Wall clock time and date at job start Tue Mar 31 2020 19:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47098 * 2 1 4 4 C 1.50701 * 109.47199 * 120.00098 * 2 1 3 5 5 N 1.34662 * 125.80074 * 299.97075 * 4 2 1 6 6 H 0.97001 * 124.84708 * 0.02562 * 5 4 2 7 7 C 1.36443 * 110.29894 * 180.02562 * 5 4 2 8 8 C 1.34488 * 108.85658 * 359.71949 * 7 5 4 9 9 C 1.36765 * 125.80340 * 119.99768 * 4 2 1 10 10 C 1.47270 * 126.94143 * 359.97438 * 9 4 2 11 11 O 1.21624 * 119.99655 * 46.25287 * 10 9 4 12 12 N 1.34774 * 119.99923 * 226.25454 * 10 9 4 13 13 C 1.47152 * 120.98114 * 355.87008 * 12 10 9 14 14 C 1.53296 * 108.38333 * 129.48573 * 13 12 10 15 15 O 1.42969 * 109.22245 * 52.29939 * 14 13 12 16 16 C 1.42952 * 114.17024 * 297.42286 * 15 14 13 17 17 H 1.09000 * 109.51153 * 302.60407 * 16 15 14 18 18 C 1.53000 * 109.51531 * 182.50345 * 16 15 14 19 19 H 1.09001 * 109.47353 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47187 * 59.99754 * 18 16 15 21 21 N 1.46500 * 109.46735 * 299.99948 * 18 16 15 22 22 C 1.36938 * 119.99522 * 205.00312 * 21 18 16 23 23 H 1.07995 * 120.00570 * 359.97438 * 22 21 18 24 24 C 1.38813 * 119.99597 * 180.02562 * 22 21 18 25 25 N 1.31614 * 120.00384 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 119.99781 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47280 * 179.97438 * 26 24 22 28 28 H 1.48504 * 109.46913 * 299.99196 * 26 24 22 29 29 H 1.48494 * 109.47652 * 59.99361 * 26 24 22 30 30 C 1.47147 * 120.98417 * 175.89229 * 12 10 9 31 31 H 1.09003 * 109.46836 * 300.00213 * 1 2 3 32 32 H 1.08999 * 109.47124 * 60.00023 * 1 2 3 33 33 H 1.08998 * 109.47026 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46836 * 239.99786 * 2 1 3 35 35 H 1.09006 * 109.47086 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47114 * 299.99983 * 3 2 1 37 37 H 1.08993 * 109.47600 * 60.00025 * 3 2 1 38 38 H 1.08002 * 125.57596 * 180.02562 * 7 5 4 39 39 H 1.08000 * 126.83681 * 180.26833 * 8 7 5 40 40 H 1.09003 * 109.68387 * 9.76549 * 13 12 10 41 41 H 1.09000 * 109.68318 * 249.20519 * 13 12 10 42 42 H 1.09000 * 109.51528 * 292.37954 * 14 13 12 43 43 H 1.09003 * 109.55429 * 172.24865 * 14 13 12 44 44 H 1.09002 * 109.46941 * 180.02562 * 20 18 16 45 45 H 1.09003 * 109.46918 * 299.99946 * 20 18 16 46 46 H 1.08993 * 109.47176 * 59.99896 * 20 18 16 47 47 H 0.96994 * 120.00633 * 24.99704 * 21 18 16 48 48 H 0.97000 * 120.00557 * 179.97438 * 25 24 22 49 49 H 1.08998 * 109.68412 * 110.78616 * 30 12 10 50 50 H 1.09003 * 109.67833 * 350.23784 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7805 -0.3533 2.5042 6 1 1.2420 0.4084 2.7702 7 6 2.3910 -1.2161 3.3672 8 6 3.0448 -2.1519 2.6563 9 6 2.8219 -1.8271 1.2433 10 6 3.3388 -2.5591 0.0746 11 8 3.8396 -1.9502 -0.8515 12 7 3.2568 -3.9036 0.0313 13 6 2.7379 -4.6681 1.1766 14 6 1.6589 -5.6303 0.6667 15 8 2.1856 -6.3946 -0.4207 16 6 2.5589 -5.6136 -1.5584 17 1 1.6975 -5.0444 -1.9077 18 6 3.0473 -6.5384 -2.6752 19 1 3.3321 -5.9422 -3.5421 20 6 1.9258 -7.5033 -3.0653 21 7 4.2064 -7.3012 -2.2055 22 6 5.1165 -7.7874 -3.1059 23 1 4.9795 -7.6089 -4.1621 24 6 6.2146 -8.5107 -2.6609 25 7 6.3813 -8.7287 -1.3737 26 14 7.4556 -9.1746 -3.8891 27 1 8.5267 -9.9051 -3.1649 28 1 6.7744 -10.0995 -4.8303 29 1 8.0527 -8.0468 -4.6485 30 6 3.6839 -4.6506 -1.1624 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9564 0.8899 38 1 2.3513 -1.1598 4.4450 39 1 3.6215 -2.9769 3.0478 40 1 2.3050 -3.9855 1.9079 41 1 3.5473 -5.2349 1.6367 42 1 0.7944 -5.0604 0.3260 43 1 1.3585 -6.3013 1.4715 44 1 2.2739 -8.1624 -3.8607 45 1 1.6414 -8.0995 -2.1982 46 1 1.0633 -6.9357 -3.4147 47 1 4.3294 -7.4619 -1.2569 48 1 7.1484 -9.2345 -1.0628 49 1 4.5886 -5.2154 -0.9378 50 1 3.8776 -3.9562 -1.9800 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282912985.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:14 Heat of formation + Delta-G solvation = -46.364613 kcal Electronic energy + Delta-G solvation = -30368.524342 eV Core-core repulsion = 26395.893182 eV Total energy + Delta-G solvation = -3972.631160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.40399 -41.01439 -39.32449 -37.08478 -36.23057 -35.60849 -34.17187 -32.38744 -31.36499 -30.10459 -29.64253 -28.65061 -28.08841 -25.99705 -25.12646 -24.35368 -23.03637 -22.20527 -21.41731 -21.15503 -19.61338 -19.20685 -18.49291 -17.64083 -17.39639 -16.87329 -16.67000 -16.24741 -15.96954 -15.82034 -15.42402 -15.28282 -15.11842 -15.06178 -14.91972 -14.56726 -14.20486 -14.11335 -13.90100 -13.80050 -13.47373 -13.37416 -13.09110 -13.05836 -12.86591 -12.72265 -12.50760 -12.48331 -12.21829 -12.16341 -12.08768 -11.87153 -11.78969 -11.67306 -11.48257 -11.08365 -10.93166 -10.86334 -9.75318 -9.51052 -9.11253 -8.93499 -7.88201 -5.15664 0.88117 1.47854 1.51096 1.54796 1.56533 1.83828 2.21260 2.41472 2.59024 2.82156 3.45154 3.62870 3.69079 3.77817 3.92535 3.95236 4.01642 4.11754 4.17008 4.21986 4.28374 4.35915 4.41157 4.45785 4.53567 4.58121 4.63076 4.69409 4.78015 4.81650 4.83786 4.87018 4.87728 4.98643 5.02904 5.08125 5.10633 5.15188 5.22207 5.30473 5.32952 5.40632 5.54495 5.61624 5.77933 6.01615 6.27192 6.34384 6.42586 6.69720 7.17261 7.40065 8.16254 8.41996 9.35005 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017022 B = 0.002887 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.569421 B = 9696.509321 C = 9739.935307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 C -0.138 4.138 4 C 0.104 3.896 5 N -0.533 5.533 6 H 0.432 0.568 7 C 0.014 3.986 8 C -0.196 4.196 9 C -0.258 4.258 10 C 0.585 3.415 11 O -0.592 6.592 12 N -0.606 5.606 13 C 0.069 3.931 14 C 0.045 3.955 15 O -0.383 6.383 16 C 0.095 3.905 17 H 0.075 0.925 18 C 0.173 3.827 19 H 0.058 0.942 20 C -0.147 4.147 21 N -0.726 5.726 22 C -0.237 4.237 23 H 0.075 0.925 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.969 3.031 27 H -0.297 1.297 28 H -0.278 1.278 29 H -0.281 1.281 30 C 0.096 3.904 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.212 0.788 39 H 0.149 0.851 40 H 0.130 0.870 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.128 0.872 44 H 0.039 0.961 45 H 0.045 0.955 46 H 0.067 0.933 47 H 0.377 0.623 48 H 0.249 0.751 49 H 0.055 0.945 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.946 20.636 12.510 30.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.061 4.061 3 C -0.196 4.196 4 C -0.015 4.015 5 N -0.129 5.129 6 H 0.272 0.728 7 C -0.114 4.114 8 C -0.220 4.220 9 C -0.268 4.268 10 C 0.376 3.624 11 O -0.474 6.474 12 N -0.338 5.338 13 C -0.053 4.053 14 C -0.032 4.032 15 O -0.302 6.302 16 C 0.036 3.964 17 H 0.093 0.907 18 C 0.064 3.936 19 H 0.076 0.924 20 C -0.207 4.207 21 N -0.367 5.367 22 C -0.369 4.369 23 H 0.093 0.907 24 C -0.267 4.267 25 N -0.619 5.619 26 Si 0.798 3.202 27 H -0.224 1.224 28 H -0.204 1.204 29 H -0.207 1.207 30 C -0.027 4.027 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.229 0.771 39 H 0.166 0.834 40 H 0.148 0.852 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.145 0.855 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.210 0.790 48 H 0.057 0.943 49 H 0.073 0.927 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.658 20.820 11.954 29.803 hybrid contribution 1.286 -0.452 -0.380 1.415 sum -16.372 20.368 11.574 28.581 Atomic orbital electron populations 1.21825 0.92044 1.02219 1.03567 1.19914 0.97198 0.96434 0.92563 1.21780 1.00588 0.93760 1.03451 1.20071 0.99482 0.94921 0.86990 1.41419 1.41584 1.25920 1.03969 0.72785 1.22276 0.99757 0.92116 0.97252 1.22163 1.06787 1.03164 0.89864 1.20021 1.11797 1.01738 0.93290 1.18113 0.77117 0.81085 0.86064 1.90715 1.47224 1.68499 1.40990 1.48108 1.63332 1.05659 1.16722 1.22824 0.98016 0.95635 0.88798 1.23185 0.94636 0.94997 0.90364 1.88047 1.82894 1.34126 1.25123 1.22588 0.95116 0.91512 0.87167 0.90739 1.20503 0.87878 0.91810 0.93404 0.92427 1.22160 0.98130 0.99854 1.00551 1.42485 1.24276 1.63641 1.06326 1.19601 1.01268 1.25776 0.90266 0.90697 1.25489 1.01091 1.02661 0.97502 1.69827 1.31333 1.46769 1.13925 0.85279 0.78699 0.78059 0.78129 1.22362 1.20399 1.20738 1.22029 0.98112 0.94152 0.88404 0.90602 0.90856 0.93172 0.91607 0.94158 0.90795 0.90606 0.77137 0.83380 0.85219 0.91548 0.91885 0.85464 0.94201 0.93558 0.91372 0.79011 0.94265 0.92653 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.18 71.98 0.66 -1.08 16 2 C -0.04 -0.78 3.26 -11.54 -0.04 -0.82 16 3 C -0.14 -2.07 9.18 71.98 0.66 -1.41 16 4 C 0.10 2.07 5.68 41.78 0.24 2.30 16 5 N -0.53 -6.09 5.90 -182.72 -1.08 -7.17 16 6 H 0.43 1.80 8.96 -92.71 -0.83 0.97 16 7 C 0.01 0.17 11.89 83.12 0.99 1.15 16 8 C -0.20 -3.80 8.70 23.62 0.21 -3.59 16 9 C -0.26 -6.77 5.33 -19.04 -0.10 -6.87 16 10 C 0.58 20.50 7.22 86.62 0.63 21.13 16 11 O -0.59 -25.26 15.53 -4.11 -0.06 -25.33 16 12 N -0.61 -20.55 3.02 -821.41 -2.48 -23.03 16 13 C 0.07 1.84 6.00 86.35 0.52 2.35 16 14 C 0.05 1.15 6.99 72.08 0.50 1.65 16 15 O -0.38 -13.60 9.22 -148.98 -1.37 -14.98 16 16 C 0.10 3.47 2.53 30.69 0.08 3.54 16 17 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 18 C 0.17 7.22 2.74 44.99 0.12 7.35 16 19 H 0.06 2.41 8.08 -2.39 -0.02 2.39 16 20 C -0.15 -5.51 9.35 71.98 0.67 -4.84 16 21 N -0.73 -38.09 4.29 -322.94 -1.38 -39.47 16 22 C -0.24 -13.58 9.93 84.03 0.83 -12.75 16 23 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 24 C -0.08 -4.46 5.50 84.86 0.47 -4.00 16 25 N -0.97 -61.20 13.06 21.65 0.28 -60.92 16 26 Si 0.97 47.90 29.55 68.60 2.03 49.93 16 27 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 28 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 29 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 30 C 0.10 3.83 5.85 86.35 0.50 4.34 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.07 1.76 6.69 -2.39 -0.02 1.74 16 35 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.21 0.64 8.06 -2.91 -0.02 0.62 16 39 H 0.15 2.73 7.53 -2.91 -0.02 2.71 16 40 H 0.13 2.71 4.57 -2.39 -0.01 2.70 16 41 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.81 7.68 -2.39 -0.02 1.79 16 46 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.38 21.59 7.20 -92.71 -0.67 20.93 16 48 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 49 H 0.06 2.63 7.26 -2.39 -0.02 2.61 16 50 H 0.08 3.29 7.11 -2.39 -0.02 3.27 16 Total: -1.00 -79.65 398.17 2.32 -77.33 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -0.55 Total: 35.17 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: 6.94 Total: 8.46 kcal Atomic # 7 Polarization: -125.93 SS G_CDS: -4.66 Total: -130.59 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: -1.44 Total: -40.30 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -79.65 2.32 -77.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282912985.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.963 kcal (2) G-P(sol) polarization free energy of solvation -79.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds