Wall clock time and date at job start Tue Mar 31 2020 18:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.39061 * 2 1 4 4 C 1.54387 * 110.34368 * 122.23823 * 2 1 3 5 5 N 1.48144 * 104.62017 * 142.73480 * 4 2 1 6 6 C 1.34780 * 127.84120 * 140.38603 * 5 4 2 7 7 O 1.21277 * 120.00213 * 180.02562 * 6 5 4 8 8 C 1.50695 * 119.99729 * 0.02637 * 6 5 4 9 9 H 1.08997 * 110.67535 * 56.76374 * 8 6 5 10 10 C 1.54893 * 110.75534 * 179.97438 * 8 6 5 11 11 C 1.54276 * 104.19476 * 156.25689 * 10 8 6 12 12 H 1.08996 * 117.41287 * 116.37196 * 11 10 8 13 13 C 1.52999 * 118.19747 * 270.99810 * 11 10 8 14 14 C 1.53872 * 106.59915 * 336.38943 * 11 10 8 15 15 H 1.08997 * 121.32962 * 138.62998 * 14 11 10 16 16 C 1.54267 * 106.60020 * 0.02562 * 14 11 10 17 17 C 1.48419 * 104.33981 * 320.38821 * 5 4 2 18 18 C 1.54291 * 110.34246 * 237.77263 * 2 1 3 19 19 H 1.09009 * 110.33944 * 0.10600 * 18 2 1 20 20 N 1.46903 * 110.34471 * 122.25485 * 18 2 1 21 21 C 1.46892 * 111.00144 * 203.52787 * 20 18 2 22 22 C 1.50695 * 109.47369 * 180.02562 * 21 20 18 23 23 O 1.21297 * 119.99943 * 0.02562 * 22 21 20 24 24 N 1.34779 * 120.00454 * 179.97438 * 22 21 20 25 25 C 1.37099 * 120.00130 * 180.02562 * 24 22 21 26 26 H 1.07998 * 120.00049 * 359.97438 * 25 24 22 27 27 C 1.38949 * 119.99753 * 180.02562 * 25 24 22 28 28 N 1.31406 * 120.00069 * 359.97438 * 27 25 24 29 29 Si 1.86798 * 119.99709 * 179.97438 * 27 25 24 30 30 H 1.48506 * 109.47297 * 269.99702 * 29 27 25 31 31 H 1.48503 * 109.47261 * 149.99882 * 29 27 25 32 32 H 1.48500 * 109.47454 * 29.99875 * 29 27 25 33 33 H 1.08994 * 109.47264 * 182.22922 * 1 2 3 34 34 H 1.09001 * 109.47004 * 302.23042 * 1 2 3 35 35 H 1.08999 * 109.47233 * 62.22596 * 1 2 3 36 36 H 1.09006 * 110.40613 * 261.51571 * 4 2 1 37 37 H 1.08998 * 110.40872 * 23.82996 * 4 2 1 38 38 H 1.08998 * 110.48572 * 274.93072 * 10 8 6 39 39 H 1.08995 * 110.48539 * 37.57992 * 10 8 6 40 40 H 1.09003 * 117.46235 * 201.21208 * 13 11 10 41 41 H 1.09001 * 117.46141 * 346.02245 * 13 11 10 42 42 H 1.08998 * 110.48974 * 264.93373 * 16 14 11 43 43 H 1.09000 * 110.48846 * 142.28830 * 16 14 11 44 44 H 1.08996 * 110.44844 * 280.87740 * 17 5 4 45 45 H 1.08996 * 110.49931 * 158.35494 * 17 5 4 46 46 H 1.00896 * 110.99419 * 79.57667 * 20 18 2 47 47 H 1.08998 * 109.47455 * 60.00178 * 21 20 18 48 48 H 1.09007 * 109.47046 * 300.00638 * 21 20 18 49 49 H 0.97006 * 119.99547 * 0.02562 * 24 22 21 50 50 H 0.97001 * 120.00308 * 0.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7722 1.2244 5 7 3.2663 -1.4818 0.7225 6 6 4.4426 -1.6662 1.3541 7 8 5.3369 -2.2742 0.8052 8 6 4.6464 -1.1169 2.7425 9 1 3.8865 -1.5002 3.4234 10 6 6.0669 -1.4510 3.2619 11 6 6.3428 -0.3720 4.3296 12 1 6.4765 -0.7066 5.3583 13 6 6.9846 0.9422 3.8803 14 6 5.4382 0.8251 3.9888 15 1 4.9126 1.3780 4.7673 16 6 4.6436 0.4317 2.7263 17 6 2.8795 -1.9438 -0.6339 18 6 2.0663 -0.7715 -1.2238 19 1 1.2396 -1.1488 -1.8259 20 7 2.9331 0.0948 -2.0339 21 6 3.0007 -0.3789 -3.4227 22 6 3.8972 0.5320 -4.2211 23 8 4.4280 1.4822 -3.6857 24 7 4.1100 0.2905 -5.5299 25 6 4.9261 1.1189 -6.2561 26 1 5.3980 1.9654 -5.7795 27 6 5.1450 0.8701 -7.6055 28 7 4.5703 -0.1595 -8.1854 29 14 6.2563 1.9994 -8.5950 30 1 5.4483 3.0977 -9.1836 31 1 6.9062 1.2253 -9.6830 32 1 7.2978 2.5730 -7.7054 33 1 -0.3633 -1.0268 0.0400 34 1 -0.3633 0.5481 0.8693 35 1 -0.3633 0.4789 -0.9093 36 1 2.3401 -0.0796 2.0205 37 1 1.3226 -1.4847 1.5805 38 1 6.0854 -2.4444 3.7099 39 1 6.7946 -1.3824 2.4534 40 1 7.4932 1.5381 4.6382 41 1 7.4281 0.9705 2.8851 42 1 5.1413 0.8040 1.8309 43 1 3.6239 0.8124 2.7833 44 1 2.2623 -2.8399 -0.5693 45 1 3.7656 -2.1343 -1.2394 46 1 3.8551 0.1631 -1.6299 47 1 2.0008 -0.3766 -3.8565 48 1 3.4027 -1.3920 -3.4419 49 1 3.6858 -0.4696 -5.9580 50 1 3.9930 -0.7457 -7.6716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281430265.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:55 Heat of formation + Delta-G solvation = -40.811956 kcal Electronic energy + Delta-G solvation = -29471.040331 eV Core-core repulsion = 25498.649953 eV Total energy + Delta-G solvation = -3972.390379 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.79970 -39.39104 -38.34039 -37.72349 -34.79720 -34.02163 -32.74048 -32.09735 -31.05801 -29.03776 -28.41936 -26.65403 -26.28295 -24.37874 -23.59964 -22.38405 -21.08541 -20.33346 -20.00677 -19.60612 -19.17501 -17.88991 -17.35913 -16.63716 -16.39256 -16.26279 -15.69486 -15.15711 -15.06724 -14.60093 -14.12037 -14.04203 -13.88074 -13.68282 -13.56094 -13.49815 -13.21168 -12.84340 -12.76469 -12.62909 -12.26167 -12.20850 -11.82812 -11.69766 -11.63731 -11.41613 -11.34654 -11.21550 -11.17938 -11.10136 -10.93778 -10.87853 -10.27997 -10.20173 -10.08258 -9.85320 -9.77764 -9.53038 -9.06462 -8.49005 -8.10641 -8.00817 -6.73652 -3.86592 2.45458 2.70121 3.29229 3.32423 3.36849 3.56211 3.86091 3.97910 4.04460 4.28453 4.31650 4.33967 4.43416 4.48340 4.74424 4.78666 4.83377 4.86454 4.98786 5.02606 5.06154 5.11125 5.15050 5.17465 5.23018 5.26021 5.29887 5.40962 5.48034 5.49886 5.54432 5.55499 5.65363 5.67504 5.79432 5.82074 5.84961 5.91194 5.92043 5.94030 5.98339 6.01243 6.09910 6.18813 7.12047 7.36534 7.53312 7.82956 8.00476 8.10135 8.61946 8.81788 9.49454 9.89465 10.69971 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.002631 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.764131 B =10640.290845 C =11879.034369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 H 0.097 0.903 4 C 0.098 3.902 5 N -0.620 5.620 6 C 0.540 3.460 7 O -0.537 6.537 8 C -0.107 4.107 9 H 0.101 0.899 10 C -0.078 4.078 11 C -0.164 4.164 12 H 0.110 0.890 13 C -0.153 4.153 14 C -0.167 4.167 15 H 0.113 0.887 16 C -0.085 4.085 17 C 0.072 3.928 18 C 0.077 3.923 19 H 0.095 0.905 20 N -0.655 5.655 21 C 0.048 3.952 22 C 0.444 3.556 23 O -0.576 6.576 24 N -0.576 5.576 25 C -0.381 4.381 26 H 0.099 0.901 27 C -0.010 4.010 28 N -0.902 5.902 29 Si 1.094 2.906 30 H -0.284 1.284 31 H -0.281 1.281 32 H -0.283 1.283 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.352 0.648 47 H 0.087 0.913 48 H 0.043 0.957 49 H 0.375 0.625 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.345 -3.623 25.114 26.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.115 0.885 4 C -0.025 4.025 5 N -0.354 5.354 6 C 0.329 3.671 7 O -0.413 6.413 8 C -0.128 4.128 9 H 0.119 0.881 10 C -0.116 4.116 11 C -0.182 4.182 12 H 0.128 0.872 13 C -0.190 4.190 14 C -0.185 4.185 15 H 0.131 0.869 16 C -0.123 4.123 17 C -0.053 4.053 18 C -0.035 4.035 19 H 0.113 0.887 20 N -0.287 5.287 21 C -0.085 4.085 22 C 0.229 3.771 23 O -0.460 6.460 24 N -0.214 5.214 25 C -0.510 4.510 26 H 0.117 0.883 27 C -0.212 4.212 28 N -0.541 5.541 29 Si 0.920 3.080 30 H -0.211 1.211 31 H -0.206 1.206 32 H -0.209 1.209 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.173 0.827 47 H 0.105 0.895 48 H 0.061 0.939 49 H 0.208 0.792 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.217 -2.599 23.563 24.507 hybrid contribution -0.552 -1.625 1.438 2.239 sum -6.769 -4.224 25.000 26.243 Atomic orbital electron populations 1.21779 0.93725 1.01742 1.02487 1.22166 0.96071 1.00888 0.92673 0.88491 1.22699 0.86704 0.95608 0.97487 1.48988 1.13108 1.55868 1.17469 1.20184 0.80181 0.79315 0.87381 1.90731 1.41097 1.41847 1.67642 1.22436 1.00072 0.97001 0.93327 0.88107 1.21817 0.94677 0.97676 0.97449 1.23256 1.05359 0.89725 0.99837 0.87226 1.23476 0.93734 0.98766 1.03029 1.23570 0.91777 1.03404 0.99771 0.86857 1.21961 1.00529 0.92191 0.97606 1.23235 1.00014 0.97969 0.84063 1.22693 0.95979 0.90565 0.94230 0.88700 1.60233 1.18048 1.49530 1.00879 1.21735 1.00506 0.96423 0.89800 1.19704 0.86295 0.88142 0.82921 1.90532 1.53405 1.31851 1.70175 1.41937 1.43883 1.27304 1.08266 1.20566 1.25797 1.10337 0.94347 0.88312 1.26507 1.00304 0.99846 0.94556 1.70868 1.29765 1.14720 1.38790 0.83094 0.75256 0.74420 0.75265 1.21094 1.20650 1.20925 0.92663 0.92357 0.91701 0.89821 0.90970 0.90837 0.89818 0.88295 0.88587 0.90463 0.90274 0.90892 0.89886 0.82729 0.89500 0.93887 0.79166 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.92 37.15 0.33 -0.67 16 2 C -0.10 -0.90 3.45 -89.22 -0.31 -1.21 16 3 H 0.10 1.06 7.95 -51.93 -0.41 0.65 16 4 C 0.10 0.78 6.36 -2.41 -0.02 0.77 16 5 N -0.62 -6.94 3.32 -169.09 -0.56 -7.50 16 6 C 0.54 7.01 7.24 -10.99 -0.08 6.93 16 7 O -0.54 -9.29 16.00 5.56 0.09 -9.20 16 8 C -0.11 -1.02 2.64 -89.79 -0.24 -1.26 16 9 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 10 C -0.08 -0.78 5.70 -25.06 -0.14 -0.92 16 11 C -0.16 -1.34 6.85 -89.50 -0.61 -1.96 16 12 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 13 C -0.15 -1.28 10.21 -25.42 -0.26 -1.54 16 14 C -0.17 -1.33 7.04 -88.19 -0.62 -1.95 16 15 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 16 C -0.09 -0.76 5.54 -25.08 -0.14 -0.90 16 17 C 0.07 0.84 6.49 -2.26 -0.01 0.82 16 18 C 0.08 0.88 3.02 -66.31 -0.20 0.68 16 19 H 0.09 0.98 7.41 -51.92 -0.38 0.59 16 20 N -0.66 -10.44 5.79 -106.51 -0.62 -11.06 16 21 C 0.05 0.84 6.01 -4.98 -0.03 0.81 16 22 C 0.44 10.69 7.82 -10.99 -0.09 10.60 16 23 O -0.58 -16.10 15.78 5.54 0.09 -16.02 16 24 N -0.58 -14.77 5.28 -10.96 -0.06 -14.83 16 25 C -0.38 -10.93 9.68 -14.93 -0.14 -11.08 16 26 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 27 C -0.01 -0.27 5.50 -17.47 -0.10 -0.37 16 28 N -0.90 -25.65 13.68 55.50 0.76 -24.89 16 29 Si 1.09 24.78 29.92 -169.99 -5.09 19.69 16 30 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 31 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 32 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 33 H 0.05 0.34 8.10 -51.93 -0.42 -0.08 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.56 5.11 -51.93 -0.27 0.29 16 37 H 0.07 0.46 7.83 -51.93 -0.41 0.06 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.03 7.43 -51.93 -0.39 0.65 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 43 H 0.08 0.57 6.13 -51.93 -0.32 0.25 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.20 7.60 -51.93 -0.39 0.81 16 46 H 0.35 6.34 8.16 -39.29 -0.32 6.02 16 47 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 48 H 0.04 0.70 7.96 -51.92 -0.41 0.28 16 49 H 0.38 8.87 6.73 -40.82 -0.27 8.59 16 50 H 0.26 7.13 6.78 -40.82 -0.28 6.85 16 LS Contribution 397.30 15.07 5.99 5.99 Total: -1.00 -35.08 397.30 -10.14 -45.22 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -8.09 Total: 13.84 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -2.65 Total: -1.24 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.48 Total: -58.27 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: 0.18 Total: -25.22 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.09 Total: 19.69 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.08 -10.14 -45.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281430265.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.407 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds