Wall clock time and date at job start Tue Mar 31 2020 18:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 110.64104 * 2 1 4 4 C 1.54316 * 110.72303 * 123.14287 * 2 1 3 5 5 N 1.47023 * 107.27583 * 140.73336 * 4 2 1 6 6 C 1.34775 * 125.65352 * 181.01950 * 5 4 2 7 7 O 1.21278 * 120.00336 * 180.02562 * 6 5 4 8 8 C 1.50699 * 119.99688 * 0.03338 * 6 5 4 9 9 H 1.08997 * 110.67768 * 56.76185 * 8 6 5 10 10 C 1.54890 * 110.75747 * 179.97438 * 8 6 5 11 11 C 1.54264 * 104.20099 * 156.25277 * 10 8 6 12 12 H 1.09004 * 117.76144 * 116.74539 * 11 10 8 13 13 C 1.52995 * 118.20044 * 272.21819 * 11 10 8 14 14 C 1.52996 * 60.38183 * 93.61242 * 13 11 10 15 15 H 1.09002 * 119.29835 * 111.30710 * 14 13 11 16 16 C 1.54266 * 118.19635 * 265.45038 * 14 13 11 17 17 C 1.47428 * 108.70107 * 1.29240 * 5 4 2 18 18 C 1.55137 * 104.71850 * 335.54873 * 17 5 4 19 19 H 1.09000 * 110.89987 * 155.27575 * 18 17 5 20 20 N 1.46898 * 111.19304 * 279.19007 * 18 17 5 21 21 C 1.46894 * 111.00067 * 267.18909 * 20 18 17 22 22 C 1.50707 * 109.47143 * 180.02562 * 21 20 18 23 23 O 1.21296 * 119.99796 * 359.97438 * 22 21 20 24 24 N 1.34770 * 120.00339 * 180.02562 * 22 21 20 25 25 C 1.37095 * 120.00379 * 180.02562 * 24 22 21 26 26 H 1.08003 * 119.99884 * 359.97438 * 25 24 22 27 27 C 1.38947 * 120.00146 * 180.02562 * 25 24 22 28 28 N 1.31405 * 120.00071 * 359.97438 * 27 25 24 29 29 Si 1.86801 * 119.99973 * 179.97438 * 27 25 24 30 30 H 1.48501 * 109.47307 * 89.99861 * 29 27 25 31 31 H 1.48495 * 109.47350 * 209.99884 * 29 27 25 32 32 H 1.48502 * 109.47105 * 330.00229 * 29 27 25 33 33 H 1.08993 * 109.47409 * 298.30896 * 1 2 3 34 34 H 1.09005 * 109.47193 * 58.31078 * 1 2 3 35 35 H 1.09001 * 109.46664 * 178.30628 * 1 2 3 36 36 H 1.09006 * 109.88571 * 21.31886 * 4 2 1 37 37 H 1.09007 * 110.01324 * 260.22775 * 4 2 1 38 38 H 1.09005 * 110.48327 * 37.57563 * 10 8 6 39 39 H 1.09001 * 110.48920 * 274.93717 * 10 8 6 40 40 H 1.09006 * 117.45968 * 346.00979 * 13 11 10 41 41 H 1.09000 * 117.44256 * 201.21915 * 13 11 10 42 42 H 1.09002 * 110.48765 * 207.67780 * 16 14 13 43 43 H 1.09005 * 110.48690 * 330.31828 * 16 14 13 44 44 H 1.08998 * 110.36983 * 94.47578 * 17 5 4 45 45 H 1.09002 * 110.36503 * 216.80596 * 17 5 4 46 46 H 1.00896 * 110.99842 * 31.14984 * 20 18 17 47 47 H 1.09000 * 109.47405 * 300.00062 * 21 20 18 48 48 H 1.08996 * 109.47409 * 60.00071 * 21 20 18 49 49 H 0.97008 * 119.99756 * 0.02562 * 24 22 21 50 50 H 0.97007 * 120.00103 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2085 5 7 3.2471 -1.5461 0.7426 6 6 3.9958 -2.3766 1.4950 7 8 4.9440 -2.9512 1.0035 8 6 3.6546 -2.5914 2.9470 9 1 2.6295 -2.9462 3.0531 10 6 4.6483 -3.5816 3.6038 11 6 4.5846 -3.2405 5.1069 12 1 4.2187 -4.0098 5.7870 13 6 5.5156 -2.1502 5.6410 14 6 4.0946 -1.7853 5.2070 15 1 3.3678 -1.4825 5.9609 16 6 3.8811 -1.2720 3.7680 17 6 3.4708 -1.2411 -0.6824 18 6 2.0828 -0.7948 -1.2125 19 1 2.1887 -0.1514 -2.0859 20 7 1.2320 -1.9535 -1.5147 21 6 1.3606 -2.3478 -2.9239 22 6 0.4749 -3.5364 -3.1959 23 8 -0.1970 -4.0088 -2.3033 24 7 0.4301 -4.0750 -4.4304 25 6 -0.3760 -5.1560 -4.6780 26 1 -0.9749 -5.5761 -3.8835 27 6 -0.4217 -5.7116 -5.9507 28 7 0.3074 -5.2007 -6.9172 29 14 -1.5196 -7.1849 -6.2877 30 1 -2.8618 -6.7146 -6.7150 31 1 -0.9196 -8.0134 -7.3641 32 1 -1.6503 -7.9978 -5.0519 33 1 -0.3634 0.4873 0.9047 34 1 -0.3634 0.5399 -0.8745 35 1 -0.3633 -1.0273 -0.0304 36 1 1.3141 -1.4755 1.5781 37 1 2.3706 -0.1011 2.0010 38 1 5.6557 -3.4226 3.2189 39 1 4.3314 -4.6103 3.4322 40 1 6.3354 -1.8300 4.9980 41 1 5.7299 -2.1519 6.7097 42 1 3.0114 -0.6165 3.7219 43 1 4.7708 -0.7524 3.4124 44 1 4.1970 -0.4353 -0.7884 45 1 3.8103 -2.1313 -1.2120 46 1 1.4433 -2.7268 -0.9021 47 1 1.0598 -1.5173 -3.5625 48 1 2.3972 -2.6110 -3.1344 49 1 0.9684 -3.6979 -5.1440 50 1 0.2752 -5.5884 -7.8059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281430264.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:51 Heat of formation + Delta-G solvation = -66.434571 kcal Electronic energy + Delta-G solvation = -29386.380602 eV Core-core repulsion = 25412.879143 eV Total energy + Delta-G solvation = -3973.501459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.68749 -40.40185 -39.83308 -38.77659 -36.14087 -35.39478 -33.51870 -33.21280 -32.81561 -30.21324 -29.19741 -27.92931 -27.27173 -25.91610 -24.90679 -23.11541 -21.71405 -21.20964 -20.86277 -20.65126 -20.05032 -19.89845 -18.16384 -17.76810 -17.53453 -17.22189 -16.87881 -16.46589 -16.05301 -16.02761 -15.65441 -15.32508 -14.89521 -14.54374 -14.48221 -14.25575 -14.18667 -13.98707 -13.72167 -13.53941 -13.52607 -13.28039 -13.21766 -12.89162 -12.81468 -12.56278 -12.44028 -12.36575 -12.19457 -12.14489 -12.07256 -11.98013 -11.67152 -11.54986 -11.52290 -10.98917 -10.93225 -10.54005 -10.36474 -10.03505 -9.81537 -9.26470 -8.48459 -5.97233 1.36359 1.39927 1.50912 1.52763 1.92519 2.03509 2.27308 2.66824 2.86400 3.18661 3.25424 3.45479 3.52088 3.64466 3.66559 3.79341 4.01339 4.04584 4.16757 4.20523 4.26924 4.30374 4.36801 4.38136 4.46252 4.48291 4.54109 4.59876 4.61467 4.67571 4.70028 4.73610 4.84009 4.90313 4.99968 5.00646 5.07602 5.12728 5.24434 5.26545 5.30314 5.33524 5.39016 5.40801 5.74933 5.87985 6.08296 6.26863 6.45861 6.57974 7.06690 7.10686 7.54221 8.09430 8.68934 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016086 B = 0.002377 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.248002 B =11774.317200 C =12605.421223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.081 4.081 3 H 0.116 0.884 4 C 0.098 3.902 5 N -0.613 5.613 6 C 0.527 3.473 7 O -0.592 6.592 8 C -0.106 4.106 9 H 0.114 0.886 10 C -0.081 4.081 11 C -0.173 4.173 12 H 0.123 0.877 13 C -0.153 4.153 14 C -0.159 4.159 15 H 0.133 0.867 16 C -0.075 4.075 17 C 0.073 3.927 18 C 0.076 3.924 19 H 0.119 0.881 20 N -0.654 5.654 21 C 0.063 3.937 22 C 0.437 3.563 23 O -0.623 6.623 24 N -0.574 5.574 25 C -0.333 4.333 26 H 0.078 0.922 27 C -0.014 4.014 28 N -0.920 5.920 29 Si 0.993 3.007 30 H -0.269 1.269 31 H -0.271 1.271 32 H -0.274 1.274 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.090 0.910 45 H 0.047 0.953 46 H 0.338 0.662 47 H 0.114 0.886 48 H 0.057 0.943 49 H 0.396 0.604 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.410 15.542 21.343 27.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.100 4.100 3 H 0.134 0.866 4 C -0.023 4.023 5 N -0.346 5.346 6 C 0.317 3.683 7 O -0.473 6.473 8 C -0.127 4.127 9 H 0.132 0.868 10 C -0.119 4.119 11 C -0.191 4.191 12 H 0.141 0.859 13 C -0.189 4.189 14 C -0.177 4.177 15 H 0.150 0.850 16 C -0.113 4.113 17 C -0.051 4.051 18 C -0.035 4.035 19 H 0.137 0.863 20 N -0.284 5.284 21 C -0.069 4.069 22 C 0.225 3.775 23 O -0.509 6.509 24 N -0.211 5.211 25 C -0.463 4.463 26 H 0.096 0.904 27 C -0.214 4.214 28 N -0.561 5.561 29 Si 0.817 3.183 30 H -0.194 1.194 31 H -0.196 1.196 32 H -0.199 1.199 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.134 0.866 42 H 0.122 0.878 43 H 0.081 0.919 44 H 0.108 0.892 45 H 0.065 0.935 46 H 0.156 0.844 47 H 0.132 0.868 48 H 0.075 0.925 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.936 15.198 21.393 27.143 hybrid contribution 0.829 -1.533 -1.107 2.065 sum 7.766 13.666 20.286 25.662 Atomic orbital electron populations 1.21491 0.93108 1.02085 1.01637 1.22283 0.97143 0.99097 0.91469 0.86638 1.22489 0.86371 0.95147 0.98313 1.48555 1.30377 1.44537 1.11085 1.20810 0.81153 0.77156 0.89185 1.90680 1.31251 1.50286 1.75084 1.22872 1.02159 0.98762 0.88873 0.86839 1.21735 0.98593 0.98354 0.93211 1.23219 1.06900 0.93075 0.95887 0.85934 1.23159 0.92885 1.00811 1.02085 1.23293 0.98636 0.97788 0.97988 0.84961 1.22296 1.02911 0.94189 0.91903 1.23070 0.99620 1.00572 0.81858 1.23050 0.87895 0.92765 0.99748 0.86271 1.60148 1.56141 1.09770 1.02383 1.21610 0.97054 0.96117 0.92122 1.20884 0.86551 0.87358 0.82711 1.90489 1.48752 1.65954 1.45737 1.41939 1.40476 1.28690 1.09997 1.19645 1.22227 1.08089 0.96323 0.90409 1.26051 0.99019 1.01723 0.94582 1.69671 1.40807 1.42847 1.02771 0.84929 0.78103 0.77372 0.77943 1.19402 1.19560 1.19911 0.91407 0.92744 0.93471 0.91225 0.88362 0.92390 0.91640 0.89879 0.86555 0.87792 0.91929 0.89238 0.93475 0.84394 0.86847 0.92503 0.76996 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.82 71.98 0.63 -1.59 16 2 C -0.08 -1.21 3.45 -9.61 -0.03 -1.24 16 3 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 4 C 0.10 1.52 5.73 86.73 0.50 2.02 16 5 N -0.61 -13.63 3.26 -811.33 -2.65 -16.28 16 6 C 0.53 14.11 7.20 87.66 0.63 14.74 16 7 O -0.59 -21.48 15.98 -3.02 -0.05 -21.53 16 8 C -0.11 -2.06 2.71 -9.47 -0.03 -2.09 16 9 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 10 C -0.08 -1.71 5.71 31.67 0.18 -1.53 16 11 C -0.17 -2.62 6.94 -10.07 -0.07 -2.69 16 12 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 13 C -0.15 -1.95 10.07 30.59 0.31 -1.64 16 14 C -0.16 -1.92 6.88 -10.07 -0.07 -1.99 16 15 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 16 C -0.08 -1.02 5.51 32.44 0.18 -0.84 16 17 C 0.07 1.66 6.35 86.93 0.55 2.21 16 18 C 0.08 1.56 3.14 46.39 0.15 1.70 16 19 H 0.12 2.00 7.83 -2.39 -0.02 1.98 16 20 N -0.65 -19.53 4.57 -488.01 -2.23 -21.76 16 21 C 0.06 2.14 6.03 85.56 0.52 2.65 16 22 C 0.44 21.00 7.82 87.66 0.69 21.69 16 23 O -0.62 -34.80 15.78 -3.08 -0.05 -34.85 16 24 N -0.57 -29.90 5.29 -306.98 -1.62 -31.52 16 25 C -0.33 -19.23 9.68 84.04 0.81 -18.42 16 26 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 27 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 28 N -0.92 -50.30 13.05 21.66 0.28 -50.02 16 29 Si 0.99 43.61 29.55 68.60 2.03 45.63 16 30 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 31 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 32 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 33 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.05 1.17 7.22 -2.39 -0.02 1.15 16 36 H 0.07 1.18 7.82 -2.38 -0.02 1.16 16 37 H 0.10 0.97 6.23 -2.38 -0.01 0.95 16 38 H 0.06 1.48 7.44 -2.38 -0.02 1.46 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 41 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.10 0.92 6.53 -2.39 -0.02 0.90 16 43 H 0.06 0.97 8.06 -2.38 -0.02 0.96 16 44 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.05 1.37 8.03 -2.39 -0.02 1.35 16 46 H 0.34 11.78 8.10 -89.70 -0.73 11.05 16 47 H 0.11 3.29 8.09 -2.39 -0.02 3.27 16 48 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.40 19.60 7.90 -92.70 -0.73 18.86 16 50 H 0.28 14.20 8.31 -92.70 -0.77 13.43 16 Total: -1.00 -74.83 398.59 0.62 -74.21 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: -0.50 Total: 43.43 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 5.41 Total: 12.69 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -6.22 Total: -119.58 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -0.10 Total: -56.38 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -74.83 0.62 -74.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281430264.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.773 kcal (2) G-P(sol) polarization free energy of solvation -74.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds