Wall clock time and date at job start Tue Mar 31 2020 18:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 110.39061 * 2 1 4 4 C 1.54387 * 110.34368 * 122.23823 * 2 1 3 5 5 N 1.48144 * 104.62017 * 142.73480 * 4 2 1 6 6 C 1.34780 * 127.84120 * 140.38603 * 5 4 2 7 7 O 1.21277 * 120.00213 * 180.02562 * 6 5 4 8 8 C 1.50695 * 119.99729 * 0.02637 * 6 5 4 9 9 H 1.08997 * 110.67535 * 56.76374 * 8 6 5 10 10 C 1.54893 * 110.75534 * 179.97438 * 8 6 5 11 11 C 1.54276 * 104.19476 * 156.25689 * 10 8 6 12 12 H 1.08996 * 117.41287 * 116.37196 * 11 10 8 13 13 C 1.52999 * 118.19747 * 270.99810 * 11 10 8 14 14 C 1.53872 * 106.59915 * 336.38943 * 11 10 8 15 15 H 1.08997 * 121.32962 * 138.62998 * 14 11 10 16 16 C 1.54267 * 106.60020 * 0.02562 * 14 11 10 17 17 C 1.48419 * 104.33981 * 320.38821 * 5 4 2 18 18 C 1.54291 * 110.34246 * 237.77263 * 2 1 3 19 19 H 1.09009 * 110.33944 * 0.10600 * 18 2 1 20 20 N 1.46903 * 110.34471 * 122.25485 * 18 2 1 21 21 C 1.46892 * 111.00144 * 203.52787 * 20 18 2 22 22 C 1.50695 * 109.47369 * 180.02562 * 21 20 18 23 23 O 1.21297 * 119.99943 * 0.02562 * 22 21 20 24 24 N 1.34779 * 120.00454 * 179.97438 * 22 21 20 25 25 C 1.37099 * 120.00130 * 180.02562 * 24 22 21 26 26 H 1.07998 * 120.00049 * 359.97438 * 25 24 22 27 27 C 1.38949 * 119.99753 * 180.02562 * 25 24 22 28 28 N 1.31406 * 120.00069 * 359.97438 * 27 25 24 29 29 Si 1.86798 * 119.99709 * 179.97438 * 27 25 24 30 30 H 1.48506 * 109.47297 * 269.99702 * 29 27 25 31 31 H 1.48503 * 109.47261 * 149.99882 * 29 27 25 32 32 H 1.48500 * 109.47454 * 29.99875 * 29 27 25 33 33 H 1.08994 * 109.47264 * 182.22922 * 1 2 3 34 34 H 1.09001 * 109.47004 * 302.23042 * 1 2 3 35 35 H 1.08999 * 109.47233 * 62.22596 * 1 2 3 36 36 H 1.09006 * 110.40613 * 261.51571 * 4 2 1 37 37 H 1.08998 * 110.40872 * 23.82996 * 4 2 1 38 38 H 1.08998 * 110.48572 * 274.93072 * 10 8 6 39 39 H 1.08995 * 110.48539 * 37.57992 * 10 8 6 40 40 H 1.09003 * 117.46235 * 201.21208 * 13 11 10 41 41 H 1.09001 * 117.46141 * 346.02245 * 13 11 10 42 42 H 1.08998 * 110.48974 * 264.93373 * 16 14 11 43 43 H 1.09000 * 110.48846 * 142.28830 * 16 14 11 44 44 H 1.08996 * 110.44844 * 280.87740 * 17 5 4 45 45 H 1.08996 * 110.49931 * 158.35494 * 17 5 4 46 46 H 1.00896 * 110.99419 * 79.57667 * 20 18 2 47 47 H 1.08998 * 109.47455 * 60.00178 * 21 20 18 48 48 H 1.09007 * 109.47046 * 300.00638 * 21 20 18 49 49 H 0.97006 * 119.99547 * 0.02562 * 24 22 21 50 50 H 0.97001 * 120.00308 * 0.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0667 -0.7722 1.2244 5 7 3.2663 -1.4818 0.7225 6 6 4.4426 -1.6662 1.3541 7 8 5.3369 -2.2742 0.8052 8 6 4.6464 -1.1169 2.7425 9 1 3.8865 -1.5002 3.4234 10 6 6.0669 -1.4510 3.2619 11 6 6.3428 -0.3720 4.3296 12 1 6.4765 -0.7066 5.3583 13 6 6.9846 0.9422 3.8803 14 6 5.4382 0.8251 3.9888 15 1 4.9126 1.3780 4.7673 16 6 4.6436 0.4317 2.7263 17 6 2.8795 -1.9438 -0.6339 18 6 2.0663 -0.7715 -1.2238 19 1 1.2396 -1.1488 -1.8259 20 7 2.9331 0.0948 -2.0339 21 6 3.0007 -0.3789 -3.4227 22 6 3.8972 0.5320 -4.2211 23 8 4.4280 1.4822 -3.6857 24 7 4.1100 0.2905 -5.5299 25 6 4.9261 1.1189 -6.2561 26 1 5.3980 1.9654 -5.7795 27 6 5.1450 0.8701 -7.6055 28 7 4.5703 -0.1595 -8.1854 29 14 6.2563 1.9994 -8.5950 30 1 5.4483 3.0977 -9.1836 31 1 6.9062 1.2253 -9.6830 32 1 7.2978 2.5730 -7.7054 33 1 -0.3633 -1.0268 0.0400 34 1 -0.3633 0.5481 0.8693 35 1 -0.3633 0.4789 -0.9093 36 1 2.3401 -0.0796 2.0205 37 1 1.3226 -1.4847 1.5805 38 1 6.0854 -2.4444 3.7099 39 1 6.7946 -1.3824 2.4534 40 1 7.4932 1.5381 4.6382 41 1 7.4281 0.9705 2.8851 42 1 5.1413 0.8040 1.8309 43 1 3.6239 0.8124 2.7833 44 1 2.2623 -2.8399 -0.5693 45 1 3.7656 -2.1343 -1.2394 46 1 3.8551 0.1631 -1.6299 47 1 2.0008 -0.3766 -3.8565 48 1 3.4027 -1.3920 -3.4419 49 1 3.6858 -0.4696 -5.9580 50 1 3.9930 -0.7457 -7.6716 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281430265.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:54 Heat of formation + Delta-G solvation = -65.492913 kcal Electronic energy + Delta-G solvation = -29472.110578 eV Core-core repulsion = 25498.649953 eV Total energy + Delta-G solvation = -3973.460625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.68926 -40.50998 -39.90622 -38.79665 -36.55969 -35.60425 -33.64908 -33.14156 -32.84752 -30.09631 -29.23923 -27.77299 -27.34595 -26.01304 -24.71865 -23.28627 -21.85152 -21.60566 -21.02064 -20.69791 -20.09629 -20.00092 -18.41977 -17.97822 -17.35512 -17.23597 -16.88215 -16.60340 -16.46903 -15.86145 -15.65973 -15.45350 -15.07070 -14.90594 -14.43370 -14.31675 -14.22358 -13.99359 -13.79303 -13.62417 -13.38789 -13.25502 -13.07006 -13.03198 -12.77065 -12.60200 -12.36034 -12.18656 -12.06448 -12.02898 -11.97141 -11.92740 -11.85678 -11.65021 -11.56070 -11.00273 -10.89567 -10.59438 -10.47022 -10.15038 -10.02289 -9.33942 -8.96799 -6.10648 1.47935 1.48894 1.52065 1.79777 1.83674 1.96412 2.36871 2.61248 2.74114 3.12703 3.21138 3.32441 3.51100 3.60513 3.65013 3.75232 3.99837 4.02560 4.10545 4.10897 4.16847 4.19125 4.28750 4.32195 4.37968 4.40983 4.43473 4.47031 4.55765 4.60502 4.62084 4.67548 4.77195 4.86746 4.90668 4.99495 5.04810 5.07866 5.15571 5.20688 5.29921 5.33323 5.38737 5.46140 5.57140 5.90823 5.97403 6.15488 6.47309 6.53772 6.70224 7.03420 7.39604 7.87787 8.51093 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012366 B = 0.002631 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.764131 B =10640.290845 C =11879.034369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.093 4.093 3 H 0.076 0.924 4 C 0.100 3.900 5 N -0.620 5.620 6 C 0.530 3.470 7 O -0.594 6.594 8 C -0.098 4.098 9 H 0.134 0.866 10 C -0.084 4.084 11 C -0.158 4.158 12 H 0.132 0.868 13 C -0.168 4.168 14 C -0.158 4.158 15 H 0.140 0.860 16 C -0.084 4.084 17 C 0.071 3.929 18 C 0.077 3.923 19 H 0.115 0.885 20 N -0.666 5.666 21 C 0.063 3.937 22 C 0.440 3.560 23 O -0.620 6.620 24 N -0.586 5.586 25 C -0.411 4.411 26 H 0.071 0.929 27 C -0.041 4.041 28 N -0.916 5.916 29 Si 1.135 2.865 30 H -0.267 1.267 31 H -0.271 1.271 32 H -0.279 1.279 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.117 0.883 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.047 0.953 46 H 0.335 0.665 47 H 0.115 0.885 48 H 0.060 0.940 49 H 0.385 0.615 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 -3.777 27.286 29.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.113 4.113 3 H 0.095 0.905 4 C -0.022 4.022 5 N -0.353 5.353 6 C 0.321 3.679 7 O -0.475 6.475 8 C -0.119 4.119 9 H 0.152 0.848 10 C -0.122 4.122 11 C -0.176 4.176 12 H 0.150 0.850 13 C -0.205 4.205 14 C -0.176 4.176 15 H 0.157 0.843 16 C -0.122 4.122 17 C -0.053 4.053 18 C -0.033 4.033 19 H 0.133 0.867 20 N -0.296 5.296 21 C -0.069 4.069 22 C 0.228 3.772 23 O -0.505 6.505 24 N -0.225 5.225 25 C -0.540 4.540 26 H 0.089 0.911 27 C -0.240 4.240 28 N -0.555 5.555 29 Si 0.955 3.045 30 H -0.193 1.193 31 H -0.196 1.196 32 H -0.205 1.205 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.065 0.935 46 H 0.154 0.846 47 H 0.133 0.867 48 H 0.077 0.923 49 H 0.219 0.781 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.842 -2.766 25.750 27.366 hybrid contribution 0.214 -1.594 0.783 1.789 sum -8.628 -4.360 26.533 28.239 Atomic orbital electron populations 1.21746 0.91528 1.03057 1.02770 1.22130 0.97682 0.99510 0.91933 0.90525 1.22947 0.85752 0.96266 0.97207 1.49112 1.13590 1.55336 1.17223 1.20876 0.79860 0.78627 0.88540 1.90700 1.43019 1.44597 1.69203 1.22477 1.00535 0.97250 0.91602 0.84834 1.21809 0.94358 0.98965 0.97022 1.23260 1.05373 0.88949 1.00049 0.85035 1.23534 0.94722 0.99785 1.02445 1.23673 0.91220 1.03119 0.99549 0.84252 1.21957 1.01749 0.91646 0.96840 1.23218 0.98857 0.99119 0.84149 1.22893 0.95360 0.90254 0.94815 0.86732 1.60309 1.17555 1.51286 1.00474 1.21623 1.00136 0.95164 0.90007 1.20900 0.85704 0.88051 0.82584 1.90499 1.55044 1.34014 1.70976 1.41991 1.44059 1.27472 1.08974 1.20538 1.27433 1.10785 0.95292 0.91105 1.27848 1.00651 1.00362 0.95114 1.70937 1.30326 1.15218 1.38997 0.82605 0.74110 0.73426 0.74357 1.19277 1.19612 1.20485 0.90916 0.90604 0.92854 0.88086 0.87891 0.90182 0.93499 0.86441 0.91008 0.93812 0.87860 0.88351 0.93476 0.84632 0.86676 0.92253 0.78077 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.92 71.98 0.64 -0.78 16 2 C -0.09 -1.48 3.45 -9.89 -0.03 -1.51 16 3 H 0.08 1.58 7.95 -2.39 -0.02 1.56 16 4 C 0.10 1.26 6.36 86.53 0.55 1.81 16 5 N -0.62 -13.24 3.32 -807.26 -2.68 -15.92 16 6 C 0.53 13.97 7.24 87.65 0.63 14.61 16 7 O -0.59 -22.00 16.00 -3.02 -0.05 -22.05 16 8 C -0.10 -1.76 2.64 -10.26 -0.03 -1.79 16 9 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 10 C -0.08 -1.68 5.70 31.67 0.18 -1.50 16 11 C -0.16 -2.39 6.85 -10.07 -0.07 -2.45 16 12 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 13 C -0.17 -2.77 10.21 31.44 0.32 -2.45 16 14 C -0.16 -2.20 7.04 -9.22 -0.06 -2.26 16 15 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 16 C -0.08 -1.40 5.54 31.66 0.18 -1.23 16 17 C 0.07 1.61 6.49 86.48 0.56 2.17 16 18 C 0.08 1.65 3.02 45.82 0.14 1.79 16 19 H 0.11 2.01 7.41 -2.38 -0.02 2.00 16 20 N -0.67 -21.29 5.79 -490.88 -2.84 -24.13 16 21 C 0.06 2.20 6.01 85.56 0.51 2.71 16 22 C 0.44 21.77 7.82 87.66 0.69 22.46 16 23 O -0.62 -36.11 15.78 -3.08 -0.05 -36.16 16 24 N -0.59 -30.86 5.28 -306.98 -1.62 -32.48 16 25 C -0.41 -24.32 9.68 84.04 0.81 -23.50 16 26 H 0.07 4.52 7.16 -2.91 -0.02 4.50 16 27 C -0.04 -2.32 5.50 84.93 0.47 -1.85 16 28 N -0.92 -52.16 13.68 21.66 0.30 -51.86 16 29 Si 1.14 49.95 29.92 68.60 2.05 52.01 16 30 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 31 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 32 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 33 H 0.07 0.56 8.10 -2.39 -0.02 0.54 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.10 0.95 5.11 -2.38 -0.01 0.94 16 37 H 0.10 0.78 7.83 -2.39 -0.02 0.77 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.28 7.43 -2.39 -0.02 1.26 16 40 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.04 1.02 8.04 -2.39 -0.02 1.01 16 43 H 0.10 1.19 6.13 -2.39 -0.01 1.17 16 44 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.05 1.42 7.60 -2.39 -0.02 1.40 16 46 H 0.34 12.64 8.16 -89.70 -0.73 11.91 16 47 H 0.12 3.40 8.07 -2.39 -0.02 3.38 16 48 H 0.06 1.90 7.96 -2.38 -0.02 1.88 16 49 H 0.39 18.51 6.73 -92.70 -0.62 17.89 16 50 H 0.26 14.29 6.78 -92.71 -0.63 13.66 16 Total: -1.00 -81.59 397.30 0.34 -81.24 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: -0.25 Total: 43.13 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 5.49 Total: 6.21 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -6.85 Total: -124.39 kcal Atomic # 8 Polarization: -58.10 SS G_CDS: -0.10 Total: -58.20 kcal Atomic # 14 Polarization: 49.95 SS G_CDS: 2.05 Total: 52.01 kcal Total: -81.59 0.34 -81.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281430265.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.752 kcal (2) G-P(sol) polarization free energy of solvation -81.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds