Wall clock time and date at job start Tue Mar 31 2020 18:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 110.29983 * 2 1 4 4 C 1.54384 * 110.34243 * 237.83106 * 2 1 3 5 5 N 1.48152 * 104.71928 * 217.19970 * 4 2 1 6 6 C 1.34773 * 127.84016 * 219.64312 * 5 4 2 7 7 O 1.21281 * 119.99961 * 356.05402 * 6 5 4 8 8 C 1.50695 * 120.00104 * 176.05390 * 6 5 4 9 9 C 1.53006 * 115.55046 * 174.56131 * 8 6 5 10 10 C 1.52995 * 117.49664 * 34.33008 * 9 8 6 11 11 C 1.52998 * 117.49727 * 325.66914 * 9 8 6 12 12 C 1.52998 * 117.50014 * 28.85557 * 8 6 5 13 13 C 1.52998 * 117.49914 * 320.22978 * 8 6 5 14 14 C 1.48436 * 104.17554 * 39.57121 * 5 4 2 15 15 C 1.54283 * 110.34428 * 122.28710 * 2 1 3 16 16 H 1.08998 * 110.34495 * 237.74184 * 15 2 1 17 17 N 1.46894 * 110.34408 * 0.02562 * 15 2 1 18 18 C 1.46896 * 111.00187 * 204.99951 * 17 15 2 19 19 C 1.50697 * 109.47445 * 179.97438 * 18 17 15 20 20 O 1.21301 * 120.00068 * 359.97438 * 19 18 17 21 21 N 1.34772 * 120.00557 * 179.97438 * 19 18 17 22 22 C 1.37097 * 120.00788 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99689 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00309 * 180.02562 * 22 21 19 25 25 N 1.31407 * 120.00067 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99888 * 179.97438 * 24 22 21 27 27 H 1.48508 * 109.47232 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47113 * 119.99871 * 26 24 22 29 29 H 1.48503 * 109.47225 * 239.99748 * 26 24 22 30 30 H 1.09000 * 109.46320 * 180.71889 * 1 2 3 31 31 H 1.08996 * 109.46781 * 300.71668 * 1 2 3 32 32 H 1.08995 * 109.46999 * 60.72305 * 1 2 3 33 33 H 1.09001 * 110.40845 * 336.04151 * 4 2 1 34 34 H 1.09001 * 110.41003 * 98.35890 * 4 2 1 35 35 H 1.09002 * 115.54862 * 180.02562 * 9 8 6 36 36 H 1.08996 * 117.50458 * 359.97438 * 10 9 8 37 37 H 1.09004 * 117.49508 * 145.02343 * 10 9 8 38 38 H 1.09000 * 117.49993 * 214.97453 * 11 9 8 39 39 H 1.09005 * 117.50060 * 359.97438 * 11 9 8 40 40 H 1.09003 * 117.49667 * 359.97438 * 12 8 6 41 41 H 1.09000 * 117.50161 * 145.01834 * 12 8 6 42 42 H 1.09004 * 117.49932 * 214.97551 * 13 8 6 43 43 H 1.08994 * 117.49902 * 359.97438 * 13 8 6 44 44 H 1.09005 * 110.38384 * 201.64594 * 14 5 4 45 45 H 1.08995 * 110.49137 * 79.29279 * 14 5 4 46 46 H 1.00905 * 110.99946 * 328.94775 * 17 15 2 47 47 H 1.09002 * 109.47216 * 299.99450 * 18 17 15 48 48 H 1.09000 * 109.47226 * 59.99785 * 18 17 15 49 49 H 0.97007 * 119.99545 * 359.97438 * 21 19 18 50 50 H 0.97001 * 120.00296 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9082 1.0224 0.0000 4 6 2.0667 -0.7707 -1.2253 5 7 3.2678 -1.4807 -0.7270 6 6 4.4430 -1.6629 -1.3610 7 8 4.5811 -1.2809 -2.5038 8 6 5.5854 -2.3414 -0.6501 9 6 6.8263 -2.6119 -1.5035 10 6 7.1757 -1.5889 -2.5862 11 6 6.6082 -2.9555 -2.9783 12 6 5.2360 -3.3637 0.4332 13 6 5.8036 -1.9978 0.8247 14 6 2.8803 -1.9427 0.6294 15 6 2.0664 -0.7727 1.2229 16 1 2.7096 -0.1306 1.8246 17 7 0.9526 -1.2848 2.0322 18 6 1.3634 -1.4817 3.4287 19 6 0.1973 -2.0058 4.2264 20 8 -0.8713 -2.1962 3.6848 21 7 0.3414 -2.2631 5.5414 22 6 -0.7193 -2.7404 6.2670 23 1 -1.6707 -2.9100 5.7848 24 6 -0.5707 -3.0052 7.6229 25 7 0.5868 -2.7985 8.2097 26 14 -2.0163 -3.6549 8.6116 27 1 -3.1980 -3.7996 7.7239 28 1 -1.6661 -4.9770 9.1899 29 1 -2.3342 -2.7040 9.7070 30 1 -0.3632 -1.0276 0.0129 31 1 -0.3633 0.5249 0.8835 32 1 -0.3633 0.5025 -0.8964 33 1 1.3235 -1.4844 -1.5809 34 1 2.3381 -0.0774 -2.0215 35 1 7.6525 -3.1030 -0.9893 36 1 6.5214 -0.7235 -2.6909 37 1 8.2320 -1.4071 -2.7846 38 1 7.2913 -3.6719 -3.4346 39 1 5.5807 -2.9892 -3.3407 40 1 4.1798 -3.5452 0.6320 41 1 5.8901 -4.2294 0.5381 42 1 6.8310 -1.9650 1.1872 43 1 5.1210 -1.2808 1.2807 44 1 3.7674 -2.1336 1.2333 45 1 2.2648 -2.8400 0.5654 46 1 0.1521 -0.6733 1.9736 47 1 2.1831 -2.1991 3.4686 48 1 1.6921 -0.5308 3.8483 49 1 1.1961 -2.1112 5.9744 50 1 0.6904 -2.9829 9.1564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281413270.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:24 Heat of formation + Delta-G solvation = 19.668984 kcal Electronic energy + Delta-G solvation = -29632.646243 eV Core-core repulsion = 25662.878514 eV Total energy + Delta-G solvation = -3969.767728 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.12159 -39.09675 -38.05934 -37.22123 -35.93981 -34.48936 -33.79153 -32.22849 -31.24073 -29.01744 -27.17670 -26.12827 -25.07820 -23.99860 -23.17662 -22.87599 -22.18373 -21.56415 -19.74506 -19.34130 -19.09061 -17.94782 -16.89150 -16.46351 -16.14147 -15.90455 -15.56358 -15.34584 -14.99492 -14.82053 -14.48445 -14.24648 -13.89154 -13.84449 -13.66954 -13.48044 -12.93046 -12.62069 -12.48769 -12.39328 -12.05601 -11.97314 -11.78220 -11.66339 -11.62583 -11.56686 -11.35226 -11.13248 -11.08940 -11.05266 -10.86006 -10.73212 -10.37525 -10.26464 -10.25426 -9.72076 -9.65542 -9.56165 -8.89866 -8.51376 -8.17489 -8.00700 -6.45993 -3.86825 2.24536 2.68276 3.13343 3.24479 3.31394 3.39001 3.85417 3.96594 3.98813 4.10131 4.15840 4.29434 4.33565 4.41695 4.63365 4.69548 4.74004 4.92926 5.01563 5.05607 5.11130 5.14699 5.18068 5.22602 5.27524 5.37332 5.42548 5.48217 5.54539 5.59184 5.63008 5.64364 5.68466 5.73424 5.75292 5.76988 5.87226 5.89516 5.95921 6.06173 6.11575 6.20983 6.25285 6.28482 7.12569 7.37912 7.51556 7.55552 7.99665 8.02075 8.56358 9.13767 9.49659 10.00589 10.71717 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018085 B = 0.002417 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.881237 B =11581.531253 C =12742.574874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 H 0.079 0.921 4 C 0.115 3.885 5 N -0.620 5.620 6 C 0.572 3.428 7 O -0.536 6.536 8 C -0.122 4.122 9 C -0.115 4.115 10 C -0.169 4.169 11 C -0.168 4.168 12 C -0.169 4.169 13 C -0.158 4.158 14 C 0.080 3.920 15 C 0.074 3.926 16 H 0.056 0.944 17 N -0.661 5.661 18 C 0.047 3.953 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.359 0.641 47 H 0.085 0.915 48 H 0.044 0.956 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.280 3.778 -15.876 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 H 0.098 0.902 4 C -0.007 4.007 5 N -0.354 5.354 6 C 0.362 3.638 7 O -0.413 6.413 8 C -0.125 4.125 9 C -0.134 4.134 10 C -0.206 4.206 11 C -0.205 4.205 12 C -0.206 4.206 13 C -0.195 4.195 14 C -0.042 4.042 15 C -0.038 4.038 16 H 0.074 0.926 17 N -0.299 5.299 18 C -0.086 4.086 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.135 0.865 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.119 0.881 45 H 0.109 0.891 46 H 0.184 0.816 47 H 0.103 0.897 48 H 0.062 0.938 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.866 3.163 -16.883 20.877 hybrid contribution 0.000 0.623 1.370 1.505 sum 11.866 3.786 -15.513 19.895 Atomic orbital electron populations 1.21766 0.93241 1.03847 1.01663 1.22250 0.97209 0.99048 0.94213 0.90218 1.22371 0.86207 0.95659 0.96496 1.48900 1.12694 1.55794 1.18000 1.19073 0.80913 0.78367 0.85477 1.90636 1.81624 1.51708 1.17375 1.20882 0.95496 1.05316 0.90797 1.21377 0.96060 1.05665 0.90290 1.23118 1.00808 0.94797 1.01835 1.22987 1.03060 0.98561 0.95883 1.23640 1.03826 0.93443 0.99656 1.23261 1.03490 0.99095 0.93634 1.23355 0.99974 0.98233 0.82671 1.22418 0.93081 0.94182 0.94094 0.92576 1.60342 1.06678 1.54241 1.08603 1.21771 0.98077 1.00108 0.88637 1.19772 0.89523 0.85149 0.82999 1.90529 1.28406 1.57607 1.70208 1.41873 1.13834 1.57287 1.06957 1.19746 0.92839 1.39439 0.90809 0.87852 1.25263 0.97923 0.97705 0.97049 1.69613 1.23528 1.48895 1.12218 0.85808 0.80949 0.78292 0.79349 1.19202 1.20714 1.20772 0.90270 0.91931 0.92342 0.90607 0.90180 0.87217 0.87072 0.89665 0.89491 0.87889 0.86457 0.87512 0.87388 0.87475 0.88136 0.89122 0.81602 0.89652 0.93754 0.77469 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 7.75 37.16 0.29 -1.17 16 2 C -0.11 -1.06 3.66 -89.22 -0.33 -1.38 16 3 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.12 1.21 6.57 -2.41 -0.02 1.20 16 5 N -0.62 -6.94 3.32 -169.07 -0.56 -7.50 16 6 C 0.57 7.08 7.35 -10.99 -0.08 7.00 16 7 O -0.54 -7.92 12.16 5.56 0.07 -7.85 16 8 C -0.12 -1.23 2.47 -155.66 -0.38 -1.61 16 9 C -0.12 -1.12 5.85 -90.62 -0.53 -1.65 16 10 C -0.17 -1.76 9.66 -26.69 -0.26 -2.02 16 11 C -0.17 -1.76 9.67 -26.69 -0.26 -2.02 16 12 C -0.17 -1.44 9.09 -26.73 -0.24 -1.69 16 13 C -0.16 -1.31 9.11 -26.73 -0.24 -1.55 16 14 C 0.08 0.85 4.40 -2.25 -0.01 0.84 16 15 C 0.07 0.81 3.39 -66.32 -0.22 0.59 16 16 H 0.06 0.59 7.82 -51.93 -0.41 0.19 16 17 N -0.66 -9.36 5.27 -106.52 -0.56 -9.93 16 18 C 0.05 0.74 6.02 -4.98 -0.03 0.71 16 19 C 0.44 9.81 7.82 -10.99 -0.09 9.72 16 20 O -0.58 -15.08 15.78 5.54 0.09 -14.99 16 21 N -0.56 -13.68 5.29 -10.96 -0.06 -13.74 16 22 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 23 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -23.93 13.05 55.50 0.72 -23.21 16 26 Si 0.93 20.60 29.55 -169.99 -5.02 15.57 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 28 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 29 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 30 H 0.08 0.91 7.65 -51.93 -0.40 0.51 16 31 H 0.06 0.64 6.89 -51.93 -0.36 0.29 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 34 H 0.08 0.86 7.91 -51.93 -0.41 0.45 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.11 1.39 6.09 -51.93 -0.32 1.08 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.29 6.47 -51.93 -0.34 0.96 16 40 H 0.12 1.05 4.98 -51.93 -0.26 0.79 16 41 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.11 0.89 6.25 -51.93 -0.32 0.57 16 44 H 0.10 0.94 3.10 -51.93 -0.16 0.78 16 45 H 0.09 1.07 7.88 -51.93 -0.41 0.66 16 46 H 0.36 5.31 5.25 -39.29 -0.21 5.11 16 47 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.04 0.64 8.07 -51.93 -0.42 0.22 16 49 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 50 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -31.10 388.45 -9.74 -40.84 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -7.63 Total: 15.74 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.64 Total: -0.79 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: -0.46 Total: -54.37 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.15 Total: -22.84 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.10 -9.74 -40.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281413270.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.507 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds