Wall clock time and date at job start Tue Mar 31 2020 19:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47098 * 2 1 4 4 C 1.50701 * 109.47199 * 120.00098 * 2 1 3 5 5 N 1.34662 * 125.80074 * 299.97075 * 4 2 1 6 6 H 0.97001 * 124.84708 * 0.02562 * 5 4 2 7 7 C 1.36443 * 110.29894 * 180.02562 * 5 4 2 8 8 C 1.34488 * 108.85658 * 359.71949 * 7 5 4 9 9 C 1.36765 * 125.80340 * 119.99768 * 4 2 1 10 10 C 1.47270 * 126.94143 * 359.97438 * 9 4 2 11 11 O 1.21624 * 119.99655 * 46.25287 * 10 9 4 12 12 N 1.34774 * 119.99923 * 226.25454 * 10 9 4 13 13 C 1.47152 * 120.98114 * 355.87008 * 12 10 9 14 14 C 1.53296 * 108.38333 * 129.48573 * 13 12 10 15 15 O 1.42969 * 109.22245 * 52.29939 * 14 13 12 16 16 C 1.42952 * 114.17024 * 297.42286 * 15 14 13 17 17 H 1.09000 * 109.51153 * 302.60407 * 16 15 14 18 18 C 1.53000 * 109.51531 * 182.50345 * 16 15 14 19 19 H 1.09001 * 109.47353 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47187 * 59.99754 * 18 16 15 21 21 N 1.46500 * 109.46735 * 299.99948 * 18 16 15 22 22 C 1.36938 * 119.99522 * 205.00312 * 21 18 16 23 23 H 1.07995 * 120.00570 * 359.97438 * 22 21 18 24 24 C 1.38813 * 119.99597 * 180.02562 * 22 21 18 25 25 N 1.31614 * 120.00384 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99781 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47280 * 179.97438 * 26 24 22 28 28 H 1.48504 * 109.46913 * 299.99196 * 26 24 22 29 29 H 1.48494 * 109.47652 * 59.99361 * 26 24 22 30 30 C 1.47147 * 120.98417 * 175.89229 * 12 10 9 31 31 H 1.09003 * 109.46836 * 300.00213 * 1 2 3 32 32 H 1.08999 * 109.47124 * 60.00023 * 1 2 3 33 33 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46836 * 239.99786 * 2 1 3 35 35 H 1.09006 * 109.47086 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47114 * 299.99983 * 3 2 1 37 37 H 1.08993 * 109.47600 * 60.00025 * 3 2 1 38 38 H 1.08002 * 125.57596 * 180.02562 * 7 5 4 39 39 H 1.08000 * 126.83681 * 180.26833 * 8 7 5 40 40 H 1.09003 * 109.68387 * 9.76549 * 13 12 10 41 41 H 1.09000 * 109.68318 * 249.20519 * 13 12 10 42 42 H 1.09000 * 109.51528 * 292.37954 * 14 13 12 43 43 H 1.09003 * 109.55429 * 172.24865 * 14 13 12 44 44 H 1.09002 * 109.46941 * 180.02562 * 20 18 16 45 45 H 1.09003 * 109.46918 * 299.99946 * 20 18 16 46 46 H 1.08993 * 109.47176 * 59.99896 * 20 18 16 47 47 H 0.96994 * 120.00633 * 24.99704 * 21 18 16 48 48 H 0.97000 * 120.00557 * 179.97438 * 25 24 22 49 49 H 1.08998 * 109.68412 * 110.78616 * 30 12 10 50 50 H 1.09003 * 109.67833 * 350.23784 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7805 -0.3533 2.5042 6 1 1.2420 0.4084 2.7702 7 6 2.3910 -1.2161 3.3672 8 6 3.0448 -2.1519 2.6563 9 6 2.8219 -1.8271 1.2433 10 6 3.3388 -2.5591 0.0746 11 8 3.8396 -1.9502 -0.8515 12 7 3.2568 -3.9036 0.0313 13 6 2.7379 -4.6681 1.1766 14 6 1.6589 -5.6303 0.6667 15 8 2.1856 -6.3946 -0.4207 16 6 2.5589 -5.6136 -1.5584 17 1 1.6975 -5.0444 -1.9077 18 6 3.0473 -6.5384 -2.6752 19 1 3.3321 -5.9422 -3.5421 20 6 1.9258 -7.5033 -3.0653 21 7 4.2064 -7.3012 -2.2055 22 6 5.1165 -7.7874 -3.1059 23 1 4.9795 -7.6089 -4.1621 24 6 6.2146 -8.5107 -2.6609 25 7 6.3813 -8.7287 -1.3737 26 14 7.4556 -9.1746 -3.8891 27 1 8.5267 -9.9051 -3.1649 28 1 6.7744 -10.0995 -4.8303 29 1 8.0527 -8.0468 -4.6485 30 6 3.6839 -4.6506 -1.1624 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 2.3513 -1.1598 4.4450 39 1 3.6215 -2.9769 3.0478 40 1 2.3050 -3.9855 1.9079 41 1 3.5473 -5.2349 1.6367 42 1 0.7944 -5.0604 0.3260 43 1 1.3585 -6.3013 1.4715 44 1 2.2739 -8.1624 -3.8607 45 1 1.6414 -8.0995 -2.1982 46 1 1.0633 -6.9357 -3.4147 47 1 4.3294 -7.4619 -1.2569 48 1 7.1484 -9.2345 -1.0628 49 1 4.5886 -5.2154 -0.9378 50 1 3.8776 -3.9562 -1.9800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282912985.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:15 Heat of formation + Delta-G solvation = -23.079333 kcal Electronic energy + Delta-G solvation = -30367.514616 eV Core-core repulsion = 26395.893182 eV Total energy + Delta-G solvation = -3971.621435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58120 -39.73556 -37.95500 -35.58853 -35.28191 -34.25936 -32.25674 -31.33350 -29.94715 -28.83533 -28.30303 -27.48592 -27.39671 -24.32894 -23.39000 -23.21241 -22.20099 -21.06117 -20.61571 -19.58429 -18.38897 -17.72708 -17.20769 -16.33782 -16.11951 -15.52582 -15.36015 -14.85285 -14.64316 -14.56173 -14.38979 -14.35584 -14.09017 -13.67806 -13.34402 -13.22652 -13.18731 -13.01638 -12.94944 -12.54478 -12.41589 -12.25376 -11.82403 -11.63606 -11.48577 -11.36218 -11.25604 -11.15413 -11.06262 -10.75419 -10.70994 -10.37531 -10.22374 -9.93996 -9.77568 -9.56568 -9.48301 -8.88314 -8.84089 -8.38788 -8.13166 -6.84677 -5.66470 -2.94584 1.82411 2.31023 2.89222 3.21303 3.40689 3.50924 3.55227 3.55933 4.12770 4.35570 4.57605 4.67417 4.75232 4.84119 4.96626 5.02380 5.12608 5.22989 5.25902 5.29075 5.33071 5.44660 5.47244 5.50561 5.55273 5.60921 5.66967 5.71125 5.73778 5.82968 5.84900 5.94556 5.95243 5.99791 6.03894 6.14722 6.30431 6.48533 6.53527 6.58366 6.72770 6.75571 6.82335 6.86771 7.21094 7.24713 7.60128 7.67404 7.78839 8.45439 8.51933 9.64011 10.21875 10.59296 11.55811 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017022 B = 0.002887 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.569421 B = 9696.509321 C = 9739.935307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.039 4.039 3 C -0.143 4.143 4 C 0.099 3.901 5 N -0.551 5.551 6 H 0.413 0.587 7 C -0.015 4.015 8 C -0.170 4.170 9 C -0.218 4.218 10 C 0.590 3.410 11 O -0.547 6.547 12 N -0.605 5.605 13 C 0.067 3.933 14 C 0.049 3.951 15 O -0.360 6.360 16 C 0.079 3.921 17 H 0.053 0.947 18 C 0.182 3.818 19 H 0.059 0.941 20 C -0.160 4.160 21 N -0.717 5.717 22 C -0.238 4.238 23 H 0.069 0.931 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.292 1.292 28 H -0.287 1.287 29 H -0.286 1.286 30 C 0.087 3.913 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.169 0.831 39 H 0.147 0.853 40 H 0.101 0.899 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.100 0.900 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.032 0.968 47 H 0.390 0.610 48 H 0.254 0.746 49 H 0.096 0.904 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 18.850 10.866 26.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.059 4.059 3 C -0.200 4.200 4 C -0.018 4.018 5 N -0.146 5.146 6 H 0.249 0.751 7 C -0.143 4.143 8 C -0.194 4.194 9 C -0.228 4.228 10 C 0.379 3.621 11 O -0.426 6.426 12 N -0.337 5.337 13 C -0.056 4.056 14 C -0.030 4.030 15 O -0.278 6.278 16 C 0.020 3.980 17 H 0.071 0.929 18 C 0.072 3.928 19 H 0.077 0.923 20 C -0.220 4.220 21 N -0.359 5.359 22 C -0.369 4.369 23 H 0.087 0.913 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.214 1.214 29 H -0.213 1.213 30 C -0.035 4.035 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.186 0.814 39 H 0.165 0.835 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.225 0.775 48 H 0.064 0.936 49 H 0.114 0.886 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.960 19.007 10.304 26.291 hybrid contribution 0.537 -0.016 0.078 0.543 sum -14.423 18.990 10.383 26.009 Atomic orbital electron populations 1.21869 0.94239 1.02353 1.01891 1.19941 0.95464 0.96122 0.94328 1.21807 1.02140 0.94470 1.01602 1.20045 1.00330 0.95888 0.85535 1.41429 1.42242 1.25667 1.05255 0.75096 1.21702 1.02651 0.94217 0.95723 1.22058 1.04934 1.01411 0.90995 1.20129 1.09191 1.00071 0.93445 1.17456 0.77986 0.81161 0.85458 1.90759 1.45191 1.67679 1.38940 1.48033 1.63477 1.05427 1.16808 1.22667 0.98246 0.95418 0.89310 1.22887 0.94563 0.94558 0.90946 1.88089 1.82547 1.32898 1.24278 1.22892 0.95094 0.92564 0.87442 0.92946 1.20256 0.88710 0.91522 0.92352 0.92308 1.22348 0.97756 1.00417 1.01493 1.42375 1.23030 1.63206 1.07310 1.19202 1.01084 1.27058 0.89595 0.91301 1.24706 0.98900 1.01365 0.95839 1.69660 1.30775 1.45341 1.12110 0.86312 0.81188 0.78683 0.80256 1.21829 1.21402 1.21326 1.22404 0.99020 0.94494 0.87580 0.93138 0.91652 0.92164 0.87755 0.91769 0.91736 0.93340 0.81387 0.83511 0.88063 0.90455 0.93569 0.88215 0.92818 0.92570 0.94925 0.77490 0.93597 0.88608 0.88762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.18 37.16 0.34 -0.74 16 2 C -0.04 -0.38 3.26 -91.77 -0.30 -0.68 16 3 C -0.14 -1.17 9.18 37.16 0.34 -0.83 16 4 C 0.10 1.06 5.68 -81.88 -0.47 0.59 16 5 N -0.55 -4.18 5.90 -9.11 -0.05 -4.23 16 6 H 0.41 1.87 8.96 -40.82 -0.37 1.50 16 7 C -0.02 -0.12 11.89 -16.83 -0.20 -0.32 16 8 C -0.17 -1.80 8.70 -37.50 -0.33 -2.13 16 9 C -0.22 -2.90 5.33 -103.35 -0.55 -3.45 16 10 C 0.59 9.88 7.22 -12.59 -0.09 9.78 16 11 O -0.55 -10.86 15.53 5.26 0.08 -10.78 16 12 N -0.60 -9.83 3.02 -173.60 -0.52 -10.36 16 13 C 0.07 0.89 6.00 -3.53 -0.02 0.87 16 14 C 0.05 0.65 6.99 37.31 0.26 0.91 16 15 O -0.36 -6.42 9.22 -35.23 -0.32 -6.74 16 16 C 0.08 1.42 2.53 -26.58 -0.07 1.35 16 17 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 18 C 0.18 3.74 2.74 -67.93 -0.19 3.56 16 19 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 20 C -0.16 -3.05 9.35 37.16 0.35 -2.70 16 21 N -0.72 -18.16 4.29 -53.43 -0.23 -18.39 16 22 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 23 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 25 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 26 Si 0.90 22.80 29.55 -169.99 -5.02 17.77 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 30 C 0.09 1.62 5.85 -3.54 -0.02 1.60 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.10 1.32 6.69 -51.93 -0.35 0.97 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 39 H 0.15 1.44 7.53 -52.49 -0.40 1.04 16 40 H 0.10 1.12 4.57 -51.93 -0.24 0.89 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.06 1.12 7.68 -51.93 -0.40 0.72 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.39 10.67 7.20 -40.82 -0.29 10.38 16 48 H 0.25 7.56 8.31 -40.82 -0.34 7.23 16 49 H 0.10 2.10 7.26 -51.93 -0.38 1.72 16 50 H 0.09 1.83 7.11 -51.93 -0.37 1.46 16 LS Contribution 398.17 15.07 6.00 6.00 Total: -1.00 -34.34 398.17 -8.78 -43.12 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -8.25 Total: 10.75 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.18 Total: 0.57 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.08 Total: -60.70 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.24 Total: -17.52 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.34 -8.78 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282912985.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.038 kcal (2) G-P(sol) polarization free energy of solvation -34.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds