Wall clock time and date at job start Tue Mar 31 2020 18:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.80161 * 2 1 4 4 C 1.54943 * 110.74166 * 236.70273 * 2 1 3 5 5 N 1.48118 * 103.25576 * 279.04391 * 4 2 1 6 6 C 1.34780 * 127.03176 * 140.74123 * 5 4 2 7 7 O 1.21273 * 119.99671 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.99729 * 359.95809 * 6 5 4 9 9 H 1.08996 * 110.67941 * 56.76547 * 8 6 5 10 10 C 1.54893 * 110.75182 * 179.97438 * 8 6 5 11 11 C 1.54272 * 104.19709 * 156.25655 * 10 8 6 12 12 H 1.08995 * 117.41504 * 116.36641 * 11 10 8 13 13 C 1.52999 * 118.19683 * 271.00184 * 11 10 8 14 14 C 1.53875 * 106.59711 * 336.38944 * 11 10 8 15 15 H 1.09004 * 121.33427 * 138.62684 * 14 11 10 16 16 C 1.54272 * 106.59823 * 0.02562 * 14 11 10 17 17 C 1.47486 * 105.93242 * 320.70547 * 5 4 2 18 18 C 1.53999 * 107.08396 * 25.44735 * 17 5 4 19 19 H 1.08993 * 110.33194 * 239.69901 * 18 17 5 20 20 N 1.46901 * 110.32740 * 117.58631 * 18 17 5 21 21 C 1.46902 * 110.99983 * 86.45089 * 20 18 17 22 22 C 1.50696 * 109.46978 * 180.02562 * 21 20 18 23 23 O 1.21295 * 120.00238 * 359.97438 * 22 21 20 24 24 N 1.34777 * 120.00076 * 180.02562 * 22 21 20 25 25 C 1.37105 * 120.00244 * 180.02562 * 24 22 21 26 26 H 1.07998 * 119.99708 * 359.97438 * 25 24 22 27 27 C 1.38945 * 120.00017 * 179.97438 * 25 24 22 28 28 N 1.31413 * 119.99901 * 359.71836 * 27 25 24 29 29 Si 1.86800 * 120.00194 * 179.97438 * 27 25 24 30 30 H 1.48501 * 109.47364 * 179.72210 * 29 27 25 31 31 H 1.48508 * 109.46883 * 299.72333 * 29 27 25 32 32 H 1.48497 * 109.46870 * 59.72143 * 29 27 25 33 33 H 1.09004 * 109.47469 * 296.71356 * 1 2 3 34 34 H 1.09000 * 109.47057 * 56.71236 * 1 2 3 35 35 H 1.08997 * 109.47330 * 176.71503 * 1 2 3 36 36 H 1.09004 * 110.65984 * 160.59662 * 4 2 1 37 37 H 1.09001 * 110.65734 * 37.48889 * 4 2 1 38 38 H 1.08999 * 110.48565 * 274.93205 * 10 8 6 39 39 H 1.08998 * 110.48579 * 37.57981 * 10 8 6 40 40 H 1.09001 * 117.46304 * 201.20928 * 13 11 10 41 41 H 1.09001 * 117.46181 * 346.03427 * 13 11 10 42 42 H 1.09006 * 110.48612 * 264.93353 * 16 14 11 43 43 H 1.08999 * 110.48738 * 142.28907 * 16 14 11 44 44 H 1.08998 * 109.90640 * 266.08772 * 17 5 4 45 45 H 1.08998 * 110.07157 * 144.89921 * 17 5 4 46 46 H 1.00903 * 110.99970 * 210.41063 * 20 18 17 47 47 H 1.08999 * 109.46697 * 60.00741 * 21 20 18 48 48 H 1.08993 * 109.47253 * 300.00391 * 21 20 18 49 49 H 0.97004 * 119.99652 * 359.97438 * 24 22 21 50 50 H 0.97000 * 120.00371 * 0.28325 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 6 2.0787 -0.7955 -1.2111 5 7 1.9871 -2.2040 -0.7621 6 6 1.6233 -3.2699 -1.5023 7 8 1.5925 -4.3739 -1.0013 8 6 1.2544 -3.0897 -2.9523 9 1 2.0695 -2.6182 -3.5011 10 6 0.8739 -4.4469 -3.5945 11 6 -0.0248 -4.0621 -4.7879 12 1 0.3359 -4.3063 -5.7870 13 6 -1.5299 -3.9306 -4.5466 14 6 -0.6136 -2.6773 -4.4661 15 1 -0.6950 -1.9044 -5.2305 16 6 -0.0516 -2.2687 -3.0887 17 6 2.3762 -2.2014 0.6606 18 6 2.0775 -0.7937 1.2088 19 1 2.9905 -0.3321 1.5846 20 7 1.0672 -0.8642 2.2728 21 6 1.6925 -1.1261 3.5761 22 6 0.6274 -1.1920 4.6401 23 8 -0.5380 -1.0357 4.3422 24 7 0.9698 -1.4236 5.9229 25 6 0.0007 -1.4842 6.8909 26 1 -1.0370 -1.3459 6.6255 27 6 0.3537 -1.7235 8.2133 28 7 1.6158 -1.8973 8.5353 29 14 -0.9665 -1.8053 9.5323 30 1 -0.3350 -2.0767 10.8487 31 1 -1.6910 -0.5101 9.5884 32 1 -1.9231 -2.8939 9.2083 33 1 -0.3634 0.4620 0.9180 34 1 -0.3633 0.5640 -0.8591 35 1 -0.3634 -1.0259 -0.0589 36 1 3.1146 -0.5227 -1.4130 37 1 1.4581 -0.6314 -2.0920 38 1 1.7661 -4.9682 -3.9414 39 1 0.3223 -5.0635 -2.8848 40 1 -2.1869 -4.0123 -5.4125 41 1 -1.9270 -4.3357 -3.6158 42 1 -0.7524 -2.5336 -2.2969 43 1 0.1647 -1.2006 -3.0665 44 1 3.4402 -2.4185 0.7547 45 1 1.7960 -2.9440 1.2084 46 1 0.5121 -0.0220 2.3007 47 1 2.3921 -0.3239 3.8111 48 1 2.2272 -2.0751 3.5384 49 1 1.9018 -1.5483 6.1612 50 1 2.3015 -1.8545 7.8505 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281430263.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:49 Heat of formation + Delta-G solvation = -34.064608 kcal Electronic energy + Delta-G solvation = -29414.883113 eV Core-core repulsion = 25442.785321 eV Total energy + Delta-G solvation = -3972.097792 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.82797 -39.42183 -38.37470 -37.73092 -34.90146 -34.08416 -32.32606 -32.06541 -31.04775 -29.13705 -28.41202 -27.00925 -26.11799 -24.47390 -23.68871 -22.38174 -21.03403 -20.17082 -19.74449 -19.66114 -19.14148 -17.90062 -17.41020 -16.79593 -16.63235 -16.14741 -15.65687 -15.19788 -14.98406 -14.56408 -14.29657 -14.04735 -13.83579 -13.68716 -13.64606 -13.42697 -13.29068 -12.93838 -12.72403 -12.32730 -12.24553 -11.98725 -11.83148 -11.81955 -11.66037 -11.43808 -11.38355 -11.20869 -11.13222 -11.00152 -10.92422 -10.83842 -10.31518 -10.19819 -10.09630 -9.85903 -9.76491 -9.54002 -8.83437 -8.51645 -8.17464 -8.02519 -6.74626 -3.87759 2.50420 2.76870 3.25708 3.31811 3.35767 3.56086 3.84449 3.98047 4.03596 4.22436 4.28435 4.31246 4.37906 4.44502 4.71204 4.77122 4.80762 4.84255 4.96826 5.02444 5.03998 5.12479 5.14562 5.19863 5.21835 5.28385 5.35138 5.40218 5.48936 5.50636 5.59710 5.62127 5.70107 5.74538 5.77664 5.82195 5.83855 5.89546 5.95089 5.97625 6.00960 6.05937 6.18160 6.34618 7.09522 7.41535 7.54485 7.81323 8.06750 8.08730 8.60684 8.80406 9.48196 9.88097 10.68809 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019177 B = 0.002204 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.754682 B =12700.168574 C =12997.932605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.088 0.912 4 C 0.099 3.901 5 N -0.613 5.613 6 C 0.539 3.461 7 O -0.536 6.536 8 C -0.108 4.108 9 H 0.100 0.900 10 C -0.078 4.078 11 C -0.163 4.163 12 H 0.110 0.890 13 C -0.154 4.154 14 C -0.168 4.168 15 H 0.113 0.887 16 C -0.084 4.084 17 C 0.112 3.888 18 C 0.076 3.924 19 H 0.059 0.941 20 N -0.657 5.657 21 C 0.047 3.953 22 C 0.444 3.556 23 O -0.576 6.576 24 N -0.576 5.576 25 C -0.382 4.382 26 H 0.099 0.901 27 C -0.010 4.010 28 N -0.901 5.901 29 Si 1.091 2.909 30 H -0.279 1.279 31 H -0.284 1.284 32 H -0.284 1.284 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.354 0.646 47 H 0.044 0.956 48 H 0.085 0.915 49 H 0.375 0.625 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 3.495 -27.192 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 H 0.106 0.894 4 C -0.024 4.024 5 N -0.347 5.347 6 C 0.327 3.673 7 O -0.413 6.413 8 C -0.129 4.129 9 H 0.119 0.881 10 C -0.116 4.116 11 C -0.181 4.181 12 H 0.128 0.872 13 C -0.191 4.191 14 C -0.186 4.186 15 H 0.131 0.869 16 C -0.122 4.122 17 C -0.011 4.011 18 C -0.036 4.036 19 H 0.077 0.923 20 N -0.292 5.292 21 C -0.085 4.085 22 C 0.229 3.771 23 O -0.460 6.460 24 N -0.214 5.214 25 C -0.511 4.511 26 H 0.117 0.883 27 C -0.212 4.212 28 N -0.540 5.540 29 Si 0.917 3.083 30 H -0.204 1.204 31 H -0.210 1.210 32 H -0.210 1.210 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.177 0.823 47 H 0.062 0.938 48 H 0.103 0.897 49 H 0.208 0.792 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.122 2.024 -25.616 25.784 hybrid contribution 1.471 1.113 -1.363 2.294 sum 3.593 3.137 -26.979 27.397 Atomic orbital electron populations 1.21639 0.93086 1.03052 1.01642 1.22447 0.97769 0.98629 0.93809 0.89399 1.22743 1.01031 0.80740 0.97892 1.48663 1.67158 1.07345 1.11574 1.20117 0.76295 0.83053 0.87814 1.90725 1.52983 1.24345 1.73219 1.22434 0.99430 0.98694 0.92341 0.88145 1.21815 0.99196 0.95238 0.95364 1.23263 0.94589 1.00671 0.99605 0.87225 1.23468 0.92268 0.99976 1.03337 1.23587 1.05430 0.91136 0.98485 0.86888 1.21968 0.94765 0.99377 0.96078 1.22119 0.99471 0.98346 0.81204 1.22451 0.94357 0.94623 0.92119 0.92280 1.60302 1.22161 1.44532 1.02244 1.21758 0.95894 1.01348 0.89526 1.19698 0.89684 0.84591 0.83096 1.90529 1.19499 1.54773 1.81185 1.41940 1.09219 1.63760 1.06449 1.20525 0.91339 1.50278 0.88938 0.88349 1.26515 1.01241 0.95342 0.98131 1.70902 1.00014 1.46749 1.36352 0.83132 0.73296 0.77037 0.74804 1.20414 1.21034 1.20975 0.91483 0.92963 0.91582 0.90869 0.89500 0.90803 0.89824 0.88330 0.88650 0.90569 0.90311 0.91909 0.89060 0.82255 0.93820 0.89672 0.79156 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.48 37.16 0.32 -1.08 16 2 C -0.11 -0.94 3.57 -88.74 -0.32 -1.26 16 3 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.10 0.76 6.30 -2.13 -0.01 0.75 16 5 N -0.61 -6.92 3.19 -169.76 -0.54 -7.46 16 6 C 0.54 6.89 7.22 -10.98 -0.08 6.81 16 7 O -0.54 -9.24 16.07 5.56 0.09 -9.15 16 8 C -0.11 -0.98 2.61 -89.79 -0.23 -1.21 16 9 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 10 C -0.08 -0.74 5.70 -25.07 -0.14 -0.88 16 11 C -0.16 -1.24 6.85 -89.50 -0.61 -1.85 16 12 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 13 C -0.15 -1.16 10.21 -25.42 -0.26 -1.42 16 14 C -0.17 -1.21 7.04 -88.19 -0.62 -1.83 16 15 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 16 C -0.08 -0.68 5.52 -25.08 -0.14 -0.82 16 17 C 0.11 1.42 6.66 -2.98 -0.02 1.40 16 18 C 0.08 0.87 3.19 -66.34 -0.21 0.65 16 19 H 0.06 0.61 7.86 -51.93 -0.41 0.20 16 20 N -0.66 -10.12 5.13 -106.54 -0.55 -10.67 16 21 C 0.05 0.82 6.00 -4.98 -0.03 0.79 16 22 C 0.44 10.50 7.82 -10.99 -0.09 10.41 16 23 O -0.58 -15.78 15.78 5.54 0.09 -15.69 16 24 N -0.58 -14.60 5.28 -10.96 -0.06 -14.66 16 25 C -0.38 -10.84 9.68 -14.93 -0.14 -10.98 16 26 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 27 C -0.01 -0.27 5.50 -17.47 -0.10 -0.37 16 28 N -0.90 -25.46 13.68 55.50 0.76 -24.70 16 29 Si 1.09 24.54 29.92 -169.99 -5.09 19.45 16 30 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 31 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 32 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 33 H 0.07 0.78 6.25 -51.93 -0.32 0.46 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.83 8.07 -51.93 -0.42 0.42 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.53 4.93 -51.93 -0.26 0.28 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.98 7.43 -51.93 -0.39 0.59 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.76 8.04 -51.93 -0.42 0.35 16 43 H 0.08 0.50 6.08 -51.93 -0.32 0.19 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 1.49 7.84 -51.93 -0.41 1.08 16 46 H 0.35 5.57 6.09 -39.29 -0.24 5.33 16 47 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 48 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 49 H 0.38 8.79 6.73 -40.82 -0.27 8.51 16 50 H 0.26 7.08 6.78 -40.82 -0.28 6.81 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -34.99 393.58 -10.02 -45.00 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -7.96 Total: 12.82 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -2.69 Total: -0.88 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.39 Total: -57.49 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.18 Total: -24.84 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -5.09 Total: 19.45 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.99 -10.02 -45.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281430263.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.940 kcal (2) G-P(sol) polarization free energy of solvation -34.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds