6.38980 6.59488 6.95259 7.12317 7.56286 8.11071 8.70423 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.002177 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.775386 B =12856.850338 C =13019.815786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.157 4.157 3 C 0.575 3.425 4 O -0.592 6.592 5 N -0.610 5.610 6 C 0.107 3.893 7 C -0.084 4.084 8 H 0.102 0.898 9 C -0.115 4.115 10 C 0.083 3.917 11 H 0.106 0.894 12 N -0.653 5.653 13 C 0.061 3.939 14 C 0.440 3.560 15 O -0.620 6.620 16 N -0.575 5.575 17 C -0.332 4.332 18 H 0.080 0.920 19 C -0.015 4.015 20 N -0.921 5.921 21 Si 0.993 3.007 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.273 1.273 25 C 0.076 3.924 26 C -0.116 4.116 27 C -0.124 4.124 28 C -0.126 4.126 29 C -0.088 4.088 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.344 0.656 39 H 0.109 0.891 40 H 0.061 0.939 41 H 0.396 0.604 42 H 0.277 0.723 43 H 0.052 0.948 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.093 0.907 47 H 0.090 0.910 48 H 0.092 0.908 49 H 0.106 0.894 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.078 -20.291 5.272 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.160 4.160 3 C 0.366 3.634 4 O -0.473 6.473 5 N -0.342 5.342 6 C -0.015 4.015 7 C -0.103 4.103 8 H 0.120 0.880 9 C -0.173 4.173 10 C -0.028 4.028 11 H 0.124 0.876 12 N -0.284 5.284 13 C -0.071 4.071 14 C 0.227 3.773 15 O -0.506 6.506 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.098 0.902 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.816 3.184 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.049 4.049 26 C -0.117 4.117 27 C -0.161 4.161 28 C -0.163 4.163 29 C -0.125 4.125 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.163 0.837 39 H 0.127 0.873 40 H 0.079 0.921 41 H 0.230 0.770 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.111 0.889 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.124 0.876 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.883 -20.324 4.925 28.176 hybrid contribution 1.430 1.255 1.105 2.200 sum -17.453 -19.069 6.030 26.544 Atomic orbital electron populations 1.20570 0.87275 1.03159 1.03740 1.20370 0.97481 0.89345 1.08774 1.18665 0.77496 0.85749 0.81463 1.90787 1.61742 1.61947 1.32823 1.48870 1.56530 1.19085 1.09706 1.22820 1.02892 0.96132 0.79634 1.22297 1.00223 0.92651 0.95160 0.87988 1.21345 1.00720 1.01162 0.94035 1.22612 0.91116 1.00728 0.88389 0.87598 1.60309 1.04111 1.03376 1.60614 1.21619 0.93439 0.92935 0.99097 1.20818 0.88482 0.83164 0.84791 1.90491 1.70850 1.38791 1.50517 1.41952 1.18164 1.11064 1.50042 1.19656 0.96022 0.97471 1.32977 0.90239 1.26047 1.03247 0.94302 0.97831 1.69676 1.40698 1.01900 1.43958 0.84932 0.77089 0.78066 0.78283 1.19550 1.19695 1.19740 1.22918 0.96837 0.86083 0.99050 1.23407 0.98067 0.95024 0.95239 1.22339 0.93517 0.98524 1.01736 1.22642 0.96389 0.96613 1.00657 1.22222 0.98953 0.88792 1.02526 0.89102 0.89454 0.92706 0.90923 0.87991 0.93253 0.91616 0.93069 0.83672 0.87282 0.92147 0.77047 0.91351 0.92926 0.91155 0.92395 0.88903 0.89177 0.88951 0.87562 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.96 71.24 0.71 -0.52 16 2 C -0.16 -3.03 4.55 -18.70 -0.09 -3.12 16 3 C 0.58 15.54 7.16 86.57 0.62 16.16 16 4 O -0.59 -21.55 17.49 -4.09 -0.07 -21.62 16 5 N -0.61 -14.21 3.29 -813.65 -2.68 -16.88 16 6 C 0.11 1.85 6.41 86.73 0.56 2.41 16 7 C -0.08 -1.45 3.64 -9.58 -0.03 -1.49 16 8 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 9 C -0.11 -2.21 8.52 71.98 0.61 -1.60 16 10 C 0.08 1.81 3.19 45.80 0.15 1.96 16 11 H 0.11 2.11 7.84 -2.38 -0.02 2.09 16 12 N -0.65 -18.83 4.20 -490.97 -2.06 -20.89 16 13 C 0.06 2.02 6.01 85.55 0.51 2.53 16 14 C 0.44 20.52 7.82 87.65 0.69 21.20 16 15 O -0.62 -33.53 15.78 -3.06 -0.05 -33.57 16 16 N -0.57 -29.41 5.29 -306.99 -1.62 -31.03 16 17 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 18 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 19 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 20 N -0.92 -50.06 13.05 21.66 0.28 -49.78 16 21 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 C 0.08 1.89 6.59 86.53 0.57 2.46 16 26 C -0.12 -1.86 6.65 -17.17 -0.11 -1.98 16 27 C -0.12 -1.98 7.83 30.06 0.24 -1.74 16 28 C -0.13 -1.23 8.17 30.95 0.25 -0.98 16 29 C -0.09 -0.81 7.81 30.16 0.24 -0.58 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 0.89 8.05 -2.39 -0.02 0.87 16 32 H 0.05 0.89 8.08 -2.39 -0.02 0.87 16 33 H 0.07 1.34 8.02 -2.39 -0.02 1.32 16 34 H 0.10 1.35 7.34 -2.39 -0.02 1.33 16 35 H 0.05 1.18 7.41 -2.39 -0.02 1.16 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.34 10.87 7.86 -89.69 -0.71 10.16 16 39 H 0.11 3.18 8.07 -2.39 -0.02 3.16 16 40 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.40 19.32 7.90 -92.71 -0.73 18.59 16 42 H 0.28 14.11 8.31 -92.70 -0.77 13.34 16 43 H 0.05 1.47 7.57 -2.39 -0.02 1.45 16 44 H 0.07 1.85 8.10 -2.39 -0.02 1.83 16 45 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -73.67 410.73 1.52 -72.14 By element: Atomic # 1 Polarization: 40.60 SS G_CDS: -0.49 Total: 40.11 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: 6.18 Total: 16.39 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -6.08 Total: -118.58 kcal Atomic # 8 Polarization: -55.08 SS G_CDS: -0.12 Total: -55.20 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -73.67 1.52 -72.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281393113.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.010 kcal (2) G-P(sol) polarization free energy of solvation -73.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds