Wall clock time and date at job start Tue Mar 31 2020 18:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.64104 * 2 1 4 4 C 1.54316 * 110.72303 * 123.14287 * 2 1 3 5 5 N 1.47023 * 107.27583 * 140.73336 * 4 2 1 6 6 C 1.34775 * 125.65352 * 181.01950 * 5 4 2 7 7 O 1.21278 * 120.00336 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.99688 * 0.03338 * 6 5 4 9 9 H 1.08997 * 110.67768 * 56.76185 * 8 6 5 10 10 C 1.54890 * 110.75747 * 179.97438 * 8 6 5 11 11 C 1.54264 * 104.20099 * 156.25277 * 10 8 6 12 12 H 1.09004 * 117.76144 * 116.74539 * 11 10 8 13 13 C 1.52995 * 118.20044 * 272.21819 * 11 10 8 14 14 C 1.52996 * 60.38183 * 93.61242 * 13 11 10 15 15 H 1.09002 * 119.29835 * 111.30710 * 14 13 11 16 16 C 1.54266 * 118.19635 * 265.45038 * 14 13 11 17 17 C 1.47428 * 108.70107 * 1.29240 * 5 4 2 18 18 C 1.55137 * 104.71850 * 335.54873 * 17 5 4 19 19 H 1.09000 * 110.89987 * 155.27575 * 18 17 5 20 20 N 1.46898 * 111.19304 * 279.19007 * 18 17 5 21 21 C 1.46894 * 111.00067 * 267.18909 * 20 18 17 22 22 C 1.50707 * 109.47143 * 180.02562 * 21 20 18 23 23 O 1.21296 * 119.99796 * 359.97438 * 22 21 20 24 24 N 1.34770 * 120.00339 * 180.02562 * 22 21 20 25 25 C 1.37095 * 120.00379 * 180.02562 * 24 22 21 26 26 H 1.08003 * 119.99884 * 359.97438 * 25 24 22 27 27 C 1.38947 * 120.00146 * 180.02562 * 25 24 22 28 28 N 1.31405 * 120.00071 * 359.97438 * 27 25 24 29 29 Si 1.86801 * 119.99973 * 179.97438 * 27 25 24 30 30 H 1.48501 * 109.47307 * 89.99861 * 29 27 25 31 31 H 1.48495 * 109.47350 * 209.99884 * 29 27 25 32 32 H 1.48502 * 109.47105 * 330.00229 * 29 27 25 33 33 H 1.08993 * 109.47409 * 298.30896 * 1 2 3 34 34 H 1.09005 * 109.47193 * 58.31078 * 1 2 3 35 35 H 1.09001 * 109.46664 * 178.30628 * 1 2 3 36 36 H 1.09006 * 109.88571 * 21.31886 * 4 2 1 37 37 H 1.09007 * 110.01324 * 260.22775 * 4 2 1 38 38 H 1.09005 * 110.48327 * 37.57563 * 10 8 6 39 39 H 1.09001 * 110.48920 * 274.93717 * 10 8 6 40 40 H 1.09006 * 117.45968 * 346.00979 * 13 11 10 41 41 H 1.09000 * 117.44256 * 201.21915 * 13 11 10 42 42 H 1.09002 * 110.48765 * 207.67780 * 16 14 13 43 43 H 1.09005 * 110.48690 * 330.31828 * 16 14 13 44 44 H 1.08998 * 110.36983 * 94.47578 * 17 5 4 45 45 H 1.09002 * 110.36503 * 216.80596 * 17 5 4 46 46 H 1.00896 * 110.99842 * 31.14984 * 20 18 17 47 47 H 1.09000 * 109.47405 * 300.00062 * 21 20 18 48 48 H 1.08996 * 109.47409 * 60.00071 * 21 20 18 49 49 H 0.97008 * 119.99756 * 0.02562 * 24 22 21 50 50 H 0.97007 * 120.00103 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2085 5 7 3.2471 -1.5461 0.7426 6 6 3.9958 -2.3766 1.4950 7 8 4.9440 -2.9512 1.0035 8 6 3.6546 -2.5914 2.9470 9 1 2.6295 -2.9462 3.0531 10 6 4.6483 -3.5816 3.6038 11 6 4.5846 -3.2405 5.1069 12 1 4.2187 -4.0098 5.7870 13 6 5.5156 -2.1502 5.6410 14 6 4.0946 -1.7853 5.2070 15 1 3.3678 -1.4825 5.9609 16 6 3.8811 -1.2720 3.7680 17 6 3.4708 -1.2411 -0.6824 18 6 2.0828 -0.7948 -1.2125 19 1 2.1887 -0.1514 -2.0859 20 7 1.2320 -1.9535 -1.5147 21 6 1.3606 -2.3478 -2.9239 22 6 0.4749 -3.5364 -3.1959 23 8 -0.1970 -4.0088 -2.3033 24 7 0.4301 -4.0750 -4.4304 25 6 -0.3760 -5.1560 -4.6780 26 1 -0.9749 -5.5761 -3.8835 27 6 -0.4217 -5.7116 -5.9507 28 7 0.3074 -5.2007 -6.9172 29 14 -1.5196 -7.1849 -6.2877 30 1 -2.8618 -6.7146 -6.7150 31 1 -0.9196 -8.0134 -7.3641 32 1 -1.6503 -7.9978 -5.0519 33 1 -0.3634 0.4873 0.9047 34 1 -0.3634 0.5399 -0.8745 35 1 -0.3633 -1.0273 -0.0304 36 1 1.3141 -1.4755 1.5781 37 1 2.3706 -0.1011 2.0010 38 1 5.6557 -3.4226 3.2189 39 1 4.3314 -4.6103 3.4322 40 1 6.3354 -1.8300 4.9980 41 1 5.7299 -2.1519 6.7097 42 1 3.0114 -0.6165 3.7219 43 1 4.7708 -0.7524 3.4124 44 1 4.1970 -0.4353 -0.7884 45 1 3.8103 -2.1313 -1.2120 46 1 1.4433 -2.7268 -0.9021 47 1 1.0598 -1.5173 -3.5625 48 1 2.3972 -2.6110 -3.1344 49 1 0.9684 -3.6979 -5.1440 50 1 0.2752 -5.5884 -7.8059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281430264.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:52 Heat of formation + Delta-G solvation = -44.658236 kcal Electronic energy + Delta-G solvation = -29385.436309 eV Core-core repulsion = 25412.879143 eV Total energy + Delta-G solvation = -3972.557166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79233 -39.43371 -38.25976 -37.65870 -34.53135 -33.77151 -32.50129 -32.06363 -31.20585 -29.18591 -28.45298 -26.51495 -26.27445 -24.46197 -23.75592 -22.30179 -21.03476 -20.14727 -19.87880 -19.38505 -19.04610 -17.91376 -17.20552 -16.63932 -16.55738 -16.08462 -15.50508 -14.95868 -14.90655 -14.57984 -14.10823 -14.00106 -13.68396 -13.61646 -13.52518 -13.45381 -13.29761 -12.77546 -12.71267 -12.39721 -12.19342 -12.01022 -11.80653 -11.70285 -11.65843 -11.52908 -11.42415 -11.34223 -11.19918 -11.02992 -10.85985 -10.71746 -10.39234 -10.37224 -10.21583 -10.11216 -9.73013 -9.50861 -8.85045 -8.45464 -8.06293 -7.95816 -6.41493 -3.82274 2.50015 2.81660 3.18175 3.26823 3.29429 3.32743 3.90529 4.00344 4.05468 4.25261 4.31208 4.36326 4.43608 4.48409 4.74330 4.79324 4.86727 4.88614 5.03175 5.10043 5.14002 5.14876 5.23944 5.26692 5.28556 5.34785 5.40246 5.45307 5.48513 5.55059 5.62671 5.65874 5.73956 5.79548 5.84057 5.86977 5.89301 5.92837 6.01694 6.06014 6.10832 6.16316 6.27226 6.59547 7.16173 7.38817 7.55403 7.57733 8.05831 8.06327 8.61081 9.17980 9.54267 10.05468 10.76211 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.002377 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.248002 B =11774.317200 C =12605.421223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.091 4.091 3 H 0.083 0.917 4 C 0.101 3.899 5 N -0.614 5.614 6 C 0.535 3.465 7 O -0.540 6.540 8 C -0.109 4.109 9 H 0.105 0.895 10 C -0.077 4.077 11 C -0.163 4.163 12 H 0.112 0.888 13 C -0.154 4.154 14 C -0.169 4.169 15 H 0.112 0.888 16 C -0.082 4.082 17 C 0.073 3.927 18 C 0.077 3.923 19 H 0.099 0.901 20 N -0.649 5.649 21 C 0.049 3.951 22 C 0.441 3.559 23 O -0.584 6.584 24 N -0.563 5.563 25 C -0.299 4.299 26 H 0.103 0.897 27 C 0.022 3.978 28 N -0.901 5.901 29 Si 0.930 3.070 30 H -0.278 1.278 31 H -0.284 1.284 32 H -0.270 1.270 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.352 0.648 47 H 0.088 0.912 48 H 0.044 0.956 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.902 13.311 20.143 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.111 4.111 3 H 0.101 0.899 4 C -0.022 4.022 5 N -0.349 5.349 6 C 0.324 3.676 7 O -0.417 6.417 8 C -0.130 4.130 9 H 0.123 0.877 10 C -0.115 4.115 11 C -0.181 4.181 12 H 0.130 0.870 13 C -0.191 4.191 14 C -0.187 4.187 15 H 0.130 0.870 16 C -0.120 4.120 17 C -0.051 4.051 18 C -0.035 4.035 19 H 0.117 0.883 20 N -0.280 5.280 21 C -0.084 4.084 22 C 0.226 3.774 23 O -0.468 6.468 24 N -0.200 5.200 25 C -0.428 4.428 26 H 0.121 0.879 27 C -0.180 4.180 28 N -0.543 5.543 29 Si 0.757 3.243 30 H -0.204 1.204 31 H -0.209 1.209 32 H -0.194 1.194 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.172 0.828 47 H 0.106 0.894 48 H 0.062 0.938 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.438 12.911 20.201 25.102 hybrid contribution 0.658 -0.863 -0.739 1.313 sum 8.096 12.048 19.462 24.279 Atomic orbital electron populations 1.21568 0.92528 1.04080 1.00625 1.22248 0.97829 0.97974 0.93044 0.89867 1.22293 0.87467 0.94969 0.97461 1.48450 1.30188 1.44998 1.11228 1.20196 0.81739 0.77713 0.87930 1.90711 1.28866 1.48207 1.73910 1.22840 1.02085 0.97335 0.90740 0.87702 1.21779 0.99803 0.98671 0.91266 1.23262 1.05391 0.92075 0.97382 0.86961 1.23081 0.93069 1.01730 1.01232 1.23188 0.98293 0.99149 0.98033 0.87006 1.22297 1.02280 0.95315 0.92078 1.23076 0.98871 1.01361 0.81805 1.22883 0.88791 0.94004 0.97869 0.88280 1.60092 1.54612 1.09327 1.04005 1.21740 0.98106 0.98320 0.90231 1.19770 0.87004 0.86588 0.83989 1.90522 1.47068 1.64455 1.44752 1.41859 1.40305 1.28744 1.09065 1.19691 1.20732 1.06251 0.96160 0.87947 1.25264 0.98015 0.99434 0.95260 1.69611 1.40298 1.41939 1.02430 0.85856 0.79548 0.80683 0.78192 1.20384 1.20933 1.19435 0.93666 0.92387 0.90130 0.90772 0.91421 0.90028 0.90538 0.88952 0.88382 0.90126 0.91100 0.91145 0.90356 0.82772 0.89397 0.93808 0.77460 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 8.82 37.15 0.33 -0.98 16 2 C -0.09 -0.83 3.45 -88.79 -0.31 -1.14 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 4 C 0.10 0.91 5.73 -3.07 -0.02 0.89 16 5 N -0.61 -7.09 3.26 -170.37 -0.56 -7.65 16 6 C 0.54 7.05 7.20 -10.99 -0.08 6.97 16 7 O -0.54 -9.25 15.98 5.56 0.09 -9.16 16 8 C -0.11 -1.08 2.71 -88.58 -0.24 -1.32 16 9 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 10 C -0.08 -0.79 5.71 -25.07 -0.14 -0.93 16 11 C -0.16 -1.32 6.94 -89.50 -0.62 -1.94 16 12 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 13 C -0.15 -1.11 10.07 -26.74 -0.27 -1.38 16 14 C -0.17 -1.23 6.88 -89.50 -0.62 -1.84 16 15 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 16 C -0.08 -0.64 5.51 -23.88 -0.13 -0.77 16 17 C 0.07 0.86 6.35 -2.40 -0.02 0.85 16 18 C 0.08 0.85 3.14 -65.44 -0.21 0.65 16 19 H 0.10 0.99 7.83 -51.93 -0.41 0.59 16 20 N -0.65 -9.82 4.57 -105.60 -0.48 -10.30 16 21 C 0.05 0.83 6.03 -4.98 -0.03 0.80 16 22 C 0.44 10.34 7.82 -10.99 -0.09 10.26 16 23 O -0.58 -15.74 15.78 5.54 0.09 -15.65 16 24 N -0.56 -14.31 5.29 -10.96 -0.06 -14.36 16 25 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 26 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 27 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 28 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 29 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 30 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 31 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 32 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 33 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.04 7.22 -51.93 -0.38 0.66 16 36 H 0.07 0.70 7.82 -51.93 -0.41 0.29 16 37 H 0.07 0.48 6.23 -51.93 -0.32 0.16 16 38 H 0.08 0.96 7.44 -51.93 -0.39 0.57 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.08 0.51 6.53 -51.93 -0.34 0.18 16 43 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.11 8.03 -51.93 -0.42 0.69 16 46 H 0.35 6.00 8.10 -39.29 -0.32 5.68 16 47 H 0.09 1.35 8.09 -51.93 -0.42 0.93 16 48 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 50 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 398.59 15.07 6.01 6.01 Total: -1.00 -32.76 398.59 -10.18 -42.94 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -8.29 Total: 13.86 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.67 Total: 2.07 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.37 Total: -56.25 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.18 Total: -24.82 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.76 -10.18 -42.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281430264.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.721 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds